Wall clock time and date at job start Tue Mar 31 2020 12:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99926 * 2 1 4 4 H 1.48499 * 109.47487 * 270.00156 * 3 2 1 5 5 H 1.48499 * 109.47559 * 30.00305 * 3 2 1 6 6 H 1.48499 * 109.47218 * 150.00212 * 3 2 1 7 7 C 1.37873 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99952 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99867 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47173 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47271 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.46990 * 305.00212 * 11 10 9 13 13 N 1.46904 * 109.46563 * 65.00272 * 11 10 9 14 14 C 1.50698 * 109.46908 * 184.99842 * 11 10 9 15 15 O 1.21282 * 119.99967 * 259.99839 * 14 11 10 16 16 N 1.34780 * 120.00123 * 80.00731 * 14 11 10 17 17 C 1.46497 * 119.99982 * 179.97438 * 16 14 11 18 18 C 1.50706 * 109.46689 * 179.97438 * 17 16 14 19 19 C 1.38277 * 119.93109 * 269.72161 * 18 17 16 20 20 C 1.38113 * 120.07073 * 179.76710 * 19 18 17 21 21 C 1.38862 * 119.92874 * 0.51315 * 20 19 18 22 22 N 1.39942 * 120.06932 * 179.72240 * 21 20 19 23 23 C 1.34783 * 120.00012 * 213.28890 * 22 21 20 24 24 N 1.34774 * 120.00039 * 185.31291 * 23 22 21 25 25 O 1.21586 * 119.99828 * 5.31890 * 23 22 21 26 26 C 1.38869 * 119.85859 * 359.74011 * 21 20 19 27 27 C 1.38106 * 119.93068 * 0.02562 * 26 21 20 28 28 H 0.97001 * 119.99705 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47159 * 60.00369 * 9 7 2 30 30 H 1.08998 * 109.46663 * 299.99849 * 9 7 2 31 31 H 1.09009 * 109.47029 * 59.99564 * 10 9 7 32 32 H 1.09002 * 109.46879 * 300.00364 * 10 9 7 33 33 H 1.00900 * 111.00515 * 60.00051 * 13 11 10 34 34 H 1.00908 * 110.99591 * 183.95283 * 13 11 10 35 35 H 0.96997 * 119.99548 * 359.97438 * 16 14 11 36 36 H 1.09002 * 109.47149 * 299.99618 * 17 16 14 37 37 H 1.08998 * 109.47311 * 59.99554 * 17 16 14 38 38 H 1.08006 * 119.96297 * 0.02562 * 19 18 17 39 39 H 1.08004 * 120.03582 * 180.23204 * 20 19 18 40 40 H 0.96999 * 119.99949 * 33.28947 * 22 21 20 41 41 H 0.97001 * 119.99929 * 0.02562 * 24 23 22 42 42 H 0.97000 * 120.00146 * 179.97438 * 24 23 22 43 43 H 1.08006 * 120.03319 * 179.97438 * 26 21 20 44 44 H 1.08002 * 119.96581 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 1 0.7884 -5.0067 0.8421 13 7 0.7282 -5.1187 -1.2549 14 6 2.4549 -6.1297 0.1239 15 8 2.7864 -6.7535 -0.8620 16 7 2.9582 -6.4585 1.3302 17 6 3.9053 -7.5697 1.4506 18 6 4.3127 -7.7283 2.8928 19 6 5.4143 -7.0473 3.3775 20 6 5.7874 -7.1868 4.6999 21 6 5.0614 -8.0203 5.5404 22 7 5.4403 -8.1683 6.8794 23 6 5.2581 -9.3483 7.5048 24 7 5.5227 -9.4610 8.8215 25 8 4.8552 -10.3111 6.8811 26 6 3.9587 -8.7069 5.0493 27 6 3.5879 -8.5594 3.7271 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5570 0.8897 31 1 2.8720 -3.6043 0.8895 32 1 2.8719 -3.6043 -0.8905 33 1 1.3477 -5.1033 -2.0512 34 1 0.1637 -5.9552 -1.2521 35 1 2.6932 -5.9594 2.1186 36 1 3.4333 -8.4887 1.1028 37 1 4.7874 -7.3625 0.8448 38 1 5.9810 -6.4024 2.7222 39 1 6.6456 -6.6517 5.0788 40 1 5.8341 -7.4218 7.3574 41 1 5.8439 -8.6928 9.3192 42 1 5.3912 -10.3100 9.2718 43 1 3.3923 -9.3563 5.7004 44 1 2.7307 -9.0935 3.3445 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325761970.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:05 Heat of formation + Delta-G solvation = -53.673437 kcal Electronic energy + Delta-G solvation = -25498.639993 eV Core-core repulsion = 21643.115085 eV Total energy + Delta-G solvation = -3855.524908 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.03043 -39.83953 -38.95346 -35.84355 -35.12213 -34.54322 -33.85044 -32.77336 -31.22460 -30.44254 -30.03420 -26.94339 -25.52458 -23.56098 -23.23857 -22.26147 -21.07434 -20.62727 -19.76892 -18.89883 -18.50785 -17.35507 -16.64353 -16.32239 -16.08083 -16.06296 -15.44235 -15.35093 -15.10374 -14.80540 -14.45702 -14.31016 -14.05975 -13.80530 -13.64768 -13.36276 -13.03261 -12.58109 -12.29082 -12.00385 -11.80381 -11.56014 -11.46378 -10.89052 -10.85964 -10.68020 -10.58948 -10.53018 -10.26007 -10.09860 -9.77453 -9.35018 -9.19069 -9.02191 -8.97122 -8.50456 -8.28729 -8.12904 -5.92555 -3.94571 0.89886 1.16189 2.26132 2.59864 2.83016 3.27587 3.35357 3.41560 3.44174 3.73441 3.84821 4.50778 4.51511 4.57187 4.73633 4.94045 5.04176 5.13018 5.16178 5.21597 5.42889 5.48563 5.58525 5.64254 5.73442 5.86522 5.87820 5.94390 6.16393 6.25671 6.33549 6.38892 6.44133 6.49655 6.68468 6.73314 7.11611 7.29341 7.42333 7.65507 7.78039 7.83867 7.98300 8.00127 8.15181 8.36633 8.50066 9.13542 9.68363 11.18341 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013376 B = 0.002318 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.754395 B =12078.087840 C =13511.274911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.052 0.948 9 C 0.031 3.969 10 C -0.095 4.095 11 C 0.079 3.921 12 H 0.098 0.902 13 N -0.807 5.807 14 C 0.483 3.517 15 O -0.555 6.555 16 N -0.726 5.726 17 C 0.161 3.839 18 C -0.121 4.121 19 C -0.077 4.077 20 C -0.148 4.148 21 C 0.168 3.832 22 N -0.685 5.685 23 C 0.705 3.295 24 N -0.862 5.862 25 O -0.574 6.574 26 C -0.122 4.122 27 C -0.080 4.080 28 H 0.259 0.741 29 H 0.035 0.965 30 H 0.013 0.987 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.348 0.652 34 H 0.334 0.666 35 H 0.404 0.596 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.408 0.592 41 H 0.399 0.601 42 H 0.419 0.581 43 H 0.136 0.864 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.553 -18.558 17.786 28.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.133 4.133 11 C -0.037 4.037 12 H 0.115 0.885 13 N -0.335 5.335 14 C 0.268 3.732 15 O -0.433 6.433 16 N -0.379 5.379 17 C 0.038 3.962 18 C -0.123 4.123 19 C -0.097 4.097 20 C -0.168 4.168 21 C 0.073 3.927 22 N -0.333 5.333 23 C 0.403 3.597 24 N -0.430 5.430 25 O -0.450 6.450 26 C -0.142 4.142 27 C -0.099 4.099 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.031 0.969 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.162 0.838 34 H 0.145 0.855 35 H 0.238 0.762 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.244 0.756 41 H 0.227 0.773 42 H 0.251 0.749 43 H 0.154 0.846 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.928 -18.945 16.667 27.498 hybrid contribution 1.360 0.639 1.147 1.890 sum 12.288 -18.306 17.814 28.345 Atomic orbital electron populations 1.69978 1.05933 1.26371 1.50901 1.24997 0.94813 0.99047 0.95548 0.86651 0.79787 0.83793 0.78064 1.20733 1.21318 1.20042 1.21281 0.92884 0.91334 1.50469 0.93002 1.19019 0.93581 0.89828 0.98199 1.21654 0.98836 0.92192 1.00657 1.21834 0.93542 0.93274 0.95074 0.88452 1.59009 1.26919 1.44261 1.03297 1.22776 0.82195 0.85717 0.82472 1.90646 1.61204 1.54323 1.37140 1.46260 1.46491 1.34690 1.10462 1.20121 0.93490 0.90723 0.91899 1.19885 0.97235 0.99463 0.95682 1.20904 0.96099 0.97972 0.94676 1.20828 1.00288 1.02257 0.93452 1.17510 0.94098 0.98442 0.82664 1.42577 1.65954 1.13490 1.11322 1.15947 0.78492 0.83038 0.82191 1.42976 1.74115 1.17552 1.08392 1.91020 1.51727 1.37229 1.65055 1.21137 0.95786 1.00895 0.96414 1.20982 0.98980 0.97141 0.92778 0.93124 0.94659 0.96890 0.92828 0.92860 0.83846 0.85472 0.76151 0.90957 0.90860 0.85178 0.85505 0.75649 0.77287 0.74867 0.84583 0.85458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 10 C -0.10 -1.92 4.78 -26.73 -0.13 -2.04 16 11 C 0.08 1.32 3.15 -68.87 -0.22 1.11 16 12 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 13 N -0.81 -13.76 8.44 -5.66 -0.05 -13.81 16 14 C 0.48 7.62 7.07 -10.98 -0.08 7.54 16 15 O -0.56 -10.30 16.25 5.56 0.09 -10.21 16 16 N -0.73 -9.15 5.55 -61.47 -0.34 -9.49 16 17 C 0.16 1.83 5.80 -5.19 -0.03 1.80 16 18 C -0.12 -1.22 5.25 -104.59 -0.55 -1.77 16 19 C -0.08 -0.71 9.69 -39.61 -0.38 -1.10 16 20 C -0.15 -1.22 9.96 -39.40 -0.39 -1.62 16 21 C 0.17 1.53 6.28 -83.69 -0.53 1.01 16 22 N -0.69 -4.49 5.35 -14.22 -0.08 -4.56 16 23 C 0.70 5.65 8.57 -86.92 -0.75 4.90 16 24 N -0.86 -2.91 8.88 27.63 0.25 -2.66 16 25 O -0.57 -7.24 14.86 5.29 0.08 -7.16 16 26 C -0.12 -1.28 8.65 -39.40 -0.34 -1.62 16 27 C -0.08 -0.80 9.69 -39.61 -0.38 -1.18 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 32 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.35 6.02 8.58 -39.29 -0.34 5.68 16 34 H 0.33 4.95 9.06 -39.29 -0.36 4.59 16 35 H 0.40 4.52 8.46 -40.82 -0.35 4.18 16 36 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 37 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 38 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 39 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 40 H 0.41 1.24 8.83 -40.82 -0.36 0.88 16 41 H 0.40 0.06 8.85 -40.82 -0.36 -0.30 16 42 H 0.42 1.09 8.93 -40.82 -0.36 0.72 16 43 H 0.14 1.54 6.41 -52.48 -0.34 1.21 16 44 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 377.64 15.07 5.69 5.69 Total: -1.00 -36.92 377.64 -9.17 -46.09 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -6.20 Total: 11.42 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -4.32 Total: -5.80 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.52 Total: -56.70 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: 0.17 Total: -17.37 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.92 -9.17 -46.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325761970.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.583 kcal (2) G-P(sol) polarization free energy of solvation -36.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds