Wall clock time and date at job start Tue Mar 31 2020 12:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99969 * 2 1 4 4 H 1.48504 * 109.47186 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47231 * 299.99827 * 3 2 1 6 6 H 1.48502 * 109.46990 * 60.00099 * 3 2 1 7 7 C 1.37872 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00280 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00038 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47407 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47308 * 179.97438 * 10 9 7 12 12 S 1.81401 * 109.47446 * 179.97438 * 11 10 9 13 13 O 1.42110 * 110.54070 * 68.37621 * 12 11 10 14 14 O 1.42095 * 110.54411 * 291.62848 * 12 11 10 15 15 N 1.65598 * 104.45377 * 179.97438 * 12 11 10 16 16 C 1.46504 * 119.99398 * 64.99846 * 15 12 11 17 17 C 1.53006 * 109.46883 * 164.99895 * 16 15 12 18 18 N 1.46898 * 109.47006 * 180.02562 * 17 16 15 19 19 C 1.46846 * 111.00018 * 294.20961 * 18 17 16 20 20 C 1.53033 * 109.52460 * 174.16134 * 19 18 17 21 21 C 1.53124 * 109.27811 * 59.18358 * 20 19 18 22 22 O 1.42899 * 109.52483 * 182.44119 * 21 20 19 23 23 C 1.53125 * 109.15751 * 302.34732 * 21 20 19 24 24 C 1.46851 * 110.99682 * 170.00115 * 18 17 16 25 25 H 0.97000 * 119.99604 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47338 * 59.99958 * 9 7 2 27 27 H 1.09007 * 109.46580 * 299.99721 * 9 7 2 28 28 H 1.09002 * 109.47175 * 59.99582 * 10 9 7 29 29 H 1.08998 * 109.47330 * 299.99949 * 10 9 7 30 30 H 1.09002 * 109.47172 * 59.99791 * 11 10 9 31 31 H 1.09010 * 109.47293 * 299.99655 * 11 10 9 32 32 H 0.96998 * 120.00439 * 245.00084 * 15 12 11 33 33 H 1.09001 * 109.46891 * 45.00329 * 16 15 12 34 34 H 1.08993 * 109.47378 * 284.99701 * 16 15 12 35 35 H 1.09001 * 109.46801 * 300.00349 * 17 16 15 36 36 H 1.09001 * 109.46998 * 59.99945 * 17 16 15 37 37 H 1.09002 * 109.46555 * 294.18280 * 19 18 17 38 38 H 1.09001 * 109.46296 * 54.14881 * 19 18 17 39 39 H 1.08997 * 109.50475 * 299.23909 * 20 19 18 40 40 H 1.09002 * 109.50799 * 179.12007 * 20 19 18 41 41 H 1.08998 * 109.57589 * 62.27874 * 21 20 19 42 42 H 0.96693 * 113.99955 * 299.68250 * 22 21 20 43 43 H 1.09005 * 109.50073 * 297.71107 * 23 21 20 44 44 H 1.08991 * 109.50379 * 177.59621 * 23 21 20 45 45 H 1.08989 * 109.46428 * 305.85572 * 24 18 17 46 46 H 1.09002 * 109.45912 * 65.83533 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4804 -4.9870 -0.0020 12 16 2.6591 -6.3659 -0.0025 13 8 3.3558 -6.4267 1.2346 14 8 3.3560 -6.4258 -1.2394 15 7 1.7088 -7.7221 -0.0023 16 6 0.8490 -8.0140 -1.1520 17 6 0.3756 -9.4671 -1.0788 18 7 -0.4860 -9.7601 -2.2319 19 6 -1.7281 -8.9790 -2.1726 20 6 -2.5320 -9.1984 -3.4562 21 6 -2.8509 -10.6887 -3.6046 22 8 -3.5524 -10.9073 -4.8302 23 6 -1.5424 -11.4839 -3.6150 24 6 -0.7672 -11.1983 -2.3268 25 1 -0.4849 0.8401 -0.0004 26 1 0.6248 -2.5563 -0.8919 27 1 0.6241 -2.5574 0.8881 28 1 2.8714 -3.6047 0.8890 29 1 2.8727 -3.6040 -0.8909 30 1 0.8541 -5.0447 -0.8922 31 1 0.8533 -5.0450 0.8878 32 1 1.7214 -8.3231 0.7589 33 1 1.4104 -7.8608 -2.0737 34 1 -0.0147 -7.3494 -1.1379 35 1 1.2394 -10.1318 -1.0929 36 1 -0.1857 -9.6204 -0.1571 37 1 -2.3188 -9.3005 -1.3148 38 1 -1.4872 -7.9208 -2.0714 39 1 -1.9473 -8.8642 -4.3133 40 1 -3.4612 -8.6308 -3.4053 41 1 -3.4688 -11.0149 -2.7680 42 1 -4.3925 -10.4327 -4.8925 43 1 -0.9422 -11.1858 -4.4746 44 1 -1.7645 -12.5492 -3.6774 45 1 0.1716 -11.7519 -2.3375 46 1 -1.3625 -11.5093 -1.4683 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327909121.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:13 Heat of formation + Delta-G solvation = -140.309153 kcal Electronic energy + Delta-G solvation = -24967.187237 eV Core-core repulsion = 21211.056723 eV Total energy + Delta-G solvation = -3756.130514 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.80778 -37.29444 -36.86958 -35.78339 -35.37430 -34.68303 -32.28929 -32.19896 -31.36281 -27.97838 -27.81826 -24.30100 -23.74552 -23.60658 -21.89975 -20.68059 -20.28526 -19.23022 -17.75055 -17.51351 -16.77386 -16.62000 -16.06698 -15.87922 -15.62152 -15.13120 -14.97577 -14.70361 -14.51493 -14.39343 -14.10274 -13.96028 -13.26808 -12.68073 -12.62912 -12.39312 -12.33768 -12.25679 -11.95575 -11.89274 -11.79159 -11.78176 -11.64725 -11.55972 -11.35294 -11.22485 -10.94516 -10.84893 -10.77067 -10.42816 -10.23685 -9.96796 -9.69959 -9.32722 -9.08805 -8.78876 -8.42344 -6.07156 -4.09991 0.44744 2.75858 3.28670 3.36246 3.41254 3.46677 3.75800 3.93923 4.27388 4.34544 4.40241 4.41717 4.53020 4.67246 4.72183 4.79143 4.89921 5.03032 5.05612 5.12070 5.13827 5.18173 5.26593 5.29638 5.34196 5.46045 5.46742 5.58764 5.61120 5.74794 5.77373 5.87940 5.91656 6.25730 6.43605 6.58479 6.62439 6.84505 6.87391 7.23564 7.55616 7.65302 7.91129 8.31629 8.96530 9.54911 11.04145 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014596 B = 0.002485 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.831914 B =11266.286185 C =12826.497931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.030 3.970 10 C -0.106 4.106 11 C -0.608 4.608 12 S 2.603 3.397 13 O -0.964 6.964 14 O -0.960 6.960 15 N -1.126 6.126 16 C 0.115 3.885 17 C 0.051 3.949 18 N -0.537 5.537 19 C 0.050 3.950 20 C -0.150 4.150 21 C 0.103 3.897 22 O -0.568 6.568 23 C -0.110 4.110 24 C 0.060 3.940 25 H 0.261 0.739 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.413 0.587 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.043 0.957 37 H 0.037 0.963 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.378 0.622 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.114 -24.480 -3.835 25.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.008 4.008 10 C -0.146 4.146 11 C -0.740 4.740 12 S 2.699 3.301 13 O -0.954 6.954 14 O -0.950 6.950 15 N -0.884 5.884 16 C -0.012 4.012 17 C -0.078 4.078 18 N -0.263 5.263 19 C -0.078 4.078 20 C -0.188 4.188 21 C 0.044 3.956 22 O -0.373 6.373 23 C -0.148 4.148 24 C -0.068 4.068 25 H 0.070 0.930 26 H 0.039 0.961 27 H 0.038 0.962 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.247 0.753 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.225 0.775 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.102 0.898 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.533 -24.518 -4.549 25.543 hybrid contribution -1.366 1.065 1.253 2.138 sum -6.899 -23.453 -3.296 24.668 Atomic orbital electron populations 1.69967 1.06097 1.26665 1.50750 1.25022 0.94893 0.99402 0.95109 0.86497 0.80204 0.83489 0.77612 1.19589 1.20929 1.20959 1.21294 0.93309 0.90873 1.50860 0.92295 1.19068 0.93543 0.90502 0.97699 1.21501 0.99390 0.91635 1.02023 1.30539 1.16396 1.15938 1.11151 1.05242 0.75530 0.75145 0.74190 1.93581 1.70675 1.85897 1.45233 1.93573 1.70148 1.85648 1.45614 1.55684 1.62507 1.42664 1.27529 1.21282 0.94270 0.96435 0.89175 1.22218 0.97299 0.96656 0.91625 1.61833 1.16267 1.06546 1.41608 1.22172 0.89705 0.99281 0.96627 1.22335 1.00477 0.96777 0.99260 1.21868 0.93177 0.94377 0.86175 1.86515 1.38213 1.73559 1.39061 1.21540 0.94674 0.99895 0.98719 1.22047 1.00041 0.88123 0.96580 0.92962 0.96118 0.96157 0.91557 0.91503 0.85552 0.85346 0.75341 0.89039 0.91680 0.89635 0.93923 0.94499 0.89513 0.89806 0.91057 0.93161 0.77469 0.90005 0.90805 0.89795 0.94604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 9 C 0.03 0.76 4.97 -27.88 -0.14 0.62 16 10 C -0.11 -2.12 5.16 -26.73 -0.14 -2.26 16 11 C -0.61 -9.06 6.07 37.15 0.23 -8.84 16 12 S 2.60 36.94 5.46 -107.50 -0.59 36.35 16 13 O -0.96 -16.52 18.08 -57.54 -1.04 -17.56 16 14 O -0.96 -16.66 17.50 -57.54 -1.01 -17.66 16 15 N -1.13 -11.24 5.89 -10.61 -0.06 -11.30 16 16 C 0.12 1.05 6.06 -4.04 -0.02 1.02 16 17 C 0.05 0.38 5.10 -3.82 -0.02 0.36 16 18 N -0.54 -4.17 4.66 -234.67 -1.09 -5.26 16 19 C 0.05 0.36 5.29 -3.84 -0.02 0.34 16 20 C -0.15 -1.03 5.72 -26.65 -0.15 -1.19 16 21 C 0.10 0.71 3.54 -26.60 -0.09 0.62 16 22 O -0.57 -4.36 13.32 -35.23 -0.47 -4.83 16 23 C -0.11 -0.78 5.75 -26.65 -0.15 -0.94 16 24 C 0.06 0.39 5.46 -3.83 -0.02 0.37 16 25 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.13 1.66 8.14 -51.92 -0.42 1.24 16 31 H 0.13 1.70 8.14 -51.92 -0.42 1.28 16 32 H 0.41 3.28 8.62 -34.47 -0.30 2.99 16 33 H 0.09 0.95 7.70 -51.93 -0.40 0.55 16 34 H 0.07 0.52 6.43 -51.93 -0.33 0.19 16 35 H 0.09 0.61 7.99 -51.93 -0.41 0.19 16 36 H 0.04 0.28 8.12 -51.93 -0.42 -0.14 16 37 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.09 0.63 6.21 -51.93 -0.32 0.31 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.38 1.40 9.09 45.56 0.41 1.82 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.50 8.01 -51.94 -0.42 0.08 16 46 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 LS Contribution 380.80 15.07 5.74 5.74 Total: -1.00 -36.18 380.80 -10.98 -47.16 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -7.23 Total: -0.02 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: -0.95 Total: -23.41 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: -0.42 Total: -42.28 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: -2.52 Total: -40.05 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 36.94 SS G_CDS: -0.59 Total: 36.35 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.18 -10.98 -47.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327909121.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.147 kcal (2) G-P(sol) polarization free energy of solvation -36.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds