Wall clock time and date at job start Tue Mar 31 2020 12:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 120.00096 * 2 1 4 4 H 1.48500 * 109.47217 * 270.00224 * 3 2 1 5 5 H 1.48503 * 109.47331 * 30.00173 * 3 2 1 6 6 H 1.48494 * 109.47092 * 150.00020 * 3 2 1 7 7 C 1.37874 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00134 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00135 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47366 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47367 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47427 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00210 * 179.97438 * 12 11 10 14 14 O 1.21348 * 119.99610 * 0.02562 * 13 12 11 15 15 C 1.49448 * 119.99767 * 179.97438 * 13 12 11 16 16 O 1.21341 * 120.00524 * 359.72844 * 15 13 12 17 17 N 1.34784 * 119.99762 * 179.97438 * 15 13 12 18 18 C 1.46499 * 119.99893 * 179.72897 * 17 15 13 19 19 H 1.08996 * 109.71654 * 35.00006 * 18 17 15 20 20 C 1.53368 * 109.71405 * 155.60454 * 18 17 15 21 21 C 1.53046 * 109.74213 * 170.27969 * 20 18 17 22 22 C 1.53385 * 109.75941 * 288.33975 * 21 20 18 23 23 C 1.50875 * 108.19790 * 50.52276 * 22 21 20 24 24 C 1.34575 * 128.32893 * 163.26003 * 23 22 21 25 25 N 1.35204 * 107.61731 * 180.28540 * 24 23 22 26 26 H 0.96997 * 125.99762 * 179.97438 * 25 24 23 27 27 N 1.40309 * 107.99362 * 359.96164 * 25 24 23 28 28 C 1.30127 * 108.12708 * 359.95518 * 27 25 24 29 29 H 0.97001 * 119.99445 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47083 * 59.99436 * 9 7 2 31 31 H 1.09001 * 109.46875 * 299.99700 * 9 7 2 32 32 H 1.08998 * 109.47353 * 59.99757 * 10 9 7 33 33 H 1.09006 * 109.47395 * 300.00012 * 10 9 7 34 34 H 1.08998 * 109.47065 * 59.99602 * 11 10 9 35 35 H 1.09001 * 109.46892 * 299.99866 * 11 10 9 36 36 H 0.97004 * 119.99753 * 359.97438 * 12 11 10 37 37 H 0.97005 * 119.99846 * 359.72685 * 17 15 13 38 38 H 1.09000 * 109.42720 * 290.40658 * 20 18 17 39 39 H 1.09004 * 109.42720 * 50.24117 * 20 18 17 40 40 H 1.08995 * 109.42038 * 168.24052 * 21 20 18 41 41 H 1.09000 * 109.35444 * 48.39391 * 21 20 18 42 42 H 1.09000 * 109.71591 * 290.84767 * 22 21 20 43 43 H 1.09004 * 109.75706 * 170.21880 * 22 21 20 44 44 H 1.08002 * 126.19003 * 0.23940 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5515 -2.6367 -0.0001 12 7 6.0398 -4.0179 -0.0009 13 6 7.3649 -4.2642 -0.0016 14 8 8.1534 -3.3418 -0.0011 15 6 7.8629 -5.6732 -0.0017 16 8 7.0744 -6.5955 0.0037 17 7 9.1881 -5.9196 -0.0030 18 6 9.6763 -7.3008 0.0029 19 1 9.0054 -7.9305 -0.5814 20 6 11.0874 -7.3533 -0.5958 21 6 11.6927 -8.7410 -0.3718 22 6 12.0408 -8.9217 1.1110 23 6 10.8289 -8.5483 1.9284 24 6 10.5700 -8.8373 3.2170 25 7 9.3649 -8.3053 3.5216 26 1 8.9203 -8.3561 4.3821 27 7 8.8706 -7.6666 2.3742 28 6 9.7459 -7.8102 1.4221 29 1 -0.4849 0.8401 0.0004 30 1 3.8745 -0.6808 0.8905 31 1 3.8752 -0.6798 -0.8895 32 1 3.6585 -3.1502 -0.8903 33 1 3.6578 -3.1507 0.8897 34 1 5.9149 -2.1229 0.8898 35 1 5.9148 -2.1228 -0.8901 36 1 5.4094 -4.7551 -0.0009 37 1 9.8184 -5.1823 -0.0077 38 1 11.0354 -7.1480 -1.6650 39 1 11.7140 -6.6030 -0.1134 40 1 12.5970 -8.8430 -0.9717 41 1 10.9718 -9.5020 -0.6704 42 1 12.8762 -8.2729 1.3744 43 1 12.3078 -9.9610 1.3028 44 1 11.2088 -9.3941 3.8865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323192538.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:34 Heat of formation + Delta-G solvation = -14.150864 kcal Electronic energy + Delta-G solvation = -25930.152051 eV Core-core repulsion = 22076.340970 eV Total energy + Delta-G solvation = -3853.811080 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.87329 -40.49773 -38.61118 -37.15466 -35.75876 -34.49968 -33.27501 -31.64218 -31.44583 -30.67092 -28.63640 -27.54926 -25.25260 -24.00170 -22.52257 -22.22555 -21.16784 -20.68704 -20.04383 -19.40249 -18.27214 -17.90558 -16.97293 -16.69251 -16.10870 -15.87571 -15.62558 -15.23700 -14.80751 -14.60439 -14.50255 -14.13189 -13.95704 -13.72234 -13.64312 -13.18783 -13.07361 -12.70748 -12.46681 -12.04712 -11.96268 -11.93536 -11.64354 -11.38288 -11.27988 -11.08214 -10.90071 -10.73492 -10.14436 -9.95056 -9.81847 -9.75433 -9.56147 -9.43071 -9.21918 -9.01040 -8.77904 -8.54580 -6.05036 -4.03800 1.46574 1.59328 2.15036 2.53418 2.59129 3.28434 3.31776 3.39264 3.43187 3.65283 4.02876 4.27003 4.42633 4.45079 4.49124 4.54873 4.77872 4.89019 4.99364 5.11551 5.28542 5.28672 5.29771 5.41609 5.48195 5.55407 5.60774 5.65586 5.77629 5.82439 5.96960 6.03837 6.21664 6.26348 6.42331 6.58363 6.76950 6.93686 6.97012 7.22615 7.35920 7.36966 7.43080 7.76388 7.77486 8.06526 8.51706 8.99242 9.56842 11.08181 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028111 B = 0.002071 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.819123 B =13519.029878 C =13910.142122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.115 4.115 11 C 0.112 3.888 12 N -0.691 5.691 13 C 0.503 3.497 14 O -0.529 6.529 15 C 0.514 3.486 16 O -0.506 6.506 17 N -0.699 5.699 18 C 0.228 3.772 19 H 0.110 0.890 20 C -0.123 4.123 21 C -0.114 4.114 22 C -0.041 4.041 23 C -0.234 4.234 24 C 0.058 3.942 25 N -0.483 5.483 26 H 0.440 0.560 27 N -0.257 5.257 28 C 0.062 3.938 29 H 0.263 0.737 30 H 0.019 0.981 31 H 0.015 0.985 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.413 0.587 37 H 0.413 0.587 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.019 -20.920 2.802 35.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.091 0.909 9 C -0.048 4.048 10 C -0.153 4.153 11 C -0.010 4.010 12 N -0.343 5.343 13 C 0.283 3.717 14 O -0.406 6.406 15 C 0.295 3.705 16 O -0.380 6.380 17 N -0.352 5.352 18 C 0.122 3.878 19 H 0.127 0.873 20 C -0.161 4.161 21 C -0.152 4.152 22 C -0.080 4.080 23 C -0.246 4.246 24 C -0.088 4.088 25 N -0.192 5.192 26 H 0.284 0.716 27 N -0.078 5.078 28 C -0.109 4.109 29 H 0.073 0.927 30 H 0.037 0.963 31 H 0.033 0.967 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.249 0.751 37 H 0.250 0.750 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 27.684 -20.306 3.133 34.476 hybrid contribution 0.784 0.508 0.536 1.077 sum 28.468 -19.799 3.670 34.870 Atomic orbital electron populations 1.69919 1.06303 1.26928 1.50984 1.25038 0.94768 0.99240 0.94510 0.86766 0.80379 0.83523 0.78565 1.20238 1.21388 1.18916 1.21095 0.89268 0.94567 1.51051 0.90935 1.19503 0.97351 0.91293 0.96695 1.21739 0.90178 1.01216 1.02178 1.21832 0.96622 0.80175 1.02408 1.46002 1.06115 1.11030 1.71175 1.20021 0.83921 0.89028 0.78741 1.90744 1.55298 1.45547 1.48984 1.20243 0.83238 0.89816 0.77207 1.90770 1.55032 1.45611 1.46553 1.45674 1.06900 1.08580 1.74085 1.19463 0.96804 0.82556 0.89012 0.87271 1.21850 0.93566 0.99055 1.01636 1.21519 1.01204 0.96242 0.96206 1.20012 0.93750 1.01115 0.93077 1.20079 1.00073 1.09921 0.94530 1.22072 0.89398 1.00198 0.97105 1.46488 1.15809 1.44367 1.12511 0.71628 1.77226 1.21114 1.17010 0.92500 1.22635 0.92727 0.99120 0.96424 0.92707 0.96267 0.96659 0.91807 0.91817 0.91201 0.91125 0.75141 0.75008 0.89888 0.90520 0.90632 0.91224 0.91115 0.91010 0.80720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.94 13.96 55.43 0.77 -27.16 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.52 -14.83 9.66 -34.44 -0.33 -15.17 16 8 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 9 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16 10 C -0.12 -2.20 5.27 -26.73 -0.14 -2.34 16 11 C 0.11 1.87 5.67 -4.04 -0.02 1.85 16 12 N -0.69 -10.52 5.55 -60.73 -0.34 -10.86 16 13 C 0.50 7.70 7.89 -11.59 -0.09 7.61 16 14 O -0.53 -8.99 16.48 5.50 0.09 -8.90 16 15 C 0.51 7.13 7.86 -11.58 -0.09 7.04 16 16 O -0.51 -8.02 16.15 5.50 0.09 -7.93 16 17 N -0.70 -7.55 5.08 -55.06 -0.28 -7.83 16 18 C 0.23 2.11 2.82 -68.77 -0.19 1.92 16 19 H 0.11 1.11 7.59 -51.93 -0.39 0.71 16 20 C -0.12 -0.69 5.35 -26.52 -0.14 -0.83 16 21 C -0.11 -0.51 5.87 -26.51 -0.16 -0.67 16 22 C -0.04 -0.20 6.28 -27.60 -0.17 -0.38 16 23 C -0.23 -1.86 5.89 -104.98 -0.62 -2.48 16 24 C 0.06 0.39 11.95 -17.36 -0.21 0.19 16 25 N -0.48 -4.20 7.37 30.35 0.22 -3.98 16 26 H 0.44 2.58 8.96 -182.44 -1.64 0.94 16 27 N -0.26 -3.26 12.68 33.75 0.43 -2.83 16 28 C 0.06 0.66 6.67 -82.34 -0.55 0.11 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 31 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.41 5.85 7.95 -40.82 -0.32 5.53 16 37 H 0.41 3.95 8.08 -40.82 -0.33 3.62 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.40 8.10 -51.93 -0.42 -0.02 16 40 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.18 0.50 8.06 -52.49 -0.42 0.07 16 LS Contribution 369.21 15.07 5.56 5.56 Total: -1.00 -36.23 369.21 -8.73 -44.95 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -7.68 Total: 3.52 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -2.93 Total: -1.68 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.81 Total: -52.66 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: 0.18 Total: -16.83 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.23 -8.73 -44.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323192538.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.802 kcal (2) G-P(sol) polarization free energy of solvation -36.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds