Wall clock time and date at job start Tue Mar 31 2020 12:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99823 * 2 1 4 4 H 1.48500 * 109.46973 * 269.99545 * 3 2 1 5 5 H 1.48504 * 109.47027 * 29.99723 * 3 2 1 6 6 H 1.48497 * 109.46950 * 149.99762 * 3 2 1 7 7 C 1.37879 * 120.00216 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99756 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99926 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47210 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47298 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.46851 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99614 * 179.97438 * 12 11 10 14 14 O 1.21355 * 120.00214 * 0.02562 * 13 12 11 15 15 C 1.49456 * 119.99994 * 180.02562 * 13 12 11 16 16 O 1.21350 * 119.99386 * 0.02562 * 15 13 12 17 17 N 1.34773 * 119.99966 * 179.73002 * 15 13 12 18 18 C 1.46496 * 119.99973 * 180.02562 * 17 15 13 19 19 H 1.09006 * 109.71415 * 324.39342 * 18 17 15 20 20 C 1.53370 * 109.71894 * 203.74873 * 18 17 15 21 21 C 1.53017 * 109.75554 * 189.67042 * 20 18 17 22 22 C 1.53390 * 109.71964 * 71.72012 * 21 20 18 23 23 C 1.50885 * 108.19602 * 309.46545 * 22 21 20 24 24 C 1.34566 * 128.32548 * 196.73889 * 23 22 21 25 25 N 1.35204 * 107.61666 * 179.71432 * 24 23 22 26 26 H 0.97000 * 125.99907 * 180.02562 * 25 24 23 27 27 N 1.40311 * 107.98996 * 0.04162 * 25 24 23 28 28 C 1.30125 * 108.12602 * 0.04095 * 27 25 24 29 29 H 0.96996 * 120.00505 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47545 * 60.00592 * 9 7 2 31 31 H 1.08998 * 109.47669 * 300.00535 * 9 7 2 32 32 H 1.09001 * 109.46675 * 59.99702 * 10 9 7 33 33 H 1.09006 * 109.46802 * 300.00334 * 10 9 7 34 34 H 1.09000 * 109.46986 * 59.99805 * 11 10 9 35 35 H 1.09002 * 109.46857 * 299.99671 * 11 10 9 36 36 H 0.96996 * 120.00499 * 0.02562 * 12 11 10 37 37 H 0.97004 * 120.00018 * 359.97438 * 17 15 13 38 38 H 1.09005 * 109.42224 * 309.75596 * 20 18 17 39 39 H 1.09008 * 109.42655 * 69.58205 * 20 18 17 40 40 H 1.09000 * 109.42845 * 311.65245 * 21 20 18 41 41 H 1.08998 * 109.39528 * 191.77207 * 21 20 18 42 42 H 1.09004 * 109.71961 * 189.78853 * 22 21 20 43 43 H 1.08996 * 109.75529 * 69.16560 * 22 21 20 44 44 H 1.07998 * 126.19328 * 359.67844 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0022 12 7 6.0400 -4.0176 0.0027 13 6 7.3650 -4.2638 0.0033 14 8 8.1536 -3.3414 0.0039 15 6 7.8633 -5.6729 0.0032 16 8 7.0747 -6.5952 0.0022 17 7 9.1884 -5.9191 -0.0017 18 6 9.6767 -7.3002 -0.0023 19 1 9.0151 -7.9245 0.5983 20 6 11.0974 -7.3470 0.5736 21 6 11.6989 -8.7368 0.3543 22 6 12.0238 -8.9314 -1.1321 23 6 10.7991 -8.5657 -1.9339 24 6 10.5201 -8.8668 -3.2155 25 7 9.3103 -8.3378 -3.5061 26 1 8.8523 -8.3967 -4.3591 27 7 8.8341 -7.6883 -2.3571 28 6 9.7242 -7.8230 -1.4176 29 1 -0.4851 0.8400 -0.0004 30 1 3.8746 -0.6800 0.8912 31 1 3.8753 -0.6803 -0.8887 32 1 3.6586 -3.1501 -0.8892 33 1 3.6579 -3.1505 0.8908 34 1 5.9142 -2.1229 0.8927 35 1 5.9156 -2.1223 -0.8873 36 1 5.4097 -4.7549 0.0019 37 1 9.8187 -5.1817 -0.0056 38 1 11.7159 -6.6013 0.0739 39 1 11.0629 -7.1313 1.6416 40 1 10.9836 -9.4956 0.6714 41 1 12.6128 -8.8323 0.9407 42 1 12.2875 -9.9727 -1.3177 43 1 12.8551 -8.2857 -1.4152 44 1 11.1490 -9.4288 -3.8900 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323192537.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:30 Heat of formation + Delta-G solvation = -42.394212 kcal Electronic energy + Delta-G solvation = -25935.512626 eV Core-core repulsion = 22080.476822 eV Total energy + Delta-G solvation = -3855.035804 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.52304 -41.61059 -39.73022 -37.86471 -37.17179 -35.47006 -34.98190 -33.30818 -32.35076 -31.23974 -29.53857 -29.00343 -26.31473 -25.01435 -23.84419 -22.83700 -22.30766 -21.82825 -21.22591 -20.14635 -19.38036 -18.83754 -18.48423 -17.99252 -17.21082 -16.88814 -16.53092 -16.41138 -16.07239 -15.94800 -15.35618 -15.13075 -14.88545 -14.78622 -14.71231 -14.36941 -13.94899 -13.82583 -13.63678 -13.60301 -13.02151 -12.86678 -12.74522 -12.70540 -12.40140 -11.92112 -11.82291 -11.78675 -11.67023 -11.62208 -11.35129 -11.33959 -10.76376 -10.72079 -10.50936 -10.44693 -10.30120 -9.33341 -8.29178 -6.33763 0.31203 0.94148 1.26498 1.37756 1.39321 1.51422 1.80286 1.95160 2.16452 2.36826 2.62347 3.06254 3.37095 3.50817 3.73132 3.98787 3.99799 4.05594 4.15121 4.36385 4.41907 4.45842 4.47030 4.61736 4.78759 4.80025 4.84346 4.89710 4.97486 5.00042 5.14041 5.15819 5.22626 5.29994 5.33494 5.44232 5.50241 5.53663 5.63875 5.70973 5.88388 6.27125 6.30184 6.47711 6.67448 6.74210 6.75107 6.91080 7.30771 8.87382 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028079 B = 0.002073 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.963415 B =13502.245435 C =13904.231637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.001 3.999 3 Si 0.951 3.049 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.243 1.243 7 C -0.533 4.533 8 H 0.034 0.966 9 C -0.010 4.010 10 C -0.104 4.104 11 C 0.124 3.876 12 N -0.689 5.689 13 C 0.504 3.496 14 O -0.545 6.545 15 C 0.516 3.484 16 O -0.531 6.531 17 N -0.683 5.683 18 C 0.223 3.777 19 H 0.095 0.905 20 C -0.115 4.115 21 C -0.112 4.112 22 C -0.038 4.038 23 C -0.247 4.247 24 C 0.067 3.933 25 N -0.484 5.484 26 H 0.448 0.552 27 N -0.319 5.319 28 C 0.045 3.955 29 H 0.266 0.734 30 H 0.027 0.973 31 H 0.023 0.977 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.417 0.583 37 H 0.420 0.580 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.062 0.938 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.698 -21.189 -2.920 39.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.775 3.225 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.167 1.167 7 C -0.571 4.571 8 H 0.052 0.948 9 C -0.048 4.048 10 C -0.142 4.142 11 C 0.002 3.998 12 N -0.341 5.341 13 C 0.285 3.715 14 O -0.424 6.424 15 C 0.297 3.703 16 O -0.407 6.407 17 N -0.336 5.336 18 C 0.117 3.883 19 H 0.112 0.888 20 C -0.154 4.154 21 C -0.150 4.150 22 C -0.076 4.076 23 C -0.259 4.259 24 C -0.079 4.079 25 N -0.194 5.194 26 H 0.293 0.707 27 N -0.142 5.142 28 C -0.124 4.124 29 H 0.075 0.925 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.254 0.746 37 H 0.258 0.742 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.081 0.919 41 H 0.117 0.883 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 31.401 -20.603 -3.225 37.695 hybrid contribution -0.412 0.450 -0.604 0.859 sum 30.988 -20.153 -3.828 37.163 Atomic orbital electron populations 1.70069 1.08331 1.28177 1.52631 1.26050 0.95660 1.03664 0.94152 0.85639 0.79599 0.78101 0.79206 1.19242 1.21075 1.16674 1.21467 0.92018 0.93199 1.50416 0.94807 1.19457 0.93974 0.94184 0.97199 1.21525 0.91968 0.98569 1.02177 1.21556 0.94580 0.81011 1.02694 1.45897 1.06457 1.10625 1.71120 1.20268 0.83596 0.89592 0.78036 1.90730 1.55624 1.46184 1.49815 1.19996 0.84151 0.88730 0.77456 1.90765 1.55802 1.45901 1.48253 1.45677 1.05853 1.09816 1.72259 1.19746 0.98569 0.80917 0.89053 0.88755 1.21876 0.90968 1.00231 1.02291 1.21545 1.01973 0.94986 0.96456 1.20108 0.92471 1.02292 0.92773 1.20524 1.00478 1.09510 0.95362 1.22786 0.88434 0.99033 0.97616 1.46543 1.16422 1.43870 1.12581 0.70682 1.77129 1.23317 1.19360 0.94346 1.22923 0.93357 0.99599 0.96556 0.92509 0.95507 0.95836 0.92061 0.91764 0.90685 0.91083 0.74592 0.74221 0.89789 0.88631 0.91901 0.88254 0.89425 0.89990 0.76640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.27 13.96 21.45 0.30 -59.98 16 2 C 0.00 0.08 5.47 84.65 0.46 0.54 16 3 Si 0.95 44.49 27.47 68.60 1.88 46.37 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.24 -10.48 6.54 99.48 0.65 -9.83 16 7 C -0.53 -30.80 9.66 25.60 0.25 -30.56 16 8 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 9 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 10 C -0.10 -3.93 5.27 30.60 0.16 -3.77 16 11 C 0.12 4.00 5.67 86.38 0.49 4.49 16 12 N -0.69 -20.61 5.55 -464.41 -2.58 -23.19 16 13 C 0.50 15.21 7.89 87.27 0.69 15.90 16 14 O -0.55 -18.04 16.48 -3.26 -0.05 -18.09 16 15 C 0.52 14.38 7.85 87.27 0.69 15.06 16 16 O -0.53 -17.24 16.16 -3.25 -0.05 -17.29 16 17 N -0.68 -14.52 5.08 -446.46 -2.27 -16.79 16 18 C 0.22 4.03 2.81 44.45 0.12 4.15 16 19 H 0.09 1.96 7.61 -2.38 -0.02 1.94 16 20 C -0.12 -1.07 5.34 30.72 0.16 -0.91 16 21 C -0.11 -0.72 5.87 30.73 0.18 -0.53 16 22 C -0.04 -0.27 6.28 30.04 0.19 -0.08 16 23 C -0.25 -3.48 5.89 -20.10 -0.12 -3.60 16 24 C 0.07 0.77 11.95 83.33 1.00 1.77 16 25 N -0.48 -8.12 7.37 -57.88 -0.43 -8.55 16 26 H 0.45 5.10 8.96 -213.18 -1.91 3.19 16 27 N -0.32 -8.18 12.68 -47.14 -0.60 -8.77 16 28 C 0.05 0.94 6.66 43.44 0.29 1.23 16 29 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 30 H 0.03 1.20 7.20 -2.39 -0.02 1.18 16 31 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 32 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 34 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.42 11.82 7.94 -92.71 -0.74 11.09 16 37 H 0.42 7.67 8.07 -92.71 -0.75 6.93 16 38 H 0.08 0.68 8.10 -2.38 -0.02 0.66 16 39 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.06 0.51 8.10 -2.39 -0.02 0.49 16 41 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 42 H 0.09 0.35 8.14 -2.38 -0.02 0.33 16 43 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.22 0.43 8.06 -2.91 -0.02 0.41 16 Total: -1.00 -80.15 369.22 -1.51 -81.66 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -2.40 Total: 21.26 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: 4.68 Total: 3.37 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -5.57 Total: -117.29 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.11 Total: -35.38 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.37 kcal Total: -80.15 -1.51 -81.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323192537.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.265 kcal (2) G-P(sol) polarization free energy of solvation -80.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds