Wall clock time and date at job start Tue Mar 31 2020 12:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 120.00096 * 2 1 4 4 H 1.48500 * 109.47217 * 270.00224 * 3 2 1 5 5 H 1.48503 * 109.47331 * 30.00173 * 3 2 1 6 6 H 1.48494 * 109.47092 * 150.00020 * 3 2 1 7 7 C 1.37874 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00134 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00135 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47366 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47367 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47427 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00210 * 179.97438 * 12 11 10 14 14 O 1.21348 * 119.99610 * 0.02562 * 13 12 11 15 15 C 1.49448 * 119.99767 * 179.97438 * 13 12 11 16 16 O 1.21341 * 120.00524 * 359.72844 * 15 13 12 17 17 N 1.34784 * 119.99762 * 179.97438 * 15 13 12 18 18 C 1.46499 * 119.99893 * 179.72897 * 17 15 13 19 19 H 1.08996 * 109.71654 * 35.00006 * 18 17 15 20 20 C 1.53368 * 109.71405 * 155.60454 * 18 17 15 21 21 C 1.53046 * 109.74213 * 170.27969 * 20 18 17 22 22 C 1.53385 * 109.75941 * 288.33975 * 21 20 18 23 23 C 1.50875 * 108.19790 * 50.52276 * 22 21 20 24 24 C 1.34575 * 128.32893 * 163.26003 * 23 22 21 25 25 N 1.35204 * 107.61731 * 180.28540 * 24 23 22 26 26 H 0.96997 * 125.99762 * 179.97438 * 25 24 23 27 27 N 1.40309 * 107.99362 * 359.96164 * 25 24 23 28 28 C 1.30127 * 108.12708 * 359.95518 * 27 25 24 29 29 H 0.97001 * 119.99445 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47083 * 59.99436 * 9 7 2 31 31 H 1.09001 * 109.46875 * 299.99700 * 9 7 2 32 32 H 1.08998 * 109.47353 * 59.99757 * 10 9 7 33 33 H 1.09006 * 109.47395 * 300.00012 * 10 9 7 34 34 H 1.08998 * 109.47065 * 59.99602 * 11 10 9 35 35 H 1.09001 * 109.46892 * 299.99866 * 11 10 9 36 36 H 0.97004 * 119.99753 * 359.97438 * 12 11 10 37 37 H 0.97005 * 119.99846 * 359.72685 * 17 15 13 38 38 H 1.09000 * 109.42720 * 290.40658 * 20 18 17 39 39 H 1.09004 * 109.42720 * 50.24117 * 20 18 17 40 40 H 1.08995 * 109.42038 * 168.24052 * 21 20 18 41 41 H 1.09000 * 109.35444 * 48.39391 * 21 20 18 42 42 H 1.09000 * 109.71591 * 290.84767 * 22 21 20 43 43 H 1.09004 * 109.75706 * 170.21880 * 22 21 20 44 44 H 1.08002 * 126.19003 * 0.23940 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5515 -2.6367 -0.0001 12 7 6.0398 -4.0179 -0.0009 13 6 7.3649 -4.2642 -0.0016 14 8 8.1534 -3.3418 -0.0011 15 6 7.8629 -5.6732 -0.0017 16 8 7.0744 -6.5955 0.0037 17 7 9.1881 -5.9196 -0.0030 18 6 9.6763 -7.3008 0.0029 19 1 9.0054 -7.9305 -0.5814 20 6 11.0874 -7.3533 -0.5958 21 6 11.6927 -8.7410 -0.3718 22 6 12.0408 -8.9217 1.1110 23 6 10.8289 -8.5483 1.9284 24 6 10.5700 -8.8373 3.2170 25 7 9.3649 -8.3053 3.5216 26 1 8.9203 -8.3561 4.3821 27 7 8.8706 -7.6666 2.3742 28 6 9.7459 -7.8102 1.4221 29 1 -0.4849 0.8401 0.0004 30 1 3.8745 -0.6808 0.8905 31 1 3.8752 -0.6798 -0.8895 32 1 3.6585 -3.1502 -0.8903 33 1 3.6578 -3.1507 0.8897 34 1 5.9149 -2.1229 0.8898 35 1 5.9148 -2.1228 -0.8901 36 1 5.4094 -4.7551 -0.0009 37 1 9.8184 -5.1823 -0.0077 38 1 11.0354 -7.1480 -1.6650 39 1 11.7140 -6.6030 -0.1134 40 1 12.5970 -8.8430 -0.9717 41 1 10.9718 -9.5020 -0.6704 42 1 12.8762 -8.2729 1.3744 43 1 12.3078 -9.9610 1.3028 44 1 11.2088 -9.3941 3.8865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323192538.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:33 Heat of formation + Delta-G solvation = -42.457411 kcal Electronic energy + Delta-G solvation = -25931.379515 eV Core-core repulsion = 22076.340970 eV Total energy + Delta-G solvation = -3855.038545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.52270 -41.61384 -39.73366 -37.86516 -37.17242 -35.47025 -34.98236 -33.30838 -32.35202 -31.24082 -29.53962 -29.00384 -26.31641 -25.01521 -23.84414 -22.83634 -22.30772 -21.82880 -21.23133 -20.15029 -19.37806 -18.83713 -18.48580 -17.99541 -17.21570 -16.88374 -16.53025 -16.41783 -16.06453 -15.95343 -15.35875 -15.13053 -14.88747 -14.78472 -14.71378 -14.36929 -13.95233 -13.82698 -13.63999 -13.60161 -13.02317 -12.86625 -12.74180 -12.70679 -12.40323 -11.92322 -11.82203 -11.78827 -11.67378 -11.62164 -11.35118 -11.34066 -10.76244 -10.72489 -10.51128 -10.44657 -10.30173 -9.33381 -8.29211 -6.33763 0.31005 0.93952 1.26380 1.37773 1.39415 1.51425 1.80133 1.95018 2.16293 2.36864 2.62236 3.06254 3.36936 3.50616 3.73267 3.98737 3.99760 4.05455 4.15108 4.36450 4.41704 4.45867 4.46976 4.61710 4.78753 4.79987 4.84320 4.89679 4.97386 5.00021 5.13948 5.15791 5.22534 5.29992 5.33461 5.44235 5.50172 5.53653 5.63891 5.70858 5.88222 6.27124 6.30046 6.47623 6.67269 6.74166 6.74971 6.90880 7.30785 8.87356 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028111 B = 0.002071 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.819123 B =13519.029878 C =13910.142122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.001 3.999 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.245 1.245 7 C -0.533 4.533 8 H 0.034 0.966 9 C -0.010 4.010 10 C -0.104 4.104 11 C 0.124 3.876 12 N -0.689 5.689 13 C 0.505 3.495 14 O -0.545 6.545 15 C 0.517 3.483 16 O -0.532 6.532 17 N -0.683 5.683 18 C 0.223 3.777 19 H 0.095 0.905 20 C -0.115 4.115 21 C -0.112 4.112 22 C -0.038 4.038 23 C -0.247 4.247 24 C 0.067 3.933 25 N -0.484 5.484 26 H 0.448 0.552 27 N -0.319 5.319 28 C 0.045 3.955 29 H 0.266 0.734 30 H 0.024 0.976 31 H 0.026 0.974 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.417 0.583 37 H 0.420 0.580 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.742 -21.164 2.884 39.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.168 1.168 7 C -0.571 4.571 8 H 0.052 0.948 9 C -0.048 4.048 10 C -0.142 4.142 11 C 0.002 3.998 12 N -0.341 5.341 13 C 0.285 3.715 14 O -0.423 6.423 15 C 0.297 3.703 16 O -0.408 6.408 17 N -0.336 5.336 18 C 0.117 3.883 19 H 0.113 0.887 20 C -0.154 4.154 21 C -0.150 4.150 22 C -0.076 4.076 23 C -0.259 4.259 24 C -0.079 4.079 25 N -0.194 5.194 26 H 0.293 0.707 27 N -0.142 5.142 28 C -0.124 4.124 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.254 0.746 37 H 0.258 0.742 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.117 0.883 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 31.450 -20.576 3.214 37.720 hybrid contribution -0.403 0.456 0.561 0.827 sum 31.048 -20.120 3.774 37.189 Atomic orbital electron populations 1.70077 1.08329 1.28163 1.52640 1.26051 0.95665 1.03669 0.94154 0.85633 0.79523 0.78081 0.79280 1.19057 1.21140 1.16808 1.21467 0.92017 0.93201 1.50408 0.94806 1.19455 0.93978 0.94186 0.97197 1.21522 0.91965 0.98567 1.02182 1.21557 0.94584 0.81008 1.02694 1.45899 1.06457 1.10628 1.71117 1.20261 0.83597 0.89587 0.78042 1.90729 1.55629 1.46178 1.49810 1.19996 0.84148 0.88732 0.77432 1.90761 1.55819 1.45900 1.48284 1.45681 1.05849 1.09825 1.72243 1.19743 0.98604 0.81007 0.88947 0.88736 1.21880 0.91145 1.00247 1.02098 1.21548 1.01892 0.95020 0.96503 1.20105 0.92639 1.02271 0.92623 1.20527 1.00460 1.09644 0.95241 1.22791 0.88643 0.98970 0.97453 1.46539 1.16551 1.44127 1.12185 0.70677 1.77124 1.23202 1.19627 0.94247 1.22924 0.93462 0.99591 0.96447 0.92516 0.95730 0.95616 0.91741 0.92077 0.91158 0.90614 0.74589 0.74224 0.88638 0.89793 0.88252 0.91919 0.89991 0.89409 0.76628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.27 13.96 21.45 0.30 -59.97 16 2 C 0.00 0.07 5.47 84.65 0.46 0.54 16 3 Si 0.95 44.50 27.47 68.60 1.88 46.38 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 6 H -0.24 -10.57 6.54 99.48 0.65 -9.92 16 7 C -0.53 -30.80 9.66 25.60 0.25 -30.55 16 8 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 9 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 10 C -0.10 -3.93 5.27 30.59 0.16 -3.77 16 11 C 0.12 4.00 5.67 86.38 0.49 4.49 16 12 N -0.69 -20.61 5.55 -464.42 -2.58 -23.19 16 13 C 0.50 15.22 7.89 87.27 0.69 15.91 16 14 O -0.55 -18.05 16.48 -3.24 -0.05 -18.10 16 15 C 0.52 14.39 7.86 87.27 0.69 15.07 16 16 O -0.53 -17.24 16.15 -3.22 -0.05 -17.29 16 17 N -0.68 -14.54 5.08 -446.48 -2.27 -16.80 16 18 C 0.22 4.03 2.82 44.45 0.13 4.15 16 19 H 0.09 1.97 7.59 -2.39 -0.02 1.95 16 20 C -0.12 -1.07 5.35 30.73 0.16 -0.91 16 21 C -0.11 -0.72 5.87 30.74 0.18 -0.54 16 22 C -0.04 -0.26 6.28 30.03 0.19 -0.08 16 23 C -0.25 -3.47 5.89 -20.10 -0.12 -3.59 16 24 C 0.07 0.77 11.95 83.33 1.00 1.76 16 25 N -0.48 -8.10 7.37 -57.88 -0.43 -8.53 16 26 H 0.45 5.08 8.96 -213.19 -1.91 3.17 16 27 N -0.32 -8.18 12.68 -47.13 -0.60 -8.78 16 28 C 0.05 0.94 6.67 43.44 0.29 1.23 16 29 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 30 H 0.02 1.10 7.20 -2.39 -0.02 1.09 16 31 H 0.03 1.13 7.57 -2.39 -0.02 1.11 16 32 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 34 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.42 11.81 7.95 -92.71 -0.74 11.08 16 37 H 0.42 7.69 8.08 -92.70 -0.75 6.94 16 38 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.08 0.68 8.10 -2.38 -0.02 0.66 16 40 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 41 H 0.06 0.51 8.10 -2.39 -0.02 0.49 16 42 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.09 0.35 8.14 -2.38 -0.02 0.33 16 44 H 0.22 0.42 8.06 -2.91 -0.02 0.40 16 Total: -1.00 -80.15 369.21 -1.50 -81.66 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: -2.40 Total: 21.24 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 4.68 Total: 3.39 kcal Atomic # 7 Polarization: -111.70 SS G_CDS: -5.57 Total: -117.27 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.11 Total: -35.39 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.38 kcal Total: -80.15 -1.50 -81.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323192538.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.200 kcal (2) G-P(sol) polarization free energy of solvation -80.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds