Wall clock time and date at job start Tue Mar 31 2020 12:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00245 * 2 1 4 4 H 1.48499 * 109.46998 * 179.97438 * 3 2 1 5 5 H 1.48489 * 109.46978 * 299.99801 * 3 2 1 6 6 H 1.48503 * 109.46712 * 59.99605 * 3 2 1 7 7 C 1.37879 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00005 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00166 * 0.02562 * 7 2 1 10 10 C 1.53071 * 109.44365 * 59.78883 * 9 7 2 11 11 C 1.53192 * 109.29669 * 181.24072 * 10 9 7 12 12 N 1.46926 * 108.89029 * 305.57921 * 11 10 9 13 13 C 1.34779 * 120.62965 * 233.55576 * 12 11 10 14 14 O 1.21345 * 119.99804 * 353.07380 * 13 12 11 15 15 C 1.49450 * 119.99959 * 173.06654 * 13 12 11 16 16 O 1.21355 * 119.99841 * 353.34180 * 15 13 12 17 17 N 1.34768 * 119.99962 * 173.33912 * 15 13 12 18 18 C 1.46504 * 120.00123 * 180.02562 * 17 15 13 19 19 C 1.53006 * 109.47173 * 179.97438 * 18 17 15 20 20 N 1.46505 * 109.46715 * 179.97438 * 19 18 17 21 21 C 1.34950 * 126.03113 * 125.00199 * 20 19 18 22 22 C 1.35308 * 107.74400 * 179.97438 * 21 20 19 23 23 C 1.39864 * 107.92234 * 0.02562 * 22 21 20 24 24 N 1.30840 * 108.20406 * 359.73714 * 23 22 21 25 25 C 1.46927 * 118.74163 * 53.53736 * 12 11 10 26 26 C 1.53039 * 109.45899 * 179.97438 * 9 7 2 27 27 H 0.97002 * 119.99706 * 0.02562 * 1 2 3 28 28 H 1.09009 * 109.45335 * 299.96658 * 9 7 2 29 29 H 1.08998 * 109.39068 * 61.36173 * 10 9 7 30 30 H 1.09008 * 109.62009 * 301.25665 * 10 9 7 31 31 H 1.08995 * 109.58780 * 185.72372 * 11 10 9 32 32 H 1.09003 * 109.58422 * 65.43621 * 11 10 9 33 33 H 0.96997 * 120.00607 * 0.02562 * 17 15 13 34 34 H 1.09001 * 109.47155 * 299.99706 * 18 17 15 35 35 H 1.08998 * 109.47111 * 59.99642 * 18 17 15 36 36 H 1.08993 * 109.47263 * 299.99967 * 19 18 17 37 37 H 1.09009 * 109.46913 * 60.00211 * 19 18 17 38 38 H 1.08001 * 126.12758 * 359.95533 * 21 20 19 39 39 H 1.08000 * 126.03897 * 179.97438 * 22 21 20 40 40 H 1.08005 * 125.90210 * 180.02562 * 23 22 21 41 41 H 1.08997 * 109.58946 * 66.17446 * 25 12 11 42 42 H 1.08998 * 109.59100 * 186.46270 * 25 12 11 43 43 H 1.08999 * 109.49875 * 58.67382 * 26 9 7 44 44 H 1.09001 * 109.52161 * 298.58857 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 0.3677 -2.5776 -1.2472 11 6 -0.4199 -3.8914 -1.2281 12 7 0.5226 -5.0089 -1.0815 13 6 0.5126 -6.0349 -1.9555 14 8 -0.3580 -6.1059 -2.7977 15 6 1.5739 -7.0849 -1.8874 16 8 2.5107 -6.9523 -1.1274 17 7 1.4906 -8.1789 -2.6699 18 6 2.5307 -9.2086 -2.6028 19 6 2.1981 -10.3342 -3.5843 20 7 3.2385 -11.3635 -3.5175 21 6 3.0417 -12.6767 -3.2772 22 6 4.2500 -13.2855 -3.2986 23 6 5.2184 -12.3109 -3.5605 24 7 4.6127 -11.1592 -3.6971 25 6 1.4765 -4.9867 0.0358 26 6 2.2457 -3.6622 0.0005 27 1 -0.4850 0.8401 -0.0004 28 1 0.6245 -2.5567 0.8908 29 1 0.9953 -2.5425 -2.1376 30 1 -0.3266 -1.7373 -1.2575 31 1 -0.9726 -3.9997 -2.1613 32 1 -1.1160 -3.8880 -0.3893 33 1 0.7420 -8.2848 -3.2776 34 1 3.4935 -8.7700 -2.8650 35 1 2.5783 -9.6114 -1.5911 36 1 1.2354 -10.7726 -3.3217 37 1 2.1502 -9.9316 -4.5962 38 1 2.0903 -13.1559 -3.0993 39 1 4.4341 -14.3378 -3.1406 40 1 6.2820 -12.4804 -3.6410 41 1 0.9367 -5.0710 0.9789 42 1 2.1735 -5.8190 -0.0620 43 1 2.8881 -3.5915 0.8782 44 1 2.8561 -3.6195 -0.9016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321965552.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:22 Heat of formation + Delta-G solvation = 6.299801 kcal Electronic energy + Delta-G solvation = -26327.475220 eV Core-core repulsion = 22474.550947 eV Total energy + Delta-G solvation = -3852.924273 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.15070 -41.93057 -39.94297 -38.63742 -37.01628 -35.36683 -34.02911 -32.95406 -31.88315 -31.10239 -29.74669 -28.28829 -26.33559 -24.72858 -24.18027 -23.26511 -22.07425 -21.85966 -21.45063 -20.48121 -18.85335 -18.54497 -18.25681 -17.77399 -17.32643 -16.79876 -16.52049 -16.46662 -16.12024 -15.69403 -15.20470 -15.15003 -14.92300 -14.78019 -14.58343 -14.44411 -14.20012 -13.86658 -13.60171 -13.50228 -13.23819 -13.09519 -12.86028 -12.73837 -12.56546 -12.38100 -12.14110 -11.94986 -11.55680 -11.47096 -11.26784 -10.87946 -10.52939 -10.45938 -10.40242 -10.07320 -9.71542 -9.51361 -8.09707 -6.23308 0.23602 0.92735 1.11915 1.38813 1.41533 1.52218 1.68947 1.99406 2.03510 2.42375 2.47466 3.16376 3.19829 3.41259 3.72839 4.04321 4.11312 4.13664 4.22637 4.28843 4.32999 4.42905 4.50988 4.56572 4.62076 4.70119 4.75988 4.84654 4.93531 4.93986 5.08984 5.17617 5.19228 5.29997 5.37503 5.42702 5.61259 5.76143 5.89756 5.95304 6.07544 6.14629 6.26717 6.36903 6.63353 6.78344 6.84152 6.86882 7.44510 8.93960 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028071 B = 0.002222 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.240842 B =12597.330972 C =13202.876162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.014 3.986 3 Si 0.952 3.048 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.533 4.533 8 H 0.049 0.951 9 C 0.042 3.958 10 C -0.112 4.112 11 C 0.116 3.884 12 N -0.569 5.569 13 C 0.501 3.499 14 O -0.549 6.549 15 C 0.519 3.481 16 O -0.521 6.521 17 N -0.679 5.679 18 C 0.114 3.886 19 C 0.127 3.873 20 N -0.382 5.382 21 C 0.060 3.940 22 C -0.287 4.287 23 C 0.036 3.964 24 N -0.343 5.343 25 C 0.057 3.943 26 C -0.110 4.110 27 H 0.261 0.739 28 H 0.004 0.996 29 H 0.024 0.976 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.426 0.574 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.144 0.856 37 H 0.102 0.898 38 H 0.212 0.788 39 H 0.168 0.832 40 H 0.200 0.800 41 H 0.068 0.932 42 H 0.154 0.846 43 H 0.066 0.934 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.997 -27.534 -6.597 28.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.185 4.185 3 Si 0.778 3.222 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.571 4.571 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.151 4.151 11 C -0.006 4.006 12 N -0.300 5.300 13 C 0.284 3.716 14 O -0.429 6.429 15 C 0.300 3.700 16 O -0.399 6.399 17 N -0.334 5.334 18 C -0.010 4.010 19 C 0.006 3.994 20 N -0.166 5.166 21 C -0.086 4.086 22 C -0.316 4.316 23 C -0.150 4.150 24 N -0.165 5.165 25 C -0.063 4.063 26 C -0.148 4.148 27 H 0.071 0.929 28 H 0.022 0.978 29 H 0.043 0.957 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.265 0.735 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.162 0.838 37 H 0.120 0.880 38 H 0.229 0.771 39 H 0.185 0.815 40 H 0.216 0.784 41 H 0.086 0.914 42 H 0.170 0.830 43 H 0.084 0.916 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.089 -26.011 -6.733 26.949 hybrid contribution 0.037 0.672 0.019 0.673 sum 2.126 -25.339 -6.713 26.299 Atomic orbital electron populations 1.69963 1.06908 1.27098 1.51360 1.25700 0.95743 1.02180 0.94872 0.85601 0.79017 0.80000 0.77598 1.19530 1.20710 1.20521 1.21585 0.92965 0.92180 1.50354 0.93287 1.18670 0.93153 0.92481 0.93322 1.21796 0.99394 0.95559 0.98310 1.21809 0.91234 0.85196 1.02317 1.48204 1.35149 1.19616 1.27048 1.20122 0.85814 0.83504 0.82176 1.90697 1.37863 1.76942 1.37384 1.20008 0.85921 0.82992 0.81083 1.90366 1.34772 1.76470 1.38264 1.45403 1.27599 1.18866 1.41496 1.21588 0.90881 0.87741 1.00813 1.21901 0.89421 0.87089 1.01017 1.48639 1.05274 1.07221 1.55416 1.23282 1.02194 0.83700 0.99380 1.21911 0.91527 1.02076 1.16091 1.24417 1.01858 0.90138 0.98603 1.77378 0.88405 1.24965 1.25766 1.23270 0.93007 1.02396 0.87635 1.21788 0.98154 0.94232 1.00672 0.92927 0.97758 0.95723 0.90131 0.89857 0.91045 0.73549 0.91609 0.90565 0.83841 0.88017 0.77104 0.81451 0.78377 0.91380 0.82954 0.91586 0.94107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.96 11.30 21.45 0.24 -51.72 16 2 C 0.01 0.76 5.30 84.66 0.45 1.21 16 3 Si 0.95 43.90 29.54 68.60 2.03 45.93 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 7 C -0.53 -29.54 8.56 25.60 0.22 -29.32 16 8 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 9 C 0.04 2.11 2.06 -11.50 -0.02 2.09 16 10 C -0.11 -5.32 5.16 30.68 0.16 -5.17 16 11 C 0.12 4.59 6.41 86.36 0.55 5.14 16 12 N -0.57 -20.70 2.97 -820.47 -2.44 -23.14 16 13 C 0.50 16.43 7.74 87.27 0.68 17.10 16 14 O -0.55 -18.92 15.94 -3.23 -0.05 -18.97 16 15 C 0.52 14.28 7.78 87.27 0.68 14.96 16 16 O -0.52 -16.58 13.10 -3.26 -0.04 -16.62 16 17 N -0.68 -12.52 5.55 -464.40 -2.58 -15.09 16 18 C 0.11 1.84 5.86 86.38 0.51 2.35 16 19 C 0.13 1.21 6.62 86.38 0.57 1.78 16 20 N -0.38 -5.54 3.68 -348.04 -1.28 -6.82 16 21 C 0.06 0.60 11.45 83.54 0.96 1.55 16 22 C -0.29 -3.36 10.80 21.99 0.24 -3.12 16 23 C 0.04 0.56 12.02 85.23 1.02 1.58 16 24 N -0.34 -7.06 12.42 -57.02 -0.71 -7.77 16 25 C 0.06 2.05 6.27 86.37 0.54 2.59 16 26 C -0.11 -4.66 5.30 30.67 0.16 -4.50 16 27 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 28 H 0.00 0.23 8.14 -2.38 -0.02 0.21 16 29 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 4.26 6.03 -2.38 -0.01 4.25 16 31 H 0.08 3.18 7.05 -2.39 -0.02 3.17 16 32 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.43 5.91 7.96 -92.71 -0.74 5.17 16 34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.14 0.27 8.07 -2.39 -0.02 0.25 16 37 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.21 0.28 8.06 -2.91 -0.02 0.26 16 39 H 0.17 1.14 8.06 -2.91 -0.02 1.11 16 40 H 0.20 2.06 8.06 -2.91 -0.02 2.04 16 41 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.15 5.22 3.78 -78.72 -0.30 4.92 16 43 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 44 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -71.72 363.58 1.88 -69.84 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.00 Total: 16.11 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 6.71 Total: 8.25 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -6.76 Total: -104.53 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.09 Total: -35.59 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -71.72 1.88 -69.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321965552.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.137 kcal (2) G-P(sol) polarization free energy of solvation -71.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds