Wall clock time and date at job start Tue Mar 31 2020 12:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99433 * 2 1 4 4 H 1.48501 * 109.47133 * 239.99610 * 3 2 1 5 5 H 1.48504 * 109.47353 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47273 * 119.99751 * 3 2 1 7 7 C 1.37867 * 120.00612 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00611 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99919 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46985 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46764 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.47283 * 55.00165 * 11 10 9 13 13 N 1.46894 * 109.47303 * 295.00159 * 11 10 9 14 14 C 1.50700 * 109.47169 * 175.00034 * 11 10 9 15 15 O 1.21281 * 120.00122 * 100.00083 * 14 11 10 16 16 N 1.34783 * 119.99763 * 280.00342 * 14 11 10 17 17 C 1.39925 * 119.99546 * 184.62030 * 16 14 11 18 18 C 1.38874 * 120.06378 * 144.91089 * 17 16 14 19 19 C 1.38117 * 119.92396 * 180.29870 * 18 17 16 20 20 C 1.38283 * 120.06752 * 359.41825 * 19 18 17 21 21 C 1.50706 * 119.92568 * 180.32130 * 20 19 18 22 22 N 1.46496 * 109.47255 * 270.27957 * 21 20 19 23 23 C 1.34776 * 119.99888 * 180.02562 * 22 21 20 24 24 N 1.34778 * 119.99959 * 180.02562 * 23 22 21 25 25 O 1.21589 * 120.00345 * 0.02562 * 23 22 21 26 26 C 1.38279 * 120.14490 * 0.60810 * 20 19 18 27 27 C 1.38110 * 120.06591 * 359.67095 * 26 20 19 28 28 H 0.96996 * 120.00650 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46752 * 59.99933 * 9 7 2 30 30 H 1.08992 * 109.46813 * 299.99953 * 9 7 2 31 31 H 1.08991 * 109.47233 * 60.00077 * 10 9 7 32 32 H 1.08998 * 109.46927 * 299.99506 * 10 9 7 33 33 H 1.00906 * 111.00362 * 176.04786 * 13 11 10 34 34 H 1.00910 * 111.00118 * 300.00041 * 13 11 10 35 35 H 0.97003 * 120.00217 * 4.61241 * 16 14 11 36 36 H 1.07991 * 120.04091 * 0.02562 * 18 17 16 37 37 H 1.07997 * 119.96553 * 179.69927 * 19 18 17 38 38 H 1.08997 * 109.47245 * 30.28528 * 21 20 19 39 39 H 1.09007 * 109.46869 * 150.28142 * 21 20 19 40 40 H 0.97002 * 120.00201 * 0.02562 * 22 21 20 41 41 H 0.96995 * 120.00433 * 359.97438 * 24 23 22 42 42 H 0.97001 * 119.99775 * 180.02562 * 24 23 22 43 43 H 1.07995 * 119.96737 * 179.69819 * 26 20 19 44 44 H 1.08001 * 120.03247 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1027 1.6967 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2456 -3.6620 0.0005 11 6 1.4806 -4.9870 0.0012 12 1 0.7882 -5.0073 -0.8404 13 7 0.7293 -5.1181 1.2566 14 6 2.4553 -6.1297 -0.1226 15 8 2.7874 -6.7530 0.8633 16 7 2.9578 -6.4591 -1.3291 17 6 3.7864 -7.5790 -1.4598 18 6 3.7322 -8.3540 -2.6109 19 6 4.5470 -9.4624 -2.7342 20 6 5.4245 -9.7937 -1.7181 21 6 6.3173 -10.9997 -1.8591 22 7 5.6312 -12.1800 -1.3278 23 6 6.2424 -13.3810 -1.3484 24 7 5.6110 -14.4670 -0.8601 25 8 7.3635 -13.4848 -1.8076 26 6 5.4805 -9.0244 -0.5705 27 6 4.6642 -7.9181 -0.4386 28 1 -0.4851 0.8400 -0.0004 29 1 0.6249 -2.5571 -0.8897 30 1 0.6242 -2.5567 0.8902 31 1 2.8722 -3.6042 0.8904 32 1 2.8721 -3.6042 -0.8895 33 1 0.1650 -5.9546 1.2547 34 1 1.3494 -5.1021 2.0525 35 1 2.7450 -5.9198 -2.1069 36 1 3.0507 -8.0930 -3.4068 37 1 4.5020 -10.0684 -3.6270 38 1 6.5503 -11.1581 -2.9120 39 1 7.2405 -10.8353 -1.3034 40 1 4.7370 -12.0972 -0.9611 41 1 4.7169 -14.3842 -0.4934 42 1 6.0512 -15.3313 -0.8746 43 1 6.1634 -9.2885 0.2234 44 1 4.7087 -7.3173 0.4578 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327855348.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:13 Heat of formation + Delta-G solvation = -83.884994 kcal Electronic energy + Delta-G solvation = -25401.854063 eV Core-core repulsion = 21545.019084 eV Total energy + Delta-G solvation = -3856.834979 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.78083 -40.88763 -39.80978 -37.01216 -36.48657 -35.22931 -34.82646 -34.42977 -31.99813 -31.89251 -31.24807 -28.36048 -26.83827 -25.23904 -24.01078 -22.83729 -22.20198 -21.98151 -21.11177 -19.34781 -19.01201 -18.50908 -18.32169 -18.11846 -17.08163 -16.63075 -16.51856 -16.37655 -16.01993 -15.87224 -15.78892 -15.47125 -15.11107 -15.00267 -14.54244 -14.40927 -14.25508 -13.86290 -13.76338 -13.58918 -13.41101 -12.78253 -12.72221 -12.49219 -12.28329 -12.19533 -11.75330 -11.68742 -11.56629 -11.31422 -11.20413 -10.96664 -10.73174 -10.47943 -10.00401 -9.91661 -9.67617 -9.16391 -8.13379 -6.23377 0.08629 0.42273 1.40370 1.43167 1.44532 1.52323 1.97838 2.07238 2.17124 2.44849 2.82681 3.19840 3.49179 3.68033 3.71290 3.73665 3.90095 4.03940 4.07941 4.28720 4.30084 4.41678 4.56583 4.72887 4.74066 4.77350 4.92315 5.06604 5.21094 5.24855 5.33988 5.41348 5.48464 5.57770 5.59113 5.85155 5.88182 5.99234 5.99630 6.04729 6.07228 6.30702 6.33688 6.50485 6.95314 6.99704 7.07404 7.44754 7.64928 8.97319 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.030567 B = 0.001903 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.812488 B =14709.432123 C =15074.095765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.003 3.997 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.084 4.084 11 C 0.089 3.911 12 H 0.117 0.883 13 N -0.818 5.818 14 C 0.491 3.509 15 O -0.556 6.556 16 N -0.663 5.663 17 C 0.139 3.861 18 C -0.143 4.143 19 C -0.074 4.074 20 C -0.123 4.123 21 C 0.188 3.812 22 N -0.730 5.730 23 C 0.699 3.301 24 N -0.849 5.849 25 O -0.648 6.648 26 C -0.083 4.083 27 C -0.145 4.145 28 H 0.262 0.738 29 H -0.003 1.003 30 H 0.007 0.993 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.348 0.652 34 H 0.346 0.654 35 H 0.426 0.574 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.410 0.590 41 H 0.413 0.587 42 H 0.420 0.580 43 H 0.132 0.868 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.911 -26.596 -5.830 28.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.782 3.218 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.122 4.122 11 C -0.026 4.026 12 H 0.134 0.866 13 N -0.347 5.347 14 C 0.278 3.722 15 O -0.434 6.434 16 N -0.309 5.309 17 C 0.044 3.956 18 C -0.163 4.163 19 C -0.093 4.093 20 C -0.124 4.124 21 C 0.064 3.936 22 N -0.387 5.387 23 C 0.397 3.603 24 N -0.418 5.418 25 O -0.530 6.530 26 C -0.102 4.102 27 C -0.165 4.165 28 H 0.070 0.930 29 H 0.015 0.985 30 H 0.025 0.975 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.265 0.735 36 H 0.169 0.831 37 H 0.170 0.830 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.246 0.754 41 H 0.244 0.756 42 H 0.253 0.747 43 H 0.150 0.850 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.490 -26.093 -5.722 27.743 hybrid contribution 0.032 0.310 0.444 0.543 sum 7.522 -25.783 -5.277 27.372 Atomic orbital electron populations 1.70083 1.07541 1.27538 1.51657 1.25863 0.95683 1.02905 0.95037 0.85631 0.78359 0.78822 0.78982 1.19155 1.20988 1.19731 1.21711 0.93359 0.92789 1.50446 0.92653 1.18834 0.93889 0.91198 0.95950 1.21421 0.97787 0.92029 1.00981 1.21664 0.93524 0.91536 0.95924 0.86573 1.58970 1.27127 1.45380 1.03183 1.22668 0.81568 0.85403 0.82598 1.90645 1.60701 1.54249 1.37796 1.43685 1.47546 1.27767 1.11865 1.18154 0.91715 0.89309 0.96372 1.21186 1.02096 0.95277 0.97736 1.21134 0.93506 0.95769 0.98849 1.19772 0.99760 0.97678 0.95171 1.19904 0.93345 0.80571 0.99816 1.45070 1.20766 1.06074 1.66818 1.16207 0.83772 0.81701 0.78661 1.42820 1.21894 1.09612 1.67501 1.90948 1.20989 1.85993 1.55070 1.21051 0.97846 0.93786 0.97504 1.21241 0.96058 0.99542 0.99674 0.92956 0.98501 0.97490 0.93814 0.91257 0.83856 0.83987 0.73485 0.83063 0.82963 0.90528 0.91569 0.75409 0.75592 0.74698 0.84992 0.86727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.57 13.29 21.44 0.28 -55.29 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.96 43.77 29.54 68.60 2.03 45.79 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.54 -30.21 9.11 25.60 0.23 -29.97 16 8 H 0.06 2.95 7.74 -2.91 -0.02 2.93 16 9 C 0.04 1.92 4.86 29.85 0.15 2.07 16 10 C -0.08 -3.16 4.78 30.60 0.15 -3.01 16 11 C 0.09 2.68 3.15 44.17 0.14 2.82 16 12 H 0.12 3.14 8.14 -2.38 -0.02 3.12 16 13 N -0.82 -25.47 8.44 -171.81 -1.45 -26.92 16 14 C 0.49 13.55 6.91 87.66 0.61 14.16 16 15 O -0.56 -18.17 13.69 -3.03 -0.04 -18.21 16 16 N -0.66 -14.35 5.34 -303.50 -1.62 -15.97 16 17 C 0.14 2.95 6.30 38.15 0.24 3.19 16 18 C -0.14 -2.16 9.97 22.39 0.22 -1.94 16 19 C -0.07 -0.95 9.69 22.25 0.22 -0.73 16 20 C -0.12 -1.80 5.25 -19.84 -0.10 -1.90 16 21 C 0.19 2.70 5.79 85.64 0.50 3.20 16 22 N -0.73 -9.14 5.55 -482.29 -2.68 -11.82 16 23 C 0.70 11.68 8.84 179.05 1.58 13.26 16 24 N -0.85 -6.59 8.88 -184.74 -1.64 -8.23 16 25 O -0.65 -17.48 17.18 -4.00 -0.07 -17.55 16 26 C -0.08 -1.53 9.69 22.25 0.22 -1.31 16 27 C -0.14 -3.42 8.70 22.39 0.19 -3.23 16 28 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 29 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 30 H 0.01 0.37 7.75 -2.39 -0.02 0.35 16 31 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.35 9.15 9.06 -89.69 -0.81 8.33 16 34 H 0.35 11.08 8.58 -89.69 -0.77 10.31 16 35 H 0.43 7.07 8.82 -92.71 -0.82 6.25 16 36 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 37 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16 38 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 39 H 0.07 1.10 8.08 -2.38 -0.02 1.08 16 40 H 0.41 3.32 8.48 -92.71 -0.79 2.53 16 41 H 0.41 0.60 8.84 -92.71 -0.82 -0.22 16 42 H 0.42 2.63 8.93 -92.71 -0.83 1.80 16 43 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 44 H 0.11 3.32 6.23 -2.91 -0.02 3.30 16 Total: -1.00 -77.53 377.38 -4.12 -81.65 By element: Atomic # 1 Polarization: 33.04 SS G_CDS: -3.73 Total: 29.31 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 4.80 Total: -2.77 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -7.10 Total: -118.22 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -0.11 Total: -35.76 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -77.53 -4.12 -81.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327855348.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.235 kcal (2) G-P(sol) polarization free energy of solvation -77.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds