Wall clock time and date at job start Tue Mar 31 2020 12:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99911 * 2 1 4 4 H 1.48501 * 109.47390 * 270.00049 * 3 2 1 5 5 H 1.48499 * 109.47109 * 30.00026 * 3 2 1 6 6 H 1.48499 * 109.47119 * 149.99965 * 3 2 1 7 7 C 1.37878 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00049 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00207 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47344 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46928 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46630 * 180.02562 * 11 10 9 13 13 C 1.34773 * 119.99514 * 180.02562 * 12 11 10 14 14 O 1.21362 * 120.00624 * 359.97438 * 13 12 11 15 15 C 1.49347 * 119.99859 * 180.02562 * 13 12 11 16 16 O 1.21383 * 119.99785 * 359.97438 * 15 13 12 17 17 N 1.34774 * 120.00278 * 179.97438 * 15 13 12 18 18 C 1.39929 * 120.00269 * 179.97438 * 17 15 13 19 19 C 1.40631 * 125.95349 * 359.97438 * 18 17 15 20 20 C 1.34669 * 107.75630 * 179.72340 * 19 18 17 21 21 N 1.35358 * 108.03085 * 0.29638 * 20 19 18 22 22 N 1.31449 * 125.95600 * 180.17617 * 18 17 15 23 23 C 1.46612 * 124.52330 * 179.89202 * 21 20 19 24 24 C 1.53234 * 108.80594 * 342.71213 * 23 21 20 25 25 C 1.53149 * 109.55551 * 50.59568 * 24 23 21 26 26 C 1.50902 * 127.66371 * 180.31561 * 20 19 18 27 27 H 0.97003 * 120.00168 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.46714 * 60.00095 * 9 7 2 29 29 H 1.08999 * 109.47392 * 300.00773 * 9 7 2 30 30 H 1.09001 * 109.46740 * 60.00483 * 10 9 7 31 31 H 1.08991 * 109.47264 * 300.00066 * 10 9 7 32 32 H 1.09001 * 109.46925 * 60.00706 * 11 10 9 33 33 H 1.08991 * 109.47291 * 300.00159 * 11 10 9 34 34 H 0.96993 * 120.00395 * 0.02562 * 12 11 10 35 35 H 0.97008 * 119.99726 * 0.02562 * 17 15 13 36 36 H 1.08002 * 126.12440 * 359.97438 * 19 18 17 37 37 H 1.09003 * 109.58160 * 222.91515 * 23 21 20 38 38 H 1.09004 * 109.69507 * 102.57477 * 23 21 20 39 39 H 1.09001 * 109.46092 * 290.56831 * 24 23 21 40 40 H 1.09001 * 109.45594 * 170.61546 * 24 23 21 41 41 H 1.08996 * 109.51866 * 170.61909 * 25 24 23 42 42 H 1.08999 * 109.51747 * 50.44186 * 25 24 23 43 43 H 1.08997 * 109.71793 * 283.87843 * 26 20 19 44 44 H 1.09007 * 109.71785 * 44.52813 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0216 -2.6365 0.0001 11 6 5.5516 -2.6364 -0.0012 12 7 6.0399 -4.0177 -0.0017 13 6 7.3650 -4.2639 -0.0022 14 8 8.1537 -3.3415 -0.0028 15 6 7.8628 -5.6719 -0.0033 16 8 7.0741 -6.5945 -0.0032 17 7 9.1879 -5.9182 -0.0044 18 6 9.6544 -7.2375 -0.0049 19 6 8.8563 -8.3954 -0.0038 20 6 9.6793 -9.4614 -0.0109 21 7 10.9541 -9.0065 -0.0097 22 7 10.9148 -7.6104 -0.0027 23 6 12.1427 -9.8649 -0.0137 24 6 11.7324 -11.2786 0.4118 25 6 10.5326 -11.7371 -0.4223 26 6 9.2972 -10.9212 -0.0194 27 1 -0.4850 0.8401 -0.0004 28 1 3.8751 -0.6796 0.8895 29 1 3.8746 -0.6807 -0.8904 30 1 3.6579 -3.1505 -0.8897 31 1 3.6586 -3.1502 0.8902 32 1 5.9156 -2.1224 0.8884 33 1 5.9142 -2.1229 -0.8915 34 1 5.4097 -4.7550 -0.0016 35 1 9.8182 -5.1809 -0.0041 36 1 7.7767 -8.4247 -0.0021 37 1 12.8795 -9.4719 0.6868 38 1 12.5708 -9.8948 -1.0157 39 1 11.4609 -11.2757 1.4674 40 1 12.5668 -11.9619 0.2536 41 1 10.3454 -12.7953 -0.2400 42 1 10.7433 -11.5805 -1.4802 43 1 8.9669 -11.2207 0.9752 44 1 8.4958 -11.0874 -0.7394 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322919009.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:39 Heat of formation + Delta-G solvation = -25.078794 kcal Electronic energy + Delta-G solvation = -25410.804277 eV Core-core repulsion = 21556.519326 eV Total energy + Delta-G solvation = -3854.284951 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.82549 -41.74933 -39.86623 -37.72413 -37.19750 -35.75207 -35.07509 -33.41412 -33.31112 -30.98997 -29.49547 -28.95264 -26.67045 -25.09494 -24.24645 -23.18573 -22.37794 -22.15747 -21.18191 -20.38867 -19.23716 -18.79453 -18.13299 -17.57904 -17.42901 -17.10094 -16.78802 -16.54812 -16.18559 -16.08810 -15.29384 -15.13971 -15.09024 -14.95881 -14.76839 -14.68801 -14.51809 -13.81377 -13.78529 -13.65216 -13.21243 -12.88608 -12.73024 -12.68596 -12.15691 -11.94932 -11.89637 -11.86693 -11.76897 -11.75956 -11.59245 -11.58496 -11.31981 -10.83632 -10.74221 -10.33607 -9.82761 -9.38243 -8.27270 -6.31515 -0.04573 0.72879 0.82750 1.39356 1.40996 1.52581 1.58361 1.60681 2.13176 2.38417 2.46614 3.08645 3.18765 3.42088 3.64736 3.82680 3.86006 4.02104 4.13867 4.19370 4.32762 4.41816 4.47436 4.49228 4.65533 4.71258 4.79054 4.81884 4.87141 4.88067 4.98693 5.02739 5.03959 5.13392 5.15227 5.31025 5.48362 5.55204 5.57334 5.65906 5.72636 6.03568 6.12842 6.29338 6.49259 6.67161 6.75698 6.77443 7.33216 8.89197 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.039413 B = 0.001805 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.252893 B =15507.419890 C =16153.535326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.243 1.243 7 C -0.532 4.532 8 H 0.035 0.965 9 C -0.012 4.012 10 C -0.105 4.105 11 C 0.123 3.877 12 N -0.681 5.681 13 C 0.516 3.484 14 O -0.539 6.539 15 C 0.525 3.475 16 O -0.503 6.503 17 N -0.603 5.603 18 C 0.276 3.724 19 C -0.293 4.293 20 C 0.105 3.895 21 N -0.360 5.360 22 N -0.341 5.341 23 C 0.122 3.878 24 C -0.130 4.130 25 C -0.124 4.124 26 C -0.061 4.061 27 H 0.265 0.735 28 H 0.025 0.975 29 H 0.024 0.976 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.421 0.579 35 H 0.431 0.569 36 H 0.164 0.836 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.122 0.878 41 H 0.105 0.895 42 H 0.069 0.931 43 H 0.104 0.896 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.872 -26.525 0.057 38.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.773 3.227 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.167 1.167 7 C -0.570 4.570 8 H 0.054 0.946 9 C -0.050 4.050 10 C -0.143 4.143 11 C 0.001 3.999 12 N -0.333 5.333 13 C 0.295 3.705 14 O -0.417 6.417 15 C 0.306 3.694 16 O -0.375 6.375 17 N -0.253 5.253 18 C 0.022 3.978 19 C -0.323 4.323 20 C -0.024 4.024 21 N -0.145 5.145 22 N -0.171 5.171 23 C 0.003 3.997 24 C -0.168 4.168 25 C -0.161 4.161 26 C -0.100 4.100 27 H 0.074 0.926 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.259 0.741 35 H 0.270 0.730 36 H 0.181 0.819 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.140 0.860 41 H 0.123 0.877 42 H 0.088 0.912 43 H 0.122 0.878 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 29.006 -26.039 0.062 38.979 hybrid contribution -1.119 1.072 -0.029 1.550 sum 27.887 -24.967 0.033 37.431 Atomic orbital electron populations 1.70069 1.08330 1.28109 1.52727 1.26018 0.95600 1.03560 0.94212 0.85670 0.79624 0.78270 0.79172 1.19272 1.21275 1.16672 1.21488 0.92086 0.93204 1.50266 0.94634 1.19467 0.93916 0.94374 0.97210 1.21529 0.91856 0.98461 1.02441 1.21617 0.94637 0.80663 1.03015 1.45823 1.05902 1.10983 1.70604 1.19626 0.83918 0.88193 0.78729 1.90786 1.55623 1.45705 1.49590 1.20123 0.82115 0.89901 0.77293 1.90711 1.55242 1.45333 1.46222 1.42120 1.07444 1.05698 1.70069 1.19292 0.91865 0.85554 1.01102 1.21464 1.01893 0.89099 1.19873 1.21636 0.84124 0.98253 0.98378 1.48640 1.06788 1.02108 1.56996 1.77209 1.16527 0.91920 1.31482 1.22251 0.83974 0.89130 1.04313 1.22001 1.00720 0.93024 1.01030 1.21710 0.92905 1.01284 1.00230 1.20707 1.00059 0.84374 1.04833 0.92573 0.95625 0.95757 0.91649 0.91651 0.90645 0.90589 0.74114 0.72967 0.81903 0.88463 0.88758 0.90651 0.86024 0.87664 0.91250 0.87834 0.87939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.48 13.96 21.45 0.30 -59.18 16 2 C 0.00 0.16 5.47 84.65 0.46 0.62 16 3 Si 0.95 43.80 27.47 68.60 1.88 45.69 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 6 H -0.24 -10.32 6.54 99.48 0.65 -9.67 16 7 C -0.53 -30.02 9.66 25.60 0.25 -29.77 16 8 H 0.04 2.19 7.99 -2.91 -0.02 2.17 16 9 C -0.01 -0.52 4.04 29.85 0.12 -0.40 16 10 C -0.10 -3.68 5.27 30.60 0.16 -3.52 16 11 C 0.12 3.62 5.67 86.38 0.49 4.11 16 12 N -0.68 -17.85 5.55 -464.51 -2.58 -20.43 16 13 C 0.52 14.05 7.89 87.24 0.69 14.73 16 14 O -0.54 -16.77 16.48 -3.28 -0.05 -16.83 16 15 C 0.53 13.66 7.85 87.24 0.69 14.34 16 16 O -0.50 -14.11 13.60 -3.35 -0.05 -14.16 16 17 N -0.60 -14.86 5.43 -308.64 -1.68 -16.54 16 18 C 0.28 7.22 8.11 133.39 1.08 8.30 16 19 C -0.29 -7.12 9.55 22.04 0.21 -6.91 16 20 C 0.10 1.91 6.58 41.26 0.27 2.18 16 21 N -0.36 -6.73 4.04 -334.04 -1.35 -8.08 16 22 N -0.34 -8.57 12.64 -54.33 -0.69 -9.26 16 23 C 0.12 1.13 7.27 86.44 0.63 1.76 16 24 C -0.13 -0.42 5.93 30.72 0.18 -0.24 16 25 C -0.12 -0.47 5.97 30.79 0.18 -0.28 16 26 C -0.06 -0.54 6.29 30.06 0.19 -0.35 16 27 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 28 H 0.03 1.11 7.20 -2.38 -0.02 1.09 16 29 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 30 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.42 9.94 7.94 -92.71 -0.74 9.21 16 35 H 0.43 9.55 8.29 -92.70 -0.77 8.79 16 36 H 0.16 4.20 5.92 -2.91 -0.02 4.19 16 37 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.09 0.67 8.14 -2.38 -0.02 0.66 16 39 H 0.07 0.32 8.12 -2.39 -0.02 0.30 16 40 H 0.12 -0.24 8.14 -2.39 -0.02 -0.26 16 41 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16 42 H 0.07 0.33 8.12 -2.39 -0.02 0.31 16 43 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 Total: -1.00 -75.07 366.34 0.88 -74.19 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -0.52 Total: 20.02 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 5.60 Total: 4.57 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -5.99 Total: -113.49 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.10 Total: -30.98 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.69 kcal Total: -75.07 0.88 -74.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322919009.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.113 kcal (2) G-P(sol) polarization free energy of solvation -75.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds