Wall clock time and date at job start Tue Mar 31 2020 12:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99757 * 2 1 4 4 H 1.48508 * 109.46698 * 270.00148 * 3 2 1 5 5 H 1.48499 * 109.47191 * 29.99977 * 3 2 1 6 6 H 1.48497 * 109.47101 * 150.00502 * 3 2 1 7 7 C 1.37879 * 120.00215 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00233 * 169.99364 * 7 2 1 9 9 C 1.50704 * 119.99773 * 349.98771 * 7 2 1 10 10 C 1.52996 * 115.54961 * 325.15661 * 9 7 2 11 11 N 1.46502 * 109.47289 * 306.40952 * 10 9 7 12 12 C 1.34778 * 120.00026 * 183.79908 * 11 10 9 13 13 O 1.21344 * 120.00161 * 354.28497 * 12 11 10 14 14 C 1.49450 * 119.99840 * 174.28731 * 12 11 10 15 15 O 1.21347 * 120.00074 * 4.97552 * 14 12 11 16 16 N 1.34777 * 119.99896 * 184.97173 * 14 12 11 17 17 C 1.46503 * 119.99979 * 179.97438 * 16 14 12 18 18 C 1.52996 * 109.46913 * 180.02562 * 17 16 14 19 19 C 1.53002 * 109.47036 * 180.02562 * 18 17 16 20 20 N 1.46496 * 109.47098 * 179.97438 * 19 18 17 21 21 C 1.34950 * 126.03442 * 125.00248 * 20 19 18 22 22 C 1.35323 * 107.74402 * 179.97438 * 21 20 19 23 23 C 1.39871 * 107.92029 * 0.02562 * 22 21 20 24 24 N 1.30837 * 108.20009 * 359.73754 * 23 22 21 25 25 C 1.53004 * 117.49526 * 110.82631 * 9 7 2 26 26 C 1.52995 * 117.49528 * 179.48197 * 9 7 2 27 27 H 0.97002 * 120.00422 * 5.03257 * 1 2 3 28 28 H 1.09008 * 109.46911 * 186.41574 * 10 9 7 29 29 H 1.08993 * 109.47331 * 66.41523 * 10 9 7 30 30 H 0.96998 * 119.99952 * 4.07656 * 11 10 9 31 31 H 0.96994 * 120.00015 * 359.97438 * 16 14 12 32 32 H 1.08997 * 109.47039 * 300.00130 * 17 16 14 33 33 H 1.09005 * 109.46980 * 60.00046 * 17 16 14 34 34 H 1.09004 * 109.47202 * 299.99535 * 18 17 16 35 35 H 1.08996 * 109.47460 * 60.00016 * 18 17 16 36 36 H 1.08997 * 109.46935 * 300.00096 * 19 18 17 37 37 H 1.09005 * 109.46961 * 59.99937 * 19 18 17 38 38 H 1.07996 * 126.12836 * 359.97438 * 21 20 19 39 39 H 1.07993 * 126.03856 * 179.97438 * 22 21 20 40 40 H 1.07998 * 125.90044 * 179.97438 * 23 22 21 41 41 H 1.08998 * 117.49480 * 215.00317 * 25 9 7 42 42 H 1.08994 * 117.49647 * 0.02562 * 25 9 7 43 43 H 1.08997 * 117.50195 * 359.97438 * 26 9 7 44 44 H 1.09009 * 117.49602 * 144.97162 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0722 -1.2011 -0.1630 9 6 1.2683 -2.4893 0.2258 10 6 0.0910 -2.4176 1.2003 11 7 0.5408 -1.8363 2.4676 12 6 -0.3119 -1.7450 3.5074 13 8 -1.4783 -2.0473 3.3639 14 6 0.1792 -1.2713 4.8371 15 8 1.3225 -0.8835 4.9586 16 7 -0.6479 -1.2749 5.9012 17 6 -0.1664 -0.8112 7.2048 18 6 -1.2945 -0.9184 8.2327 19 6 -0.7918 -0.4335 9.5940 20 7 -1.8722 -0.5356 10.5782 21 6 -1.8156 -1.1964 11.7534 22 6 -3.0128 -1.0499 12.3670 23 6 -3.8291 -0.2734 11.5381 24 7 -3.1446 0.0399 10.4679 25 6 1.1469 -3.4493 -0.9594 26 6 2.0877 -3.7812 0.2015 27 1 -0.4851 0.8368 -0.0737 28 1 -0.2954 -3.4213 1.3778 29 1 -0.6960 -1.7954 0.7742 30 1 1.4511 -1.5135 2.5571 31 1 -1.5620 -1.5846 5.8039 32 1 0.6739 -1.4285 7.5223 33 1 0.1553 0.2272 7.1248 34 1 -2.1351 -0.3013 7.9154 35 1 -1.6159 -1.9569 8.3126 36 1 0.0489 -1.0502 9.9116 37 1 -0.4708 0.6051 9.5139 38 1 -0.9670 -1.7441 12.1358 39 1 -3.2894 -1.4606 13.3267 40 1 -4.8471 0.0204 11.7471 41 1 0.2282 -4.0297 -1.0449 42 1 1.5999 -3.1441 -1.9026 43 1 3.1591 -3.6943 0.0215 44 1 1.7882 -4.5799 0.8803 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324159935.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:11 Heat of formation + Delta-G solvation = 10.509482 kcal Electronic energy + Delta-G solvation = -25795.507230 eV Core-core repulsion = 21942.765503 eV Total energy + Delta-G solvation = -3852.741728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.98499 -41.57705 -39.68888 -38.44789 -37.24719 -35.19325 -34.53410 -34.14424 -31.74249 -30.72472 -28.63891 -27.58961 -26.90015 -24.49320 -23.09022 -22.91161 -21.89920 -21.62599 -21.24763 -20.97608 -19.54847 -18.32326 -18.00079 -17.71763 -17.25249 -16.77156 -16.47641 -16.43868 -16.10786 -15.74421 -15.43377 -15.26541 -14.89022 -14.71705 -14.42615 -14.31492 -13.70715 -13.61699 -13.51124 -13.41101 -13.18381 -12.92148 -12.82208 -12.69095 -12.68301 -12.32364 -12.13480 -12.05420 -11.50485 -11.44279 -11.11272 -10.72545 -10.59850 -10.36913 -10.34377 -10.18686 -9.81744 -9.48654 -8.06393 -6.21006 0.42823 1.01402 1.37976 1.39756 1.44583 1.51661 1.70827 1.99038 2.22751 2.38829 2.75623 3.03896 3.52618 3.56236 3.68783 3.79563 3.92979 4.10220 4.13498 4.21820 4.33653 4.39883 4.49389 4.55395 4.70028 4.71474 4.75124 4.91208 4.96543 4.97134 5.03445 5.06789 5.15780 5.19221 5.26901 5.48288 5.55785 5.59159 5.77890 5.89424 6.00459 6.19101 6.34229 6.51074 6.77051 6.80792 6.84784 7.11030 7.41891 8.88005 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020589 B = 0.002259 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.600729 B =12389.282505 C =12971.163357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.037 3.963 3 Si 0.941 3.059 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.266 1.266 7 C -0.505 4.505 8 H 0.058 0.942 9 C 0.002 3.998 10 C 0.169 3.831 11 N -0.654 5.654 12 C 0.488 3.512 13 O -0.564 6.564 14 C 0.514 3.486 15 O -0.541 6.541 16 N -0.691 5.691 17 C 0.121 3.879 18 C -0.130 4.130 19 C 0.135 3.865 20 N -0.381 5.381 21 C 0.055 3.945 22 C -0.290 4.290 23 C 0.031 3.969 24 N -0.343 5.343 25 C -0.191 4.191 26 C -0.186 4.186 27 H 0.260 0.740 28 H 0.040 0.960 29 H 0.083 0.917 30 H 0.411 0.589 31 H 0.418 0.582 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.135 0.865 37 H 0.092 0.908 38 H 0.209 0.791 39 H 0.166 0.834 40 H 0.198 0.802 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.200 -3.616 23.573 23.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.190 1.190 7 C -0.543 4.543 8 H 0.077 0.923 9 C 0.001 3.999 10 C 0.046 3.954 11 N -0.302 5.302 12 C 0.269 3.731 13 O -0.445 6.445 14 C 0.295 3.705 15 O -0.419 6.419 16 N -0.345 5.345 17 C -0.002 4.002 18 C -0.168 4.168 19 C 0.014 3.986 20 N -0.164 5.164 21 C -0.091 4.091 22 C -0.319 4.319 23 C -0.154 4.154 24 N -0.165 5.165 25 C -0.230 4.230 26 C -0.223 4.223 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.247 0.753 31 H 0.255 0.745 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.153 0.847 37 H 0.110 0.890 38 H 0.226 0.774 39 H 0.183 0.817 40 H 0.215 0.785 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.226 -2.806 22.403 22.687 hybrid contribution 0.104 0.606 0.198 0.646 sum -2.122 -2.200 22.601 22.807 Atomic orbital electron populations 1.69963 1.06855 1.27137 1.49052 1.25533 0.95340 1.01548 0.94117 0.85800 0.79144 0.80173 0.78141 1.20224 1.21683 1.19037 1.20687 0.93819 0.89889 1.49855 0.92341 1.19256 0.95213 0.89836 0.95611 1.20914 0.97948 0.95060 0.81478 1.45678 1.15451 1.57699 1.11405 1.20306 0.86125 0.80436 0.86268 1.90670 1.17296 1.51500 1.85021 1.20050 0.85665 0.79195 0.85628 1.90735 1.18904 1.46969 1.85242 1.45690 1.16055 1.64124 1.08591 1.21479 0.97418 1.01139 0.80142 1.21877 0.98122 1.03312 0.93510 1.21767 0.86512 1.04559 0.85786 1.48913 1.11063 1.40019 1.16386 1.23259 1.01330 0.97580 0.86921 1.21892 0.94548 1.10638 1.04867 1.24383 1.01258 0.97929 0.91851 1.77324 0.92202 1.22321 1.24646 1.22934 1.00492 1.05658 0.93898 1.22978 0.97075 1.00169 1.02078 0.93078 0.94173 0.89889 0.75304 0.74547 0.89170 0.90699 0.91197 0.90151 0.84720 0.88998 0.77421 0.81670 0.78492 0.90166 0.90509 0.89844 0.89385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.69 10.72 21.45 0.23 -48.46 16 2 C 0.04 1.90 5.13 84.65 0.43 2.33 16 3 Si 0.94 42.28 29.55 68.60 2.03 44.31 16 4 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.51 -25.77 8.27 25.60 0.21 -25.55 16 8 H 0.06 2.97 7.83 -2.91 -0.02 2.95 16 9 C 0.00 0.07 2.00 -52.93 -0.11 -0.04 16 10 C 0.17 7.90 4.73 86.38 0.41 8.31 16 11 N -0.65 -28.87 5.27 -464.42 -2.45 -31.32 16 12 C 0.49 20.15 7.88 87.27 0.69 20.84 16 13 O -0.56 -25.05 16.50 -3.23 -0.05 -25.10 16 14 C 0.51 17.85 7.89 87.27 0.69 18.54 16 15 O -0.54 -20.71 16.49 -3.24 -0.05 -20.77 16 16 N -0.69 -17.69 5.55 -464.41 -2.58 -20.27 16 17 C 0.12 2.16 5.67 86.38 0.49 2.65 16 18 C -0.13 -1.85 5.52 30.59 0.17 -1.68 16 19 C 0.13 1.47 6.51 86.38 0.56 2.03 16 20 N -0.38 -6.08 3.68 -348.06 -1.28 -7.36 16 21 C 0.06 0.65 11.45 83.54 0.96 1.60 16 22 C -0.29 -3.83 10.80 21.99 0.24 -3.59 16 23 C 0.03 0.53 12.03 85.24 1.03 1.55 16 24 N -0.34 -7.38 12.42 -57.02 -0.71 -8.09 16 25 C -0.19 -8.04 9.96 30.62 0.30 -7.73 16 26 C -0.19 -7.32 9.92 30.62 0.30 -7.01 16 27 H 0.26 13.87 8.32 -92.71 -0.77 13.10 16 28 H 0.04 1.77 8.08 -2.38 -0.02 1.75 16 29 H 0.08 4.47 6.03 -2.39 -0.01 4.45 16 30 H 0.41 18.42 7.40 -92.71 -0.69 17.73 16 31 H 0.42 10.08 7.95 -92.71 -0.74 9.34 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.13 0.55 8.07 -2.39 -0.02 0.53 16 37 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.21 0.70 8.06 -2.91 -0.02 0.68 16 39 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 40 H 0.20 2.25 8.06 -2.91 -0.02 2.23 16 41 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 42 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 43 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 44 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 Total: -1.00 -68.05 380.40 1.12 -66.93 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: -0.40 Total: 37.86 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 6.37 Total: 12.25 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -6.78 Total: -115.48 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: -0.11 Total: -45.87 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -68.05 1.12 -66.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324159935.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.443 kcal (2) G-P(sol) polarization free energy of solvation -68.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds