Wall clock time and date at job start Tue Mar 31 2020 12:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99911 * 2 1 4 4 H 1.48501 * 109.47390 * 270.00049 * 3 2 1 5 5 H 1.48499 * 109.47109 * 30.00026 * 3 2 1 6 6 H 1.48499 * 109.47119 * 149.99965 * 3 2 1 7 7 C 1.37878 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00049 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00207 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47344 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46928 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46630 * 180.02562 * 11 10 9 13 13 C 1.34773 * 119.99514 * 180.02562 * 12 11 10 14 14 O 1.21362 * 120.00624 * 359.97438 * 13 12 11 15 15 C 1.49347 * 119.99859 * 180.02562 * 13 12 11 16 16 O 1.21383 * 119.99785 * 359.97438 * 15 13 12 17 17 N 1.34774 * 120.00278 * 179.97438 * 15 13 12 18 18 C 1.39929 * 120.00269 * 179.97438 * 17 15 13 19 19 C 1.40631 * 125.95349 * 359.97438 * 18 17 15 20 20 C 1.34669 * 107.75630 * 179.72340 * 19 18 17 21 21 N 1.35358 * 108.03085 * 0.29638 * 20 19 18 22 22 N 1.31449 * 125.95600 * 180.17617 * 18 17 15 23 23 C 1.46612 * 124.52330 * 179.89202 * 21 20 19 24 24 C 1.53234 * 108.80594 * 342.71213 * 23 21 20 25 25 C 1.53149 * 109.55551 * 50.59568 * 24 23 21 26 26 C 1.50902 * 127.66371 * 180.31561 * 20 19 18 27 27 H 0.97003 * 120.00168 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.46714 * 60.00095 * 9 7 2 29 29 H 1.08999 * 109.47392 * 300.00773 * 9 7 2 30 30 H 1.09001 * 109.46740 * 60.00483 * 10 9 7 31 31 H 1.08991 * 109.47264 * 300.00066 * 10 9 7 32 32 H 1.09001 * 109.46925 * 60.00706 * 11 10 9 33 33 H 1.08991 * 109.47291 * 300.00159 * 11 10 9 34 34 H 0.96993 * 120.00395 * 0.02562 * 12 11 10 35 35 H 0.97008 * 119.99726 * 0.02562 * 17 15 13 36 36 H 1.08002 * 126.12440 * 359.97438 * 19 18 17 37 37 H 1.09003 * 109.58160 * 222.91515 * 23 21 20 38 38 H 1.09004 * 109.69507 * 102.57477 * 23 21 20 39 39 H 1.09001 * 109.46092 * 290.56831 * 24 23 21 40 40 H 1.09001 * 109.45594 * 170.61546 * 24 23 21 41 41 H 1.08996 * 109.51866 * 170.61909 * 25 24 23 42 42 H 1.08999 * 109.51747 * 50.44186 * 25 24 23 43 43 H 1.08997 * 109.71793 * 283.87843 * 26 20 19 44 44 H 1.09007 * 109.71785 * 44.52813 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0216 -2.6365 0.0001 11 6 5.5516 -2.6364 -0.0012 12 7 6.0399 -4.0177 -0.0017 13 6 7.3650 -4.2639 -0.0022 14 8 8.1537 -3.3415 -0.0028 15 6 7.8628 -5.6719 -0.0033 16 8 7.0741 -6.5945 -0.0032 17 7 9.1879 -5.9182 -0.0044 18 6 9.6544 -7.2375 -0.0049 19 6 8.8563 -8.3954 -0.0038 20 6 9.6793 -9.4614 -0.0109 21 7 10.9541 -9.0065 -0.0097 22 7 10.9148 -7.6104 -0.0027 23 6 12.1427 -9.8649 -0.0137 24 6 11.7324 -11.2786 0.4118 25 6 10.5326 -11.7371 -0.4223 26 6 9.2972 -10.9212 -0.0194 27 1 -0.4850 0.8401 -0.0004 28 1 3.8751 -0.6796 0.8895 29 1 3.8746 -0.6807 -0.8904 30 1 3.6579 -3.1505 -0.8897 31 1 3.6586 -3.1502 0.8902 32 1 5.9156 -2.1224 0.8884 33 1 5.9142 -2.1229 -0.8915 34 1 5.4097 -4.7550 -0.0016 35 1 9.8182 -5.1809 -0.0041 36 1 7.7767 -8.4247 -0.0021 37 1 12.8795 -9.4719 0.6868 38 1 12.5708 -9.8948 -1.0157 39 1 11.4609 -11.2757 1.4674 40 1 12.5668 -11.9619 0.2536 41 1 10.3454 -12.7953 -0.2400 42 1 10.7433 -11.5805 -1.4802 43 1 8.9669 -11.2207 0.9752 44 1 8.4958 -11.0874 -0.7394 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322919009.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:40 Heat of formation + Delta-G solvation = -0.957411 kcal Electronic energy + Delta-G solvation = -25409.758296 eV Core-core repulsion = 21556.519326 eV Total energy + Delta-G solvation = -3853.238969 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.01083 -40.71410 -38.77961 -37.08186 -35.92052 -34.74132 -33.33962 -32.83447 -31.51116 -30.27047 -28.48692 -27.68222 -25.51248 -24.41118 -22.81996 -22.61279 -21.30073 -20.66030 -20.22367 -19.53319 -18.21304 -17.17451 -16.87450 -16.73547 -16.45589 -16.16955 -15.87567 -15.36263 -15.02370 -14.75796 -14.55921 -14.35564 -14.26932 -13.90857 -13.72886 -13.68685 -13.23932 -12.73365 -12.60438 -12.11212 -11.98964 -11.86244 -11.67827 -11.55271 -11.50314 -11.12872 -11.02101 -10.92904 -10.90635 -10.18884 -10.00016 -9.80186 -9.59746 -9.24785 -9.14028 -9.00277 -8.56631 -8.54477 -6.07042 -4.06120 0.99616 1.62970 1.64804 2.43871 2.53782 3.17378 3.30427 3.38220 3.41571 3.45753 3.87324 4.06024 4.15602 4.20085 4.34629 4.43282 4.66469 4.74111 4.80961 5.07214 5.11522 5.17295 5.26693 5.27822 5.34257 5.37260 5.40539 5.54371 5.54581 5.56494 5.81195 5.90886 6.09024 6.37085 6.44437 6.50026 6.65639 6.71843 6.72905 7.16575 7.19961 7.32485 7.50381 7.55690 7.74048 7.87128 8.49100 8.96961 9.54760 11.06111 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.039413 B = 0.001805 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.252893 B =15507.419890 C =16153.535326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.523 4.523 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.115 4.115 11 C 0.111 3.889 12 N -0.687 5.687 13 C 0.509 3.491 14 O -0.520 6.520 15 C 0.519 3.481 16 O -0.492 6.492 17 N -0.610 5.610 18 C 0.296 3.704 19 C -0.262 4.262 20 C 0.094 3.906 21 N -0.363 5.363 22 N -0.315 5.315 23 C 0.136 3.864 24 C -0.136 4.136 25 C -0.127 4.127 26 C -0.059 4.059 27 H 0.263 0.737 28 H 0.020 0.980 29 H 0.015 0.985 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.414 0.586 35 H 0.427 0.573 36 H 0.174 0.826 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.290 -25.208 0.049 35.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.049 4.049 10 C -0.153 4.153 11 C -0.011 4.011 12 N -0.339 5.339 13 C 0.288 3.712 14 O -0.397 6.397 15 C 0.300 3.700 16 O -0.363 6.363 17 N -0.260 5.260 18 C 0.041 3.959 19 C -0.292 4.292 20 C -0.034 4.034 21 N -0.148 5.148 22 N -0.145 5.145 23 C 0.015 3.985 24 C -0.175 4.175 25 C -0.165 4.165 26 C -0.098 4.098 27 H 0.073 0.927 28 H 0.038 0.962 29 H 0.034 0.966 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.250 0.750 35 H 0.266 0.734 36 H 0.191 0.809 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.109 0.891 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 26.384 -24.693 0.054 36.137 hybrid contribution -0.326 0.823 -0.023 0.886 sum 26.058 -23.870 0.031 35.338 Atomic orbital electron populations 1.69911 1.06317 1.26969 1.50868 1.25028 0.94750 0.99225 0.94456 0.86776 0.80391 0.83550 0.78571 1.20255 1.21363 1.18899 1.21087 0.89245 0.94580 1.51215 0.90919 1.19506 0.97382 0.91221 0.96750 1.21750 0.90005 1.01331 1.02259 1.21898 0.96747 0.79767 1.02680 1.45983 1.05714 1.11355 1.70838 1.19586 0.84201 0.88053 0.79387 1.90794 1.55174 1.45079 1.48647 1.20408 0.81871 0.90576 0.77162 1.90707 1.54912 1.45261 1.45424 1.42213 1.07723 1.05408 1.70693 1.19093 0.91385 0.85363 1.00071 1.21414 1.01972 0.88319 1.17470 1.21081 0.84596 0.96778 1.00902 1.48205 1.05421 1.02785 1.58438 1.77304 1.16561 0.89898 1.30702 1.21784 0.85028 0.88354 1.03286 1.21966 0.99769 0.94408 1.01348 1.21685 0.94010 1.00394 1.00395 1.20486 0.98662 0.86875 1.03779 0.92676 0.96205 0.96649 0.91743 0.91710 0.90904 0.90916 0.74984 0.73433 0.80885 0.88988 0.89880 0.90468 0.88897 0.90042 0.91047 0.89090 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.52 -14.57 9.66 -34.44 -0.33 -14.91 16 8 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 9 C -0.01 -0.24 4.04 -27.89 -0.11 -0.35 16 10 C -0.12 -2.08 5.27 -26.73 -0.14 -2.22 16 11 C 0.11 1.72 5.67 -4.04 -0.02 1.70 16 12 N -0.69 -9.39 5.55 -60.76 -0.34 -9.73 16 13 C 0.51 7.12 7.89 -11.64 -0.09 7.03 16 14 O -0.52 -8.33 16.48 5.49 0.09 -8.24 16 15 C 0.52 6.76 7.85 -11.63 -0.09 6.67 16 16 O -0.49 -6.86 13.60 5.47 0.07 -6.79 16 17 N -0.61 -7.43 5.43 -11.50 -0.06 -7.49 16 18 C 0.30 3.82 8.11 -154.34 -1.25 2.57 16 19 C -0.26 -3.15 9.55 -39.94 -0.38 -3.53 16 20 C 0.09 0.89 6.58 -82.20 -0.54 0.35 16 21 N -0.36 -3.57 4.04 -56.93 -0.23 -3.80 16 22 N -0.32 -3.97 12.64 31.48 0.40 -3.57 16 23 C 0.14 0.76 7.27 -3.86 -0.03 0.73 16 24 C -0.14 -0.43 5.93 -26.53 -0.16 -0.59 16 25 C -0.13 -0.44 5.97 -26.43 -0.16 -0.60 16 26 C -0.06 -0.32 6.29 -27.56 -0.17 -0.50 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 29 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.41 5.08 7.94 -40.82 -0.32 4.76 16 35 H 0.43 4.67 8.29 -40.82 -0.34 4.33 16 36 H 0.17 2.17 5.92 -52.49 -0.31 1.86 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.28 8.12 -51.93 -0.42 -0.15 16 40 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 41 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 42 H 0.07 0.27 8.12 -51.93 -0.42 -0.15 16 43 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.10 0.45 8.14 -51.92 -0.42 0.03 16 LS Contribution 366.34 15.07 5.52 5.52 Total: -1.00 -34.18 366.34 -8.42 -42.60 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -6.40 Total: 3.29 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -3.58 Total: -1.82 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: 0.54 Total: -51.37 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.16 Total: -15.03 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.18 -8.42 -42.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322919009.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.643 kcal (2) G-P(sol) polarization free energy of solvation -34.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds