Wall clock time and date at job start Tue Mar 31 2020 12:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 119.99737 * 2 1 4 4 H 1.48497 * 109.46911 * 240.00031 * 3 2 1 5 5 H 1.48504 * 109.47404 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47003 * 120.00482 * 3 2 1 7 7 C 1.37872 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99833 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00485 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47508 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47159 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47037 * 179.97438 * 11 10 9 13 13 C 1.34784 * 119.99932 * 180.02562 * 12 11 10 14 14 O 1.21347 * 119.99933 * 359.97438 * 13 12 11 15 15 C 1.49450 * 120.00042 * 179.97438 * 13 12 11 16 16 O 1.21353 * 119.99935 * 359.97438 * 15 13 12 17 17 N 1.34771 * 120.00225 * 179.97438 * 15 13 12 18 18 C 1.46497 * 120.00115 * 180.02562 * 17 15 13 19 19 H 1.09001 * 109.43033 * 35.10624 * 18 17 15 20 20 C 1.53032 * 109.42862 * 154.99915 * 18 17 15 21 21 C 1.53372 * 109.75012 * 191.78462 * 20 18 17 22 22 C 1.50948 * 108.23710 * 309.30177 * 21 20 18 23 23 N 1.30129 * 128.28303 * 196.80610 * 22 21 20 24 24 N 1.40319 * 108.12192 * 179.85113 * 23 22 21 25 25 H 0.96993 * 126.00254 * 180.02562 * 24 23 22 26 26 C 1.35458 * 107.96853 * 0.07430 * 24 23 22 27 27 C 1.34570 * 107.59904 * 359.97438 * 26 24 23 28 28 C 1.50880 * 128.32589 * 179.97438 * 27 26 24 29 29 H 0.96996 * 120.00280 * 359.97438 * 1 2 3 30 30 H 1.09008 * 109.46901 * 59.99667 * 9 7 2 31 31 H 1.09004 * 109.46888 * 300.00247 * 9 7 2 32 32 H 1.08995 * 109.46771 * 59.99742 * 10 9 7 33 33 H 1.08997 * 109.46847 * 299.99992 * 10 9 7 34 34 H 1.09008 * 109.47211 * 59.99630 * 11 10 9 35 35 H 1.08997 * 109.47099 * 299.99672 * 11 10 9 36 36 H 0.96994 * 120.00567 * 359.97438 * 12 11 10 37 37 H 0.97004 * 119.99872 * 359.97438 * 17 15 13 38 38 H 1.08992 * 109.42245 * 71.69731 * 20 18 17 39 39 H 1.08997 * 109.37503 * 311.83562 * 20 18 17 40 40 H 1.09002 * 109.71916 * 69.00243 * 21 20 18 41 41 H 1.09001 * 109.71493 * 189.60357 * 21 20 18 42 42 H 1.07996 * 126.20769 * 180.02562 * 26 24 23 43 43 H 1.08996 * 109.72315 * 76.99017 * 28 27 26 44 44 H 1.09009 * 109.71855 * 316.34032 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4323 -6.1005 -0.0018 13 6 1.9830 -7.3713 -0.0030 14 8 0.7900 -7.5930 -0.0030 15 6 2.9542 -8.5073 -0.0042 16 8 4.1473 -8.2855 -0.0046 17 7 2.5050 -9.7779 -0.0048 18 6 3.4569 -10.8914 -0.0054 19 1 4.3318 -10.6208 0.5858 20 6 2.7936 -12.1286 0.6039 21 6 3.8534 -13.2027 0.8784 22 6 4.6652 -13.3976 -0.3792 23 7 5.4483 -14.3901 -0.6875 24 7 5.9886 -14.1412 -1.9584 25 1 6.6058 -14.7155 -2.4380 26 6 5.4972 -12.9575 -2.3969 27 6 4.6791 -12.4778 -1.4421 28 6 3.8885 -11.1928 -1.4464 29 1 -0.4850 0.8400 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 2.8719 -3.6043 0.8894 33 1 2.8719 -3.6043 -0.8905 34 1 0.8539 -5.0445 -0.8914 35 1 0.8534 -5.0451 0.8886 36 1 3.3859 -5.9234 -0.0021 37 1 1.5512 -9.9552 -0.0041 38 1 2.0512 -12.5210 -0.0909 39 1 2.3056 -11.8536 1.5389 40 1 4.5047 -12.8779 1.6899 41 1 3.3661 -14.1390 1.1504 42 1 5.7207 -12.4847 -3.3417 43 1 3.0078 -11.3048 -2.0786 44 1 4.5102 -10.3797 -1.8215 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323239436.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:23 Heat of formation + Delta-G solvation = -19.546868 kcal Electronic energy + Delta-G solvation = -25435.475186 eV Core-core repulsion = 21581.430118 eV Total energy + Delta-G solvation = -3854.045069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.86179 -40.62640 -38.74674 -37.18247 -35.65854 -33.99557 -33.27959 -32.21654 -31.24185 -30.70490 -28.55439 -27.15596 -25.27130 -24.29625 -22.74967 -21.67892 -21.41434 -20.76520 -20.23129 -19.33964 -18.20385 -18.01946 -17.01240 -16.35204 -16.01764 -15.87585 -15.67977 -15.16814 -14.90911 -14.57373 -14.45182 -14.14848 -13.85049 -13.72942 -13.63358 -13.25188 -13.08384 -12.54959 -12.39930 -12.29998 -11.89292 -11.79455 -11.66995 -11.53036 -11.33160 -10.89301 -10.82132 -10.75574 -10.63255 -9.89782 -9.79077 -9.77550 -9.49879 -9.36305 -9.14195 -8.97421 -8.82312 -8.37573 -6.02515 -4.05603 1.42889 1.49821 2.31960 2.32374 2.45514 3.23457 3.32520 3.37129 3.39308 3.62296 4.02335 4.31748 4.33860 4.43918 4.52633 4.59045 4.73536 4.90479 5.00457 5.12613 5.20574 5.27070 5.33322 5.46152 5.54199 5.59729 5.65952 5.69424 5.74392 5.78284 6.05456 6.08316 6.24763 6.27701 6.54257 6.69771 6.87803 6.93892 6.95375 7.26516 7.42024 7.61509 7.73423 7.73967 7.95672 8.06115 8.36958 9.00638 9.58672 11.08661 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033669 B = 0.001759 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.418753 B =15912.516477 C =16381.475769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.114 3.886 12 N -0.692 5.692 13 C 0.499 3.501 14 O -0.526 6.526 15 C 0.510 3.490 16 O -0.519 6.519 17 N -0.701 5.701 18 C 0.146 3.854 19 H 0.096 0.904 20 C -0.125 4.125 21 C -0.034 4.034 22 C 0.080 3.920 23 N -0.287 5.287 24 N -0.486 5.486 25 H 0.440 0.560 26 C 0.065 3.935 27 C -0.230 4.230 28 C -0.052 4.052 29 H 0.262 0.738 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.411 0.589 37 H 0.413 0.587 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.177 0.823 43 H 0.075 0.925 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.697 -30.123 -2.664 31.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.008 4.008 12 N -0.343 5.343 13 C 0.279 3.721 14 O -0.403 6.403 15 C 0.291 3.709 16 O -0.394 6.394 17 N -0.354 5.354 18 C 0.042 3.958 19 H 0.114 0.886 20 C -0.163 4.163 21 C -0.073 4.073 22 C -0.089 4.089 23 N -0.110 5.110 24 N -0.195 5.195 25 H 0.283 0.717 26 C -0.081 4.081 27 C -0.242 4.242 28 C -0.091 4.091 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.247 0.753 37 H 0.250 0.750 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.195 0.805 43 H 0.094 0.906 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.019 -31.069 -2.292 32.433 hybrid contribution 0.550 1.424 -0.751 1.701 sum 9.569 -29.645 -3.043 31.300 Atomic orbital electron populations 1.69952 1.06041 1.26821 1.50463 1.25023 0.94870 0.99303 0.95237 0.86631 0.79548 0.83036 0.78616 1.20240 1.21280 1.20239 1.21165 0.93019 0.90905 1.51091 0.92626 1.19032 0.93803 0.90775 0.97719 1.21925 0.99877 0.92977 1.01306 1.21841 0.91739 0.84727 1.02530 1.46074 1.12215 1.05020 1.71012 1.20033 0.88482 0.84530 0.79047 1.90760 1.16013 1.84711 1.48857 1.20352 0.88778 0.84450 0.77312 1.90766 1.16221 1.84733 1.47644 1.45821 1.11475 1.04612 1.73471 1.21088 0.92771 0.85097 0.96846 0.88638 1.21848 0.98192 0.94040 1.02236 1.20051 0.95474 0.99652 0.92167 1.22387 0.96982 0.92222 0.97343 1.76999 1.14828 1.23050 0.96079 1.46390 1.39829 1.18400 1.14843 0.71656 1.22139 0.97234 0.88511 1.00183 1.19970 1.07422 1.00620 0.96178 1.20373 0.98849 0.93358 0.96550 0.92870 0.96190 0.96190 0.92422 0.92444 0.91099 0.91084 0.75318 0.75020 0.90446 0.89732 0.89279 0.89209 0.80548 0.90628 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.49 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.11 1.91 5.67 -4.05 -0.02 1.89 16 12 N -0.69 -10.07 5.55 -60.73 -0.34 -10.41 16 13 C 0.50 7.14 7.89 -11.58 -0.09 7.05 16 14 O -0.53 -8.58 16.48 5.50 0.09 -8.49 16 15 C 0.51 6.27 7.85 -11.59 -0.09 6.18 16 16 O -0.52 -7.35 16.14 5.49 0.09 -7.26 16 17 N -0.70 -6.38 5.07 -54.02 -0.27 -6.66 16 18 C 0.15 1.15 2.40 -67.70 -0.16 0.98 16 19 H 0.10 0.90 7.54 -51.93 -0.39 0.51 16 20 C -0.12 -0.69 5.33 -26.52 -0.14 -0.83 16 21 C -0.03 -0.21 6.31 -27.57 -0.17 -0.38 16 22 C 0.08 0.69 7.10 -82.31 -0.58 0.10 16 23 N -0.29 -2.74 12.68 33.77 0.43 -2.32 16 24 N -0.49 -3.31 7.38 30.40 0.22 -3.08 16 25 H 0.44 1.58 8.96 -182.44 -1.64 -0.06 16 26 C 0.06 0.43 11.96 -17.25 -0.21 0.22 16 27 C -0.23 -1.86 5.89 -104.95 -0.62 -2.48 16 28 C -0.05 -0.41 5.85 -27.58 -0.16 -0.57 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.41 5.47 7.94 -40.82 -0.32 5.14 16 37 H 0.41 3.28 8.07 -40.82 -0.33 2.95 16 38 H 0.08 0.39 8.10 -51.93 -0.42 -0.03 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 LS Contribution 372.80 15.07 5.62 5.62 Total: -1.00 -34.31 372.80 -9.10 -43.42 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.72 Total: 1.74 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -2.94 Total: -3.15 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.78 Total: -48.25 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: 0.18 Total: -15.75 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.31 -9.10 -43.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323239436.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.870 kcal (2) G-P(sol) polarization free energy of solvation -34.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds