Wall clock time and date at job start Tue Mar 31 2020 12:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99823 * 2 1 4 4 H 1.48500 * 109.46973 * 269.99545 * 3 2 1 5 5 H 1.48504 * 109.47027 * 29.99723 * 3 2 1 6 6 H 1.48497 * 109.46950 * 149.99762 * 3 2 1 7 7 C 1.37879 * 120.00216 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99756 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99926 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47210 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47298 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.46851 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99614 * 179.97438 * 12 11 10 14 14 O 1.21355 * 120.00214 * 0.02562 * 13 12 11 15 15 C 1.49456 * 119.99994 * 180.02562 * 13 12 11 16 16 O 1.21350 * 119.99386 * 0.02562 * 15 13 12 17 17 N 1.34773 * 119.99966 * 179.73002 * 15 13 12 18 18 C 1.46496 * 119.99973 * 180.02562 * 17 15 13 19 19 H 1.09006 * 109.71415 * 324.39342 * 18 17 15 20 20 C 1.53370 * 109.71894 * 203.74873 * 18 17 15 21 21 C 1.53017 * 109.75554 * 189.67042 * 20 18 17 22 22 C 1.53390 * 109.71964 * 71.72012 * 21 20 18 23 23 C 1.50885 * 108.19602 * 309.46545 * 22 21 20 24 24 C 1.34566 * 128.32548 * 196.73889 * 23 22 21 25 25 N 1.35204 * 107.61666 * 179.71432 * 24 23 22 26 26 H 0.97000 * 125.99907 * 180.02562 * 25 24 23 27 27 N 1.40311 * 107.98996 * 0.04162 * 25 24 23 28 28 C 1.30125 * 108.12602 * 0.04095 * 27 25 24 29 29 H 0.96996 * 120.00505 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47545 * 60.00592 * 9 7 2 31 31 H 1.08998 * 109.47669 * 300.00535 * 9 7 2 32 32 H 1.09001 * 109.46675 * 59.99702 * 10 9 7 33 33 H 1.09006 * 109.46802 * 300.00334 * 10 9 7 34 34 H 1.09000 * 109.46986 * 59.99805 * 11 10 9 35 35 H 1.09002 * 109.46857 * 299.99671 * 11 10 9 36 36 H 0.96996 * 120.00499 * 0.02562 * 12 11 10 37 37 H 0.97004 * 120.00018 * 359.97438 * 17 15 13 38 38 H 1.09005 * 109.42224 * 309.75596 * 20 18 17 39 39 H 1.09008 * 109.42655 * 69.58205 * 20 18 17 40 40 H 1.09000 * 109.42845 * 311.65245 * 21 20 18 41 41 H 1.08998 * 109.39528 * 191.77207 * 21 20 18 42 42 H 1.09004 * 109.71961 * 189.78853 * 22 21 20 43 43 H 1.08996 * 109.75529 * 69.16560 * 22 21 20 44 44 H 1.07998 * 126.19328 * 359.67844 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0022 12 7 6.0400 -4.0176 0.0027 13 6 7.3650 -4.2638 0.0033 14 8 8.1536 -3.3414 0.0039 15 6 7.8633 -5.6729 0.0032 16 8 7.0747 -6.5952 0.0022 17 7 9.1884 -5.9191 -0.0017 18 6 9.6767 -7.3002 -0.0023 19 1 9.0151 -7.9245 0.5983 20 6 11.0974 -7.3470 0.5736 21 6 11.6989 -8.7368 0.3543 22 6 12.0238 -8.9314 -1.1321 23 6 10.7991 -8.5657 -1.9339 24 6 10.5201 -8.8668 -3.2155 25 7 9.3103 -8.3378 -3.5061 26 1 8.8523 -8.3967 -4.3591 27 7 8.8341 -7.6883 -2.3571 28 6 9.7242 -7.8230 -1.4176 29 1 -0.4851 0.8400 -0.0004 30 1 3.8746 -0.6800 0.8912 31 1 3.8753 -0.6803 -0.8887 32 1 3.6586 -3.1501 -0.8892 33 1 3.6579 -3.1505 0.8908 34 1 5.9142 -2.1229 0.8927 35 1 5.9156 -2.1223 -0.8873 36 1 5.4097 -4.7549 0.0019 37 1 9.8187 -5.1817 -0.0056 38 1 11.7159 -6.6013 0.0739 39 1 11.0629 -7.1313 1.6416 40 1 10.9836 -9.4956 0.6714 41 1 12.6128 -8.8323 0.9407 42 1 12.2875 -9.9727 -1.3177 43 1 12.8551 -8.2857 -1.4152 44 1 11.1490 -9.4288 -3.8900 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323192537.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:31 Heat of formation + Delta-G solvation = -14.083775 kcal Electronic energy + Delta-G solvation = -25934.284993 eV Core-core repulsion = 22080.476822 eV Total energy + Delta-G solvation = -3853.808171 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.87323 -40.49450 -38.60844 -37.15438 -35.75814 -34.49889 -33.27448 -31.64056 -31.44586 -30.66966 -28.63509 -27.54886 -25.25105 -24.00091 -22.52350 -22.22484 -21.16664 -20.68613 -20.03855 -19.40184 -18.27297 -17.90321 -16.97075 -16.69181 -16.10543 -15.87896 -15.62474 -15.23531 -14.80301 -14.60908 -14.49880 -14.13305 -13.95665 -13.72537 -13.63704 -13.18570 -13.07056 -12.70745 -12.46766 -12.04796 -11.95889 -11.93735 -11.64069 -11.38482 -11.27652 -11.08174 -10.90111 -10.73299 -10.14346 -9.94937 -9.81629 -9.75387 -9.56016 -9.42963 -9.21950 -9.00988 -8.77788 -8.54635 -6.05002 -4.03799 1.46766 1.59566 2.15211 2.53636 2.59283 3.28568 3.31787 3.39253 3.43139 3.65375 4.03027 4.26902 4.42694 4.45060 4.49274 4.55013 4.77840 4.89082 4.99430 5.11536 5.28548 5.28676 5.29852 5.41600 5.48246 5.55445 5.60798 5.65623 5.77711 5.82515 5.96958 6.03926 6.21694 6.26525 6.42364 6.58399 6.76964 6.93855 6.97201 7.22626 7.35926 7.37215 7.43204 7.76420 7.77631 8.06644 8.51701 8.99269 9.56838 11.08210 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028079 B = 0.002073 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.963415 B =13502.245435 C =13904.231637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.115 4.115 11 C 0.112 3.888 12 N -0.691 5.691 13 C 0.503 3.497 14 O -0.529 6.529 15 C 0.514 3.486 16 O -0.506 6.506 17 N -0.699 5.699 18 C 0.229 3.771 19 H 0.109 0.891 20 C -0.123 4.123 21 C -0.114 4.114 22 C -0.041 4.041 23 C -0.234 4.234 24 C 0.058 3.942 25 N -0.483 5.483 26 H 0.440 0.560 27 N -0.256 5.256 28 C 0.062 3.938 29 H 0.263 0.737 30 H 0.019 0.981 31 H 0.015 0.985 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.413 0.587 37 H 0.413 0.587 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.972 -20.945 -2.803 35.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.091 0.909 9 C -0.048 4.048 10 C -0.153 4.153 11 C -0.010 4.010 12 N -0.343 5.343 13 C 0.283 3.717 14 O -0.406 6.406 15 C 0.295 3.705 16 O -0.379 6.379 17 N -0.352 5.352 18 C 0.122 3.878 19 H 0.127 0.873 20 C -0.161 4.161 21 C -0.152 4.152 22 C -0.080 4.080 23 C -0.246 4.246 24 C -0.088 4.088 25 N -0.192 5.192 26 H 0.284 0.716 27 N -0.078 5.078 28 C -0.109 4.109 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.033 0.967 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.249 0.751 37 H 0.250 0.750 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 27.633 -20.334 -3.108 34.449 hybrid contribution 0.776 0.502 -0.589 1.096 sum 28.409 -19.832 -3.697 34.843 Atomic orbital electron populations 1.69911 1.06305 1.26940 1.50977 1.25037 0.94762 0.99235 0.94507 0.86769 0.80392 0.83535 0.78555 1.20272 1.21372 1.18893 1.21095 0.89267 0.94566 1.51060 0.90933 1.19505 0.97348 0.91292 0.96693 1.21742 0.90180 1.01219 1.02177 1.21831 0.96620 0.80178 1.02407 1.46000 1.06115 1.11028 1.71175 1.20028 0.83921 0.89033 0.78734 1.90746 1.55294 1.45554 1.48992 1.20243 0.83240 0.89815 0.77232 1.90774 1.55013 1.45611 1.46522 1.45671 1.06905 1.08570 1.74100 1.19464 0.96725 0.82458 0.89168 0.87304 1.21845 0.93442 0.99041 1.01777 1.21516 1.01254 0.96204 0.96192 1.20015 0.93621 1.01133 0.93190 1.20075 1.00045 1.09798 0.94689 1.22069 0.89214 1.00235 0.97262 1.46492 1.15654 1.44115 1.12923 0.71629 1.77230 1.21244 1.16746 0.92583 1.22632 0.92647 0.99124 0.96516 0.92701 0.96227 0.96703 0.91843 0.91782 0.91117 0.91209 0.75140 0.75009 0.90510 0.89895 0.91212 0.90635 0.91021 0.91113 0.80726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.94 13.96 55.43 0.77 -27.16 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -14.84 9.66 -34.44 -0.33 -15.17 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.12 -2.20 5.27 -26.73 -0.14 -2.34 16 11 C 0.11 1.87 5.67 -4.04 -0.02 1.85 16 12 N -0.69 -10.52 5.55 -60.73 -0.34 -10.86 16 13 C 0.50 7.70 7.89 -11.58 -0.09 7.61 16 14 O -0.53 -8.99 16.48 5.49 0.09 -8.90 16 15 C 0.51 7.13 7.85 -11.58 -0.09 7.04 16 16 O -0.51 -8.02 16.16 5.50 0.09 -7.93 16 17 N -0.70 -7.55 5.08 -55.06 -0.28 -7.83 16 18 C 0.23 2.11 2.81 -68.77 -0.19 1.92 16 19 H 0.11 1.10 7.61 -51.93 -0.40 0.70 16 20 C -0.12 -0.69 5.34 -26.53 -0.14 -0.83 16 21 C -0.11 -0.51 5.87 -26.52 -0.16 -0.67 16 22 C -0.04 -0.20 6.28 -27.59 -0.17 -0.38 16 23 C -0.23 -1.86 5.89 -104.98 -0.62 -2.48 16 24 C 0.06 0.39 11.95 -17.36 -0.21 0.19 16 25 N -0.48 -4.21 7.37 30.35 0.22 -3.99 16 26 H 0.44 2.59 8.96 -182.44 -1.64 0.95 16 27 N -0.26 -3.26 12.68 33.75 0.43 -2.83 16 28 C 0.06 0.66 6.66 -82.35 -0.55 0.11 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 31 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.41 5.86 7.94 -40.82 -0.32 5.53 16 37 H 0.41 3.94 8.07 -40.82 -0.33 3.61 16 38 H 0.08 0.40 8.10 -51.93 -0.42 -0.02 16 39 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 40 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 41 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.18 0.50 8.06 -52.49 -0.42 0.08 16 LS Contribution 369.22 15.07 5.56 5.56 Total: -1.00 -36.23 369.22 -8.73 -44.95 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -7.68 Total: 3.53 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -2.93 Total: -1.68 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.81 Total: -52.67 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: 0.18 Total: -16.83 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.23 -8.73 -44.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323192537.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.871 kcal (2) G-P(sol) polarization free energy of solvation -36.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds