Wall clock time and date at job start Tue Mar 31 2020 12:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99757 * 2 1 4 4 H 1.48508 * 109.46698 * 270.00148 * 3 2 1 5 5 H 1.48499 * 109.47191 * 29.99977 * 3 2 1 6 6 H 1.48497 * 109.47101 * 150.00502 * 3 2 1 7 7 C 1.37879 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00233 * 169.99364 * 7 2 1 9 9 C 1.50704 * 119.99773 * 349.98771 * 7 2 1 10 10 C 1.52996 * 115.54961 * 325.15661 * 9 7 2 11 11 N 1.46502 * 109.47289 * 306.40952 * 10 9 7 12 12 C 1.34778 * 120.00026 * 183.79908 * 11 10 9 13 13 O 1.21344 * 120.00161 * 354.28497 * 12 11 10 14 14 C 1.49450 * 119.99840 * 174.28731 * 12 11 10 15 15 O 1.21347 * 120.00074 * 4.97552 * 14 12 11 16 16 N 1.34777 * 119.99896 * 184.97173 * 14 12 11 17 17 C 1.46503 * 119.99979 * 179.97438 * 16 14 12 18 18 C 1.52996 * 109.46913 * 180.02562 * 17 16 14 19 19 C 1.53002 * 109.47036 * 180.02562 * 18 17 16 20 20 N 1.46496 * 109.47098 * 179.97438 * 19 18 17 21 21 C 1.34950 * 126.03442 * 125.00248 * 20 19 18 22 22 C 1.35323 * 107.74402 * 179.97438 * 21 20 19 23 23 C 1.39871 * 107.92029 * 0.02562 * 22 21 20 24 24 N 1.30837 * 108.20009 * 359.73754 * 23 22 21 25 25 C 1.53004 * 117.49526 * 110.82631 * 9 7 2 26 26 C 1.52995 * 117.49528 * 179.48197 * 9 7 2 27 27 H 0.97002 * 120.00422 * 5.03257 * 1 2 3 28 28 H 1.09008 * 109.46911 * 186.41574 * 10 9 7 29 29 H 1.08993 * 109.47331 * 66.41523 * 10 9 7 30 30 H 0.96998 * 119.99952 * 4.07656 * 11 10 9 31 31 H 0.96994 * 120.00015 * 359.97438 * 16 14 12 32 32 H 1.08997 * 109.47039 * 300.00130 * 17 16 14 33 33 H 1.09005 * 109.46980 * 60.00046 * 17 16 14 34 34 H 1.09004 * 109.47202 * 299.99535 * 18 17 16 35 35 H 1.08996 * 109.47460 * 60.00016 * 18 17 16 36 36 H 1.08997 * 109.46935 * 300.00096 * 19 18 17 37 37 H 1.09005 * 109.46961 * 59.99937 * 19 18 17 38 38 H 1.07996 * 126.12836 * 359.97438 * 21 20 19 39 39 H 1.07993 * 126.03856 * 179.97438 * 22 21 20 40 40 H 1.07998 * 125.90044 * 179.97438 * 23 22 21 41 41 H 1.08998 * 117.49480 * 215.00317 * 25 9 7 42 42 H 1.08994 * 117.49647 * 0.02562 * 25 9 7 43 43 H 1.08997 * 117.50195 * 359.97438 * 26 9 7 44 44 H 1.09009 * 117.49602 * 144.97162 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0722 -1.2011 -0.1630 9 6 1.2683 -2.4893 0.2258 10 6 0.0910 -2.4176 1.2003 11 7 0.5408 -1.8363 2.4676 12 6 -0.3119 -1.7450 3.5074 13 8 -1.4783 -2.0473 3.3639 14 6 0.1792 -1.2713 4.8371 15 8 1.3225 -0.8835 4.9586 16 7 -0.6479 -1.2749 5.9012 17 6 -0.1664 -0.8112 7.2048 18 6 -1.2945 -0.9184 8.2327 19 6 -0.7918 -0.4335 9.5940 20 7 -1.8722 -0.5356 10.5782 21 6 -1.8156 -1.1964 11.7534 22 6 -3.0128 -1.0499 12.3670 23 6 -3.8291 -0.2734 11.5381 24 7 -3.1446 0.0399 10.4679 25 6 1.1469 -3.4493 -0.9594 26 6 2.0877 -3.7812 0.2015 27 1 -0.4851 0.8368 -0.0737 28 1 -0.2954 -3.4213 1.3778 29 1 -0.6960 -1.7954 0.7742 30 1 1.4511 -1.5135 2.5571 31 1 -1.5620 -1.5846 5.8039 32 1 0.6739 -1.4285 7.5223 33 1 0.1553 0.2272 7.1248 34 1 -2.1351 -0.3013 7.9154 35 1 -1.6159 -1.9569 8.3126 36 1 0.0489 -1.0502 9.9116 37 1 -0.4708 0.6051 9.5139 38 1 -0.9670 -1.7441 12.1358 39 1 -3.2894 -1.4606 13.3267 40 1 -4.8471 0.0204 11.7471 41 1 0.2282 -4.0297 -1.0449 42 1 1.5999 -3.1441 -1.9026 43 1 3.1591 -3.6943 0.0215 44 1 1.7882 -4.5799 0.8803 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324159935.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:12 Heat of formation + Delta-G solvation = 32.090747 kcal Electronic energy + Delta-G solvation = -25794.571396 eV Core-core repulsion = 21942.765503 eV Total energy + Delta-G solvation = -3851.805894 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.41340 -40.10663 -38.13586 -36.69881 -36.29416 -34.09698 -33.05354 -32.20537 -30.98609 -30.09028 -27.12964 -26.07455 -25.44863 -23.31452 -22.10859 -21.35158 -21.25050 -20.89948 -19.68925 -19.37612 -18.00660 -17.61704 -16.40897 -16.32820 -16.17284 -15.47786 -15.17011 -14.91579 -14.72435 -14.56161 -14.41958 -14.02730 -13.70111 -13.59956 -13.14020 -13.02862 -12.70754 -12.65046 -12.53379 -12.07224 -11.82522 -11.56042 -11.45008 -11.17595 -11.03871 -10.90479 -10.81692 -10.53492 -10.30312 -9.75960 -9.66529 -9.21668 -9.20892 -9.02748 -8.91382 -8.87611 -8.35482 -8.01560 -6.10976 -4.20974 1.58415 1.93832 2.13818 2.55819 2.80253 3.22699 3.32203 3.35264 3.77935 4.03436 4.19268 4.29452 4.41699 4.52529 4.62746 4.71778 4.84004 4.88298 5.00793 5.19385 5.22915 5.33725 5.44195 5.46105 5.63228 5.69467 5.75137 5.94570 6.23378 6.26206 6.33932 6.48062 6.52612 6.63150 6.67400 6.81971 6.99058 7.17406 7.23888 7.37731 7.39810 7.48931 7.86219 7.97343 8.26038 8.34294 8.76305 8.79754 9.40639 10.86001 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020589 B = 0.002259 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.600729 B =12389.282505 C =12971.163357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.074 3.926 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.499 4.499 8 H 0.064 0.936 9 C 0.034 3.966 10 C 0.158 3.842 11 N -0.649 5.649 12 C 0.493 3.507 13 O -0.545 6.545 14 C 0.509 3.491 15 O -0.520 6.520 16 N -0.709 5.709 17 C 0.122 3.878 18 C -0.145 4.145 19 C 0.138 3.862 20 N -0.372 5.372 21 C 0.053 3.947 22 C -0.277 4.277 23 C 0.042 3.958 24 N -0.293 5.293 25 C -0.193 4.193 26 C -0.211 4.211 27 H 0.264 0.736 28 H 0.033 0.967 29 H 0.117 0.883 30 H 0.413 0.587 31 H 0.413 0.587 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.173 0.827 39 H 0.146 0.854 40 H 0.182 0.818 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.246 -2.765 21.674 22.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.130 4.130 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.536 4.536 8 H 0.082 0.918 9 C 0.034 3.966 10 C 0.035 3.965 11 N -0.298 5.298 12 C 0.272 3.728 13 O -0.425 6.425 14 C 0.291 3.709 15 O -0.395 6.395 16 N -0.364 5.364 17 C -0.002 4.002 18 C -0.183 4.183 19 C 0.016 3.984 20 N -0.154 5.154 21 C -0.093 4.093 22 C -0.307 4.307 23 C -0.144 4.144 24 N -0.114 5.114 25 C -0.232 4.232 26 C -0.248 4.248 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.134 0.866 30 H 0.250 0.750 31 H 0.249 0.751 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.191 0.809 39 H 0.164 0.836 40 H 0.199 0.801 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.255 -1.948 20.475 20.824 hybrid contribution 0.468 0.394 0.736 0.957 sum -2.787 -1.555 21.211 21.450 Atomic orbital electron populations 1.69816 1.05920 1.27123 1.47732 1.24991 0.94826 0.99226 0.93994 0.86575 0.80154 0.83128 0.78246 1.20567 1.21015 1.19479 1.20489 0.93974 0.88720 1.50404 0.91821 1.19178 0.94046 0.89336 0.94075 1.21215 0.98822 0.95462 0.80953 1.45706 1.15426 1.57320 1.11323 1.19742 0.86560 0.81246 0.85277 1.90691 1.16573 1.50829 1.84403 1.20640 0.85572 0.78767 0.85958 1.90742 1.18161 1.45470 1.85142 1.45663 1.16458 1.65964 1.08336 1.21243 0.96271 1.00973 0.81753 1.22055 0.99574 1.03525 0.93180 1.21611 0.86229 1.03696 0.86889 1.48747 1.11346 1.39846 1.15499 1.22613 1.00387 0.98526 0.87797 1.21534 0.94444 1.10637 1.04068 1.23929 1.00339 0.98073 0.92032 1.77391 0.90642 1.20326 1.23082 1.22927 0.99563 1.06428 0.94285 1.22976 0.97073 1.01797 1.02982 0.92525 0.94910 0.86588 0.75018 0.75097 0.90846 0.90704 0.89318 0.90369 0.88083 0.89147 0.80949 0.83597 0.80079 0.91421 0.90055 0.90446 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.30 10.72 55.43 0.59 -22.71 16 2 C 0.07 1.92 5.13 -17.82 -0.09 1.83 16 3 Si 0.89 20.52 29.55 -169.99 -5.02 15.50 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.50 -12.74 8.27 -34.44 -0.28 -13.03 16 8 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 9 C 0.03 0.81 2.00 -155.66 -0.31 0.50 16 10 C 0.16 3.67 4.73 -4.04 -0.02 3.65 16 11 N -0.65 -14.25 5.27 -60.73 -0.32 -14.57 16 12 C 0.49 10.15 7.88 -11.58 -0.09 10.06 16 13 O -0.55 -12.03 16.50 5.50 0.09 -11.94 16 14 C 0.51 9.01 7.89 -11.58 -0.09 8.92 16 15 O -0.52 -10.17 16.49 5.50 0.09 -10.08 16 16 N -0.71 -9.49 5.55 -60.73 -0.34 -9.83 16 17 C 0.12 1.20 5.67 -4.04 -0.02 1.18 16 18 C -0.14 -1.15 5.52 -26.73 -0.15 -1.30 16 19 C 0.14 0.91 6.51 -4.04 -0.03 0.88 16 20 N -0.37 -3.28 3.68 -61.36 -0.23 -3.51 16 21 C 0.05 0.38 11.45 -17.22 -0.20 0.18 16 22 C -0.28 -2.08 10.80 -40.01 -0.43 -2.51 16 23 C 0.04 0.37 12.03 -17.36 -0.21 0.16 16 24 N -0.29 -3.22 12.42 30.62 0.38 -2.84 16 25 C -0.19 -4.18 9.96 -26.69 -0.27 -4.44 16 26 C -0.21 -4.35 9.92 -26.70 -0.26 -4.62 16 27 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 28 H 0.03 0.73 8.08 -51.92 -0.42 0.31 16 29 H 0.12 3.05 6.03 -51.93 -0.31 2.73 16 30 H 0.41 9.21 7.40 -40.82 -0.30 8.91 16 31 H 0.41 5.17 7.95 -40.82 -0.32 4.85 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 0.40 8.07 -51.93 -0.42 -0.02 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 42 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 43 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 44 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 LS Contribution 380.40 15.07 5.73 5.73 Total: -1.00 -31.48 380.40 -7.87 -39.35 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -6.40 Total: 13.43 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -2.46 Total: 1.46 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: 0.09 Total: -53.45 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: 0.18 Total: -22.02 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.48 -7.87 -39.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324159935.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.442 kcal (2) G-P(sol) polarization free energy of solvation -31.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds