Wall clock time and date at job start Tue Mar 31 2020 12:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99433 * 2 1 4 4 H 1.48501 * 109.47133 * 239.99610 * 3 2 1 5 5 H 1.48504 * 109.47353 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47273 * 119.99751 * 3 2 1 7 7 C 1.37867 * 120.00612 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00611 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99919 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46985 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46764 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.47283 * 55.00165 * 11 10 9 13 13 N 1.46894 * 109.47303 * 295.00159 * 11 10 9 14 14 C 1.50700 * 109.47169 * 175.00034 * 11 10 9 15 15 O 1.21281 * 120.00122 * 100.00083 * 14 11 10 16 16 N 1.34783 * 119.99763 * 280.00342 * 14 11 10 17 17 C 1.39925 * 119.99546 * 184.62030 * 16 14 11 18 18 C 1.38874 * 120.06378 * 144.91089 * 17 16 14 19 19 C 1.38117 * 119.92396 * 180.29870 * 18 17 16 20 20 C 1.38283 * 120.06752 * 359.41825 * 19 18 17 21 21 C 1.50706 * 119.92568 * 180.32130 * 20 19 18 22 22 N 1.46496 * 109.47255 * 270.27957 * 21 20 19 23 23 C 1.34776 * 119.99888 * 180.02562 * 22 21 20 24 24 N 1.34778 * 119.99959 * 180.02562 * 23 22 21 25 25 O 1.21589 * 120.00345 * 0.02562 * 23 22 21 26 26 C 1.38279 * 120.14490 * 0.60810 * 20 19 18 27 27 C 1.38110 * 120.06591 * 359.67095 * 26 20 19 28 28 H 0.96996 * 120.00650 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46752 * 59.99933 * 9 7 2 30 30 H 1.08992 * 109.46813 * 299.99953 * 9 7 2 31 31 H 1.08991 * 109.47233 * 60.00077 * 10 9 7 32 32 H 1.08998 * 109.46927 * 299.99506 * 10 9 7 33 33 H 1.00906 * 111.00362 * 176.04786 * 13 11 10 34 34 H 1.00910 * 111.00118 * 300.00041 * 13 11 10 35 35 H 0.97003 * 120.00217 * 4.61241 * 16 14 11 36 36 H 1.07991 * 120.04091 * 0.02562 * 18 17 16 37 37 H 1.07997 * 119.96553 * 179.69927 * 19 18 17 38 38 H 1.08997 * 109.47245 * 30.28528 * 21 20 19 39 39 H 1.09007 * 109.46869 * 150.28142 * 21 20 19 40 40 H 0.97002 * 120.00201 * 0.02562 * 22 21 20 41 41 H 0.96995 * 120.00433 * 359.97438 * 24 23 22 42 42 H 0.97001 * 119.99775 * 180.02562 * 24 23 22 43 43 H 1.07995 * 119.96737 * 179.69819 * 26 20 19 44 44 H 1.08001 * 120.03247 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1027 1.6967 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2456 -3.6620 0.0005 11 6 1.4806 -4.9870 0.0012 12 1 0.7882 -5.0073 -0.8404 13 7 0.7293 -5.1181 1.2566 14 6 2.4553 -6.1297 -0.1226 15 8 2.7874 -6.7530 0.8633 16 7 2.9578 -6.4591 -1.3291 17 6 3.7864 -7.5790 -1.4598 18 6 3.7322 -8.3540 -2.6109 19 6 4.5470 -9.4624 -2.7342 20 6 5.4245 -9.7937 -1.7181 21 6 6.3173 -10.9997 -1.8591 22 7 5.6312 -12.1800 -1.3278 23 6 6.2424 -13.3810 -1.3484 24 7 5.6110 -14.4670 -0.8601 25 8 7.3635 -13.4848 -1.8076 26 6 5.4805 -9.0244 -0.5705 27 6 4.6642 -7.9181 -0.4386 28 1 -0.4851 0.8400 -0.0004 29 1 0.6249 -2.5571 -0.8897 30 1 0.6242 -2.5567 0.8902 31 1 2.8722 -3.6042 0.8904 32 1 2.8721 -3.6042 -0.8895 33 1 0.1650 -5.9546 1.2547 34 1 1.3494 -5.1021 2.0525 35 1 2.7450 -5.9198 -2.1069 36 1 3.0507 -8.0930 -3.4068 37 1 4.5020 -10.0684 -3.6270 38 1 6.5503 -11.1581 -2.9120 39 1 7.2405 -10.8353 -1.3034 40 1 4.7370 -12.0972 -0.9611 41 1 4.7169 -14.3842 -0.4934 42 1 6.0512 -15.3313 -0.8746 43 1 6.1634 -9.2885 0.2234 44 1 4.7087 -7.3173 0.4578 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327855348.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:13 Heat of formation + Delta-G solvation = -54.415538 kcal Electronic energy + Delta-G solvation = -25400.576171 eV Core-core repulsion = 21545.019084 eV Total energy + Delta-G solvation = -3855.557088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.81622 -40.14789 -38.93609 -35.90754 -35.27050 -34.40926 -33.82564 -32.87562 -31.20763 -30.49163 -30.16962 -26.99675 -25.67896 -23.78533 -23.21044 -21.80409 -21.41340 -20.71870 -19.89506 -18.73870 -18.03563 -17.74405 -17.29013 -16.28300 -16.01048 -15.69986 -15.56606 -15.20906 -15.13133 -14.85466 -14.51833 -14.36246 -14.33525 -13.78482 -13.65813 -13.57178 -12.97376 -12.84663 -12.39627 -12.13651 -11.88198 -11.65757 -11.46262 -10.92039 -10.82734 -10.71787 -10.64905 -10.45128 -10.17460 -10.09981 -9.87920 -9.45813 -9.39642 -9.17678 -9.07474 -8.50374 -8.33652 -8.27021 -5.98564 -4.01255 0.87184 1.16379 2.44362 2.69135 2.86069 2.97244 3.33006 3.37892 3.40126 3.56768 4.16675 4.37596 4.45324 4.53928 4.68666 4.74423 4.89633 5.01730 5.12709 5.30136 5.35570 5.38182 5.43052 5.49320 5.67544 5.77679 5.97036 6.04941 6.12186 6.27376 6.30570 6.31628 6.34942 6.52185 6.53187 6.79789 6.98055 7.16958 7.37295 7.56955 7.65641 7.69697 7.88740 8.02138 8.06544 8.25074 8.42062 9.06250 9.62324 11.12152 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030567 B = 0.001903 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.812488 B =14709.432123 C =15074.095765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.052 0.948 9 C 0.031 3.969 10 C -0.097 4.097 11 C 0.081 3.919 12 H 0.102 0.898 13 N -0.805 5.805 14 C 0.484 3.516 15 O -0.533 6.533 16 N -0.675 5.675 17 C 0.162 3.838 18 C -0.151 4.151 19 C -0.080 4.080 20 C -0.136 4.136 21 C 0.184 3.816 22 N -0.741 5.741 23 C 0.704 3.296 24 N -0.869 5.869 25 O -0.597 6.597 26 C -0.080 4.080 27 C -0.124 4.124 28 H 0.260 0.740 29 H 0.014 0.986 30 H 0.036 0.964 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.335 0.665 34 H 0.349 0.651 35 H 0.415 0.585 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.398 0.602 41 H 0.397 0.603 42 H 0.414 0.586 43 H 0.126 0.874 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.463 -25.458 -4.474 26.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.563 4.563 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.135 4.135 11 C -0.035 4.035 12 H 0.120 0.880 13 N -0.333 5.333 14 C 0.272 3.728 15 O -0.408 6.408 16 N -0.321 5.321 17 C 0.066 3.934 18 C -0.171 4.171 19 C -0.099 4.099 20 C -0.137 4.137 21 C 0.061 3.939 22 N -0.397 5.397 23 C 0.402 3.598 24 N -0.437 5.437 25 O -0.475 6.475 26 C -0.099 4.099 27 C -0.144 4.144 28 H 0.070 0.930 29 H 0.032 0.968 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.147 0.853 34 H 0.163 0.837 35 H 0.252 0.748 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.232 0.768 41 H 0.225 0.775 42 H 0.246 0.754 43 H 0.144 0.856 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.081 -24.925 -4.357 26.275 hybrid contribution 0.174 0.047 0.032 0.183 sum 7.255 -24.878 -4.325 26.273 Atomic orbital electron populations 1.69954 1.05949 1.26611 1.50580 1.24981 0.94814 0.99075 0.95382 0.86705 0.79609 0.83371 0.78552 1.20356 1.21303 1.20304 1.21224 0.92871 0.91285 1.50965 0.93007 1.19017 0.93508 0.89745 0.98293 1.21703 0.98954 0.92024 1.00847 1.21904 0.93339 0.92840 0.95459 0.88009 1.58988 1.26778 1.44357 1.03131 1.23135 0.81833 0.85813 0.82062 1.90643 1.60019 1.53391 1.36769 1.43894 1.48204 1.27557 1.12410 1.17977 0.91237 0.88774 0.95395 1.20943 1.02055 0.95839 0.98305 1.20827 0.94637 0.96117 0.98345 1.19763 1.00112 0.98138 0.95672 1.19992 0.93672 0.80512 0.99773 1.45232 1.20465 1.06762 1.67248 1.15994 0.84242 0.80764 0.78783 1.43000 1.21387 1.10421 1.68876 1.90980 1.18657 1.85173 1.52711 1.20988 0.98063 0.94218 0.96638 1.21352 0.94426 0.98651 1.00016 0.92993 0.96808 0.94588 0.92656 0.92714 0.85289 0.83663 0.74799 0.85402 0.85582 0.90733 0.90726 0.76758 0.77523 0.75388 0.85646 0.84080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.53 -14.44 9.11 -34.44 -0.31 -14.76 16 8 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 9 C 0.03 0.77 4.86 -27.88 -0.14 0.63 16 10 C -0.10 -1.82 4.78 -26.73 -0.13 -1.95 16 11 C 0.08 1.22 3.15 -68.87 -0.22 1.01 16 12 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 13 N -0.80 -12.44 8.44 -5.66 -0.05 -12.49 16 14 C 0.48 6.82 6.91 -10.98 -0.08 6.74 16 15 O -0.53 -8.66 13.69 5.56 0.08 -8.58 16 16 N -0.68 -7.75 5.34 -9.86 -0.05 -7.81 16 17 C 0.16 1.83 6.30 -83.70 -0.53 1.30 16 18 C -0.15 -1.36 9.97 -39.39 -0.39 -1.75 16 19 C -0.08 -0.64 9.69 -39.61 -0.38 -1.03 16 20 C -0.14 -1.14 5.25 -104.59 -0.55 -1.69 16 21 C 0.18 1.48 5.79 -5.19 -0.03 1.45 16 22 N -0.74 -5.34 5.55 -66.41 -0.37 -5.71 16 23 C 0.70 6.39 8.84 -86.92 -0.77 5.62 16 24 N -0.87 -4.21 8.88 27.63 0.25 -3.96 16 25 O -0.60 -8.22 17.18 5.29 0.09 -8.13 16 26 C -0.08 -0.77 9.69 -39.61 -0.38 -1.16 16 27 C -0.12 -1.49 8.70 -39.40 -0.34 -1.83 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.04 0.96 7.75 -51.93 -0.40 0.56 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.34 4.44 9.06 -39.29 -0.36 4.09 16 34 H 0.35 5.47 8.58 -39.29 -0.34 5.13 16 35 H 0.42 3.84 8.82 -40.82 -0.36 3.48 16 36 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 39 H 0.07 0.65 8.08 -51.92 -0.42 0.23 16 40 H 0.40 2.11 8.48 -40.82 -0.35 1.76 16 41 H 0.40 0.79 8.84 -40.82 -0.36 0.43 16 42 H 0.41 1.65 8.93 -40.82 -0.36 1.28 16 43 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.14 1.97 6.23 -52.49 -0.33 1.64 16 LS Contribution 377.38 15.07 5.69 5.69 Total: -1.00 -35.30 377.38 -9.19 -44.50 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -6.19 Total: 11.59 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -4.34 Total: -5.84 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: 0.51 Total: -55.57 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: 0.17 Total: -16.71 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.30 -9.19 -44.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327855348.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.917 kcal (2) G-P(sol) polarization free energy of solvation -35.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds