Wall clock time and date at job start Tue Mar 31 2020 12:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 119.99737 * 2 1 4 4 H 1.48497 * 109.46911 * 240.00031 * 3 2 1 5 5 H 1.48504 * 109.47404 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47003 * 120.00482 * 3 2 1 7 7 C 1.37872 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99833 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00485 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47508 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47159 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47037 * 179.97438 * 11 10 9 13 13 C 1.34784 * 119.99932 * 180.02562 * 12 11 10 14 14 O 1.21347 * 119.99933 * 359.97438 * 13 12 11 15 15 C 1.49450 * 120.00042 * 179.97438 * 13 12 11 16 16 O 1.21353 * 119.99935 * 359.97438 * 15 13 12 17 17 N 1.34771 * 120.00225 * 179.97438 * 15 13 12 18 18 C 1.46497 * 120.00115 * 180.02562 * 17 15 13 19 19 H 1.09001 * 109.43033 * 35.10624 * 18 17 15 20 20 C 1.53032 * 109.42862 * 154.99915 * 18 17 15 21 21 C 1.53372 * 109.75012 * 191.78462 * 20 18 17 22 22 C 1.50948 * 108.23710 * 309.30177 * 21 20 18 23 23 N 1.30129 * 128.28303 * 196.80610 * 22 21 20 24 24 N 1.40319 * 108.12192 * 179.85113 * 23 22 21 25 25 H 0.96993 * 126.00254 * 180.02562 * 24 23 22 26 26 C 1.35458 * 107.96853 * 0.07430 * 24 23 22 27 27 C 1.34570 * 107.59904 * 359.97438 * 26 24 23 28 28 C 1.50880 * 128.32589 * 179.97438 * 27 26 24 29 29 H 0.96996 * 120.00280 * 359.97438 * 1 2 3 30 30 H 1.09008 * 109.46901 * 59.99667 * 9 7 2 31 31 H 1.09004 * 109.46888 * 300.00247 * 9 7 2 32 32 H 1.08995 * 109.46771 * 59.99742 * 10 9 7 33 33 H 1.08997 * 109.46847 * 299.99992 * 10 9 7 34 34 H 1.09008 * 109.47211 * 59.99630 * 11 10 9 35 35 H 1.08997 * 109.47099 * 299.99672 * 11 10 9 36 36 H 0.96994 * 120.00567 * 359.97438 * 12 11 10 37 37 H 0.97004 * 119.99872 * 359.97438 * 17 15 13 38 38 H 1.08992 * 109.42245 * 71.69731 * 20 18 17 39 39 H 1.08997 * 109.37503 * 311.83562 * 20 18 17 40 40 H 1.09002 * 109.71916 * 69.00243 * 21 20 18 41 41 H 1.09001 * 109.71493 * 189.60357 * 21 20 18 42 42 H 1.07996 * 126.20769 * 180.02562 * 26 24 23 43 43 H 1.08996 * 109.72315 * 76.99017 * 28 27 26 44 44 H 1.09009 * 109.71855 * 316.34032 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4323 -6.1005 -0.0018 13 6 1.9830 -7.3713 -0.0030 14 8 0.7900 -7.5930 -0.0030 15 6 2.9542 -8.5073 -0.0042 16 8 4.1473 -8.2855 -0.0046 17 7 2.5050 -9.7779 -0.0048 18 6 3.4569 -10.8914 -0.0054 19 1 4.3318 -10.6208 0.5858 20 6 2.7936 -12.1286 0.6039 21 6 3.8534 -13.2027 0.8784 22 6 4.6652 -13.3976 -0.3792 23 7 5.4483 -14.3901 -0.6875 24 7 5.9886 -14.1412 -1.9584 25 1 6.6058 -14.7155 -2.4380 26 6 5.4972 -12.9575 -2.3969 27 6 4.6791 -12.4778 -1.4421 28 6 3.8885 -11.1928 -1.4464 29 1 -0.4850 0.8400 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 2.8719 -3.6043 0.8894 33 1 2.8719 -3.6043 -0.8905 34 1 0.8539 -5.0445 -0.8914 35 1 0.8534 -5.0451 0.8886 36 1 3.3859 -5.9234 -0.0021 37 1 1.5512 -9.9552 -0.0041 38 1 2.0512 -12.5210 -0.0909 39 1 2.3056 -11.8536 1.5389 40 1 4.5047 -12.8779 1.6899 41 1 3.3661 -14.1390 1.1504 42 1 5.7207 -12.4847 -3.3417 43 1 3.0078 -11.3048 -2.0786 44 1 4.5102 -10.3797 -1.8215 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323239436.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:22 Heat of formation + Delta-G solvation = -44.948735 kcal Electronic energy + Delta-G solvation = -25436.576694 eV Core-core repulsion = 21581.430118 eV Total energy + Delta-G solvation = -3855.146576 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.42983 -41.65719 -39.79771 -37.94170 -37.08741 -35.30162 -34.59503 -33.01384 -32.81994 -31.26121 -29.34566 -28.71962 -26.33165 -25.30742 -24.09852 -22.44780 -22.33127 -21.96166 -21.30617 -20.09992 -19.18379 -18.56073 -18.47925 -17.94491 -17.11703 -16.84727 -16.50349 -16.28008 -16.19817 -16.02495 -15.42183 -15.07308 -14.77671 -14.61929 -14.33550 -14.24294 -13.91169 -13.76847 -13.70867 -13.48017 -13.07141 -12.97724 -12.77055 -12.71586 -12.52263 -12.41782 -12.07906 -11.88411 -11.67144 -11.53828 -11.41019 -11.22944 -10.65282 -10.52494 -10.35649 -10.31302 -10.22931 -9.38277 -8.17697 -6.28548 0.35753 0.96029 1.31535 1.43338 1.45693 1.53605 1.74858 2.00221 2.15709 2.43015 2.64325 3.16048 3.39893 3.54102 3.77309 3.87981 4.03546 4.11510 4.21252 4.24623 4.38344 4.46558 4.55446 4.59356 4.71542 4.75818 4.90093 4.92697 4.94403 5.02667 5.10151 5.17416 5.18017 5.24263 5.26327 5.34187 5.53401 5.69116 5.73096 5.86324 5.95554 6.24939 6.38917 6.46428 6.72151 6.76302 6.88206 6.96434 7.40639 8.93830 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033669 B = 0.001759 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.418753 B =15912.516477 C =16381.475769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.024 3.976 10 C -0.106 4.106 11 C 0.127 3.873 12 N -0.687 5.687 13 C 0.501 3.499 14 O -0.547 6.547 15 C 0.517 3.483 16 O -0.539 6.539 17 N -0.682 5.682 18 C 0.146 3.854 19 H 0.081 0.919 20 C -0.115 4.115 21 C -0.033 4.033 22 C 0.069 3.931 23 N -0.323 5.323 24 N -0.481 5.481 25 H 0.451 0.549 26 C 0.073 3.927 27 C -0.254 4.254 28 C -0.044 4.044 29 H 0.263 0.737 30 H -0.003 1.003 31 H -0.004 1.004 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.419 0.581 37 H 0.421 0.579 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.208 0.792 43 H 0.082 0.918 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.868 -30.890 -2.959 32.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.013 4.013 10 C -0.144 4.144 11 C 0.004 3.996 12 N -0.340 5.340 13 C 0.282 3.718 14 O -0.425 6.425 15 C 0.297 3.703 16 O -0.416 6.416 17 N -0.335 5.335 18 C 0.043 3.957 19 H 0.099 0.901 20 C -0.154 4.154 21 C -0.073 4.073 22 C -0.099 4.099 23 N -0.146 5.146 24 N -0.191 5.191 25 H 0.298 0.702 26 C -0.073 4.073 27 C -0.266 4.266 28 C -0.084 4.084 29 H 0.072 0.928 30 H 0.015 0.985 31 H 0.015 0.985 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.256 0.744 37 H 0.259 0.741 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.110 0.890 41 H 0.119 0.881 42 H 0.225 0.775 43 H 0.101 0.899 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.211 -31.891 -2.589 33.586 hybrid contribution 0.185 1.585 -0.694 1.740 sum 10.396 -30.306 -3.283 32.208 Atomic orbital electron populations 1.70090 1.07762 1.27806 1.51574 1.25972 0.95759 1.03357 0.94824 0.85507 0.78227 0.78178 0.79157 1.19183 1.21083 1.19218 1.21656 0.93706 0.92165 1.50595 0.91794 1.18939 0.94370 0.92576 0.95451 1.21637 0.98621 0.91962 1.02186 1.21463 0.91589 0.84522 1.01993 1.45888 1.12220 1.04730 1.71138 1.20374 0.88555 0.84785 0.78099 1.90751 1.17031 1.85035 1.49693 1.19917 0.87883 0.84754 0.77706 1.90767 1.16676 1.84977 1.49174 1.45791 1.12237 1.03834 1.71602 1.21191 0.92186 0.85282 0.97080 0.90107 1.21803 0.98019 0.92614 1.02934 1.20138 0.95455 1.00295 0.91409 1.22786 0.96896 0.92059 0.98183 1.76935 1.16012 1.24117 0.97568 1.46450 1.39698 1.18707 1.14252 0.70226 1.22652 0.95898 0.87982 1.00815 1.20125 1.08693 1.00908 0.96880 1.20262 0.98868 0.92905 0.96337 0.92820 0.98491 0.98512 0.91504 0.91485 0.91714 0.91729 0.74383 0.74078 0.89493 0.88365 0.88986 0.88057 0.77546 0.89931 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 3 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.54 -30.10 9.11 25.60 0.23 -29.87 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.02 1.24 4.97 29.85 0.15 1.39 16 10 C -0.11 -4.02 5.27 30.59 0.16 -3.86 16 11 C 0.13 4.25 5.67 86.38 0.49 4.74 16 12 N -0.69 -19.39 5.55 -464.41 -2.58 -21.97 16 13 C 0.50 13.87 7.89 87.27 0.69 14.56 16 14 O -0.55 -17.39 16.48 -3.24 -0.05 -17.44 16 15 C 0.52 12.13 7.85 87.27 0.69 12.82 16 16 O -0.54 -14.77 16.14 -3.26 -0.05 -14.82 16 17 N -0.68 -11.43 5.07 -443.17 -2.25 -13.68 16 18 C 0.15 2.10 2.40 45.14 0.11 2.21 16 19 H 0.08 1.46 7.54 -2.39 -0.02 1.44 16 20 C -0.12 -1.06 5.33 30.73 0.16 -0.90 16 21 C -0.03 -0.36 6.31 30.05 0.19 -0.17 16 22 C 0.07 1.12 7.10 43.46 0.31 1.43 16 23 N -0.32 -5.93 12.68 -47.08 -0.60 -6.52 16 24 N -0.48 -5.95 7.38 -57.73 -0.43 -6.38 16 25 H 0.45 2.68 8.96 -213.19 -1.91 0.77 16 26 C 0.07 0.83 11.96 83.29 1.00 1.83 16 27 C -0.25 -3.81 5.89 -20.08 -0.12 -3.93 16 28 C -0.04 -0.64 5.85 30.04 0.18 -0.47 16 29 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 30 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 31 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 32 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 35 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.42 10.61 7.94 -92.71 -0.74 9.88 16 37 H 0.42 5.93 8.07 -92.71 -0.75 5.18 16 38 H 0.09 0.67 8.10 -2.39 -0.02 0.65 16 39 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.21 0.89 8.06 -2.91 -0.02 0.86 16 43 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -73.65 372.80 -1.29 -74.95 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -2.34 Total: 15.91 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 4.69 Total: 0.17 kcal Atomic # 7 Polarization: -98.87 SS G_CDS: -5.56 Total: -104.44 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.11 Total: -32.27 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -73.65 -1.29 -74.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323239436.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.997 kcal (2) G-P(sol) polarization free energy of solvation -73.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds