Wall clock time and date at job start Tue Mar 31 2020 12:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99926 * 2 1 4 4 H 1.48499 * 109.47487 * 270.00156 * 3 2 1 5 5 H 1.48499 * 109.47559 * 30.00305 * 3 2 1 6 6 H 1.48499 * 109.47218 * 150.00212 * 3 2 1 7 7 C 1.37873 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99952 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99867 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47173 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47271 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.46990 * 305.00212 * 11 10 9 13 13 N 1.46904 * 109.46563 * 65.00272 * 11 10 9 14 14 C 1.50698 * 109.46908 * 184.99842 * 11 10 9 15 15 O 1.21282 * 119.99967 * 259.99839 * 14 11 10 16 16 N 1.34780 * 120.00123 * 80.00731 * 14 11 10 17 17 C 1.46497 * 119.99982 * 179.97438 * 16 14 11 18 18 C 1.50706 * 109.46689 * 179.97438 * 17 16 14 19 19 C 1.38277 * 119.93109 * 269.72161 * 18 17 16 20 20 C 1.38113 * 120.07073 * 179.76710 * 19 18 17 21 21 C 1.38862 * 119.92874 * 0.51315 * 20 19 18 22 22 N 1.39942 * 120.06932 * 179.72240 * 21 20 19 23 23 C 1.34783 * 120.00012 * 213.28890 * 22 21 20 24 24 N 1.34774 * 120.00039 * 185.31291 * 23 22 21 25 25 O 1.21586 * 119.99828 * 5.31890 * 23 22 21 26 26 C 1.38869 * 119.85859 * 359.74011 * 21 20 19 27 27 C 1.38106 * 119.93068 * 0.02562 * 26 21 20 28 28 H 0.97001 * 119.99705 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47159 * 60.00369 * 9 7 2 30 30 H 1.08998 * 109.46663 * 299.99849 * 9 7 2 31 31 H 1.09009 * 109.47029 * 59.99564 * 10 9 7 32 32 H 1.09002 * 109.46879 * 300.00364 * 10 9 7 33 33 H 1.00900 * 111.00515 * 60.00051 * 13 11 10 34 34 H 1.00908 * 110.99591 * 183.95283 * 13 11 10 35 35 H 0.96997 * 119.99548 * 359.97438 * 16 14 11 36 36 H 1.09002 * 109.47149 * 299.99618 * 17 16 14 37 37 H 1.08998 * 109.47311 * 59.99554 * 17 16 14 38 38 H 1.08006 * 119.96297 * 0.02562 * 19 18 17 39 39 H 1.08004 * 120.03582 * 180.23204 * 20 19 18 40 40 H 0.96999 * 119.99949 * 33.28947 * 22 21 20 41 41 H 0.97001 * 119.99929 * 0.02562 * 24 23 22 42 42 H 0.97000 * 120.00146 * 179.97438 * 24 23 22 43 43 H 1.08006 * 120.03319 * 179.97438 * 26 21 20 44 44 H 1.08002 * 119.96581 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 1 0.7884 -5.0067 0.8421 13 7 0.7282 -5.1187 -1.2549 14 6 2.4549 -6.1297 0.1239 15 8 2.7864 -6.7535 -0.8620 16 7 2.9582 -6.4585 1.3302 17 6 3.9053 -7.5697 1.4506 18 6 4.3127 -7.7283 2.8928 19 6 5.4143 -7.0473 3.3775 20 6 5.7874 -7.1868 4.6999 21 6 5.0614 -8.0203 5.5404 22 7 5.4403 -8.1683 6.8794 23 6 5.2581 -9.3483 7.5048 24 7 5.5227 -9.4610 8.8215 25 8 4.8552 -10.3111 6.8811 26 6 3.9587 -8.7069 5.0493 27 6 3.5879 -8.5594 3.7271 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5570 0.8897 31 1 2.8720 -3.6043 0.8895 32 1 2.8719 -3.6043 -0.8905 33 1 1.3477 -5.1033 -2.0512 34 1 0.1637 -5.9552 -1.2521 35 1 2.6932 -5.9594 2.1186 36 1 3.4333 -8.4887 1.1028 37 1 4.7874 -7.3625 0.8448 38 1 5.9810 -6.4024 2.7222 39 1 6.6456 -6.6517 5.0788 40 1 5.8341 -7.4218 7.3574 41 1 5.8439 -8.6928 9.3192 42 1 5.3912 -10.3100 9.2718 43 1 3.3923 -9.3563 5.7004 44 1 2.7307 -9.0935 3.3445 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325761970.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:04 Heat of formation + Delta-G solvation = -84.628331 kcal Electronic energy + Delta-G solvation = -25499.982298 eV Core-core repulsion = 21643.115085 eV Total energy + Delta-G solvation = -3856.867213 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.68034 -41.01867 -39.75208 -36.93119 -36.46502 -35.34926 -34.78170 -34.49450 -31.93479 -31.89971 -31.23862 -28.34496 -26.86743 -24.99967 -24.06911 -23.02985 -22.28378 -21.76171 -21.13860 -19.44903 -19.06513 -18.75352 -18.06931 -17.56846 -17.04258 -16.90014 -16.67491 -16.43923 -16.19634 -15.95659 -15.62446 -15.31102 -15.15975 -14.92298 -14.55313 -14.38867 -14.25257 -13.84667 -13.78305 -13.53730 -13.34875 -12.78960 -12.62137 -12.49488 -12.25953 -12.18882 -11.75269 -11.63783 -11.56207 -11.30679 -11.20184 -10.96448 -10.74282 -10.46709 -10.13489 -9.89496 -9.63661 -9.05716 -8.11390 -6.21501 0.16123 0.44392 1.43425 1.44972 1.53965 1.56082 1.74915 1.95854 2.29178 2.46768 2.90729 3.21605 3.47977 3.61692 3.69026 3.87465 3.93280 4.05022 4.14513 4.27584 4.36179 4.42624 4.56220 4.70498 4.72830 4.82267 4.98290 5.07265 5.21730 5.26780 5.28921 5.37993 5.49327 5.60093 5.62502 5.82211 5.87670 5.93001 6.01775 6.03291 6.13254 6.33129 6.48307 6.56792 6.91983 6.97447 7.16557 7.46430 7.49881 8.99817 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013376 B = 0.002318 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.754395 B =12078.087840 C =13511.274911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.001 4.001 3 Si 0.960 3.040 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.541 4.541 8 H 0.057 0.943 9 C 0.039 3.961 10 C -0.081 4.081 11 C 0.085 3.915 12 H 0.109 0.891 13 N -0.819 5.819 14 C 0.489 3.511 15 O -0.583 6.583 16 N -0.711 5.711 17 C 0.165 3.835 18 C -0.127 4.127 19 C -0.080 4.080 20 C -0.143 4.143 21 C 0.164 3.836 22 N -0.673 5.673 23 C 0.698 3.302 24 N -0.839 5.839 25 O -0.625 6.625 26 C -0.140 4.140 27 C -0.084 4.084 28 H 0.261 0.739 29 H 0.005 0.995 30 H -0.007 1.007 31 H 0.068 0.932 32 H 0.043 0.957 33 H 0.345 0.655 34 H 0.346 0.654 35 H 0.413 0.587 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.142 0.858 39 H 0.155 0.845 40 H 0.426 0.574 41 H 0.417 0.583 42 H 0.424 0.576 43 H 0.122 0.878 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.560 -17.913 19.413 29.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.785 3.215 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.579 4.579 8 H 0.075 0.925 9 C 0.001 3.999 10 C -0.120 4.120 11 C -0.030 4.030 12 H 0.127 0.873 13 N -0.348 5.348 14 C 0.275 3.725 15 O -0.463 6.463 16 N -0.362 5.362 17 C 0.042 3.958 18 C -0.129 4.129 19 C -0.099 4.099 20 C -0.163 4.163 21 C 0.069 3.931 22 N -0.323 5.323 23 C 0.396 3.604 24 N -0.408 5.408 25 O -0.505 6.505 26 C -0.160 4.160 27 C -0.103 4.103 28 H 0.070 0.930 29 H 0.023 0.977 30 H 0.012 0.988 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.249 0.751 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.159 0.841 39 H 0.173 0.827 40 H 0.265 0.735 41 H 0.249 0.751 42 H 0.258 0.742 43 H 0.140 0.860 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 12.973 -18.279 18.390 28.993 hybrid contribution 0.739 0.402 0.732 1.115 sum 13.711 -17.877 19.122 29.551 Atomic orbital electron populations 1.70113 1.07655 1.27454 1.51865 1.25922 0.95716 1.03089 0.95090 0.85526 0.78790 0.78918 0.78255 1.20276 1.20841 1.18631 1.21737 0.93391 0.92673 1.50140 0.92498 1.18834 0.93915 0.91404 0.95714 1.21390 0.97708 0.91988 1.00886 1.21637 0.93742 0.92176 0.95481 0.87313 1.58986 1.27245 1.45274 1.03323 1.22357 0.81919 0.85286 0.82960 1.90640 1.62124 1.55298 1.38282 1.46156 1.45730 1.34615 1.09741 1.20124 0.92859 0.89883 0.92898 1.19737 0.98018 1.00341 0.94768 1.21115 0.95725 0.97728 0.95366 1.21082 1.00658 1.01722 0.92857 1.17666 0.93629 0.97994 0.83858 1.42427 1.65507 1.13788 1.10576 1.16201 0.78265 0.82696 0.83196 1.42782 1.72586 1.18658 1.06803 1.90992 1.54048 1.38991 1.66478 1.21132 0.96763 1.01584 0.96527 1.21033 0.99249 0.97284 0.92773 0.92993 0.97669 0.98812 0.91291 0.93830 0.84125 0.84069 0.75108 0.91254 0.91096 0.84052 0.82691 0.73464 0.75110 0.74184 0.86023 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.73 13.29 21.45 0.28 -56.45 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.96 44.17 29.54 68.60 2.03 46.19 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 7 C -0.54 -30.55 9.11 25.60 0.23 -30.32 16 8 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 9 C 0.04 2.00 4.86 29.85 0.15 2.14 16 10 C -0.08 -3.25 4.78 30.59 0.15 -3.10 16 11 C 0.09 2.83 3.15 44.17 0.14 2.97 16 12 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 13 N -0.82 -27.98 8.44 -171.81 -1.45 -29.43 16 14 C 0.49 14.98 7.07 87.66 0.62 15.60 16 15 O -0.58 -21.27 16.25 -3.04 -0.05 -21.32 16 16 N -0.71 -16.95 5.55 -466.78 -2.59 -19.54 16 17 C 0.17 3.58 5.80 85.64 0.50 4.08 16 18 C -0.13 -2.40 5.25 -19.84 -0.10 -2.51 16 19 C -0.08 -1.31 9.69 22.25 0.22 -1.10 16 20 C -0.14 -2.01 9.96 22.39 0.22 -1.79 16 21 C 0.16 2.76 6.28 38.15 0.24 3.00 16 22 N -0.67 -7.58 5.35 -317.17 -1.70 -9.28 16 23 C 0.70 10.40 8.57 179.05 1.54 11.94 16 24 N -0.84 -4.09 8.88 -184.75 -1.64 -5.73 16 25 O -0.62 -15.83 14.86 -3.99 -0.06 -15.89 16 26 C -0.14 -2.90 8.65 22.39 0.19 -2.70 16 27 C -0.08 -1.66 9.69 22.25 0.22 -1.44 16 28 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 29 H 0.00 0.28 7.75 -2.39 -0.02 0.26 16 30 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 31 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 32 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.35 12.05 8.58 -89.69 -0.77 11.28 16 34 H 0.35 10.18 9.06 -89.69 -0.81 9.37 16 35 H 0.41 8.53 8.46 -92.71 -0.78 7.75 16 36 H 0.07 1.57 8.08 -2.39 -0.02 1.55 16 37 H 0.07 1.61 8.08 -2.39 -0.02 1.59 16 38 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 39 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 40 H 0.43 1.40 8.83 -92.71 -0.82 0.58 16 41 H 0.42 -0.98 8.85 -92.71 -0.82 -1.80 16 42 H 0.42 1.53 8.93 -92.71 -0.83 0.70 16 43 H 0.12 2.87 6.41 -2.91 -0.02 2.85 16 44 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -80.38 377.64 -4.14 -84.52 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: -3.73 Total: 29.71 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 4.76 Total: -2.81 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -7.09 Total: -120.42 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -0.11 Total: -37.21 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -80.38 -4.14 -84.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325761970.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.106 kcal (2) G-P(sol) polarization free energy of solvation -80.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds