Wall clock time and date at job start Tue Mar 31 2020 12:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99969 * 2 1 4 4 H 1.48504 * 109.47186 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47231 * 299.99827 * 3 2 1 6 6 H 1.48502 * 109.46990 * 60.00099 * 3 2 1 7 7 C 1.37872 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00280 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00038 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47407 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47308 * 179.97438 * 10 9 7 12 12 S 1.81401 * 109.47446 * 179.97438 * 11 10 9 13 13 O 1.42110 * 110.54070 * 68.37621 * 12 11 10 14 14 O 1.42095 * 110.54411 * 291.62848 * 12 11 10 15 15 N 1.65598 * 104.45377 * 179.97438 * 12 11 10 16 16 C 1.46504 * 119.99398 * 64.99846 * 15 12 11 17 17 C 1.53006 * 109.46883 * 164.99895 * 16 15 12 18 18 N 1.46898 * 109.47006 * 180.02562 * 17 16 15 19 19 C 1.46846 * 111.00018 * 294.20961 * 18 17 16 20 20 C 1.53033 * 109.52460 * 174.16134 * 19 18 17 21 21 C 1.53124 * 109.27811 * 59.18358 * 20 19 18 22 22 O 1.42899 * 109.52483 * 182.44119 * 21 20 19 23 23 C 1.53125 * 109.15751 * 302.34732 * 21 20 19 24 24 C 1.46851 * 110.99682 * 170.00115 * 18 17 16 25 25 H 0.97000 * 119.99604 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47338 * 59.99958 * 9 7 2 27 27 H 1.09007 * 109.46580 * 299.99721 * 9 7 2 28 28 H 1.09002 * 109.47175 * 59.99582 * 10 9 7 29 29 H 1.08998 * 109.47330 * 299.99949 * 10 9 7 30 30 H 1.09002 * 109.47172 * 59.99791 * 11 10 9 31 31 H 1.09010 * 109.47293 * 299.99655 * 11 10 9 32 32 H 0.96998 * 120.00439 * 245.00084 * 15 12 11 33 33 H 1.09001 * 109.46891 * 45.00329 * 16 15 12 34 34 H 1.08993 * 109.47378 * 284.99701 * 16 15 12 35 35 H 1.09001 * 109.46801 * 300.00349 * 17 16 15 36 36 H 1.09001 * 109.46998 * 59.99945 * 17 16 15 37 37 H 1.09002 * 109.46555 * 294.18280 * 19 18 17 38 38 H 1.09001 * 109.46296 * 54.14881 * 19 18 17 39 39 H 1.08997 * 109.50475 * 299.23909 * 20 19 18 40 40 H 1.09002 * 109.50799 * 179.12007 * 20 19 18 41 41 H 1.08998 * 109.57589 * 62.27874 * 21 20 19 42 42 H 0.96693 * 113.99955 * 299.68250 * 22 21 20 43 43 H 1.09005 * 109.50073 * 297.71107 * 23 21 20 44 44 H 1.08991 * 109.50379 * 177.59621 * 23 21 20 45 45 H 1.08989 * 109.46428 * 305.85572 * 24 18 17 46 46 H 1.09002 * 109.45912 * 65.83533 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 6 1.4804 -4.9870 -0.0020 12 16 2.6591 -6.3659 -0.0025 13 8 3.3558 -6.4267 1.2346 14 8 3.3560 -6.4258 -1.2394 15 7 1.7088 -7.7221 -0.0023 16 6 0.8490 -8.0140 -1.1520 17 6 0.3756 -9.4671 -1.0788 18 7 -0.4860 -9.7601 -2.2319 19 6 -1.7281 -8.9790 -2.1726 20 6 -2.5320 -9.1984 -3.4562 21 6 -2.8509 -10.6887 -3.6046 22 8 -3.5524 -10.9073 -4.8302 23 6 -1.5424 -11.4839 -3.6150 24 6 -0.7672 -11.1983 -2.3268 25 1 -0.4849 0.8401 -0.0004 26 1 0.6248 -2.5563 -0.8919 27 1 0.6241 -2.5574 0.8881 28 1 2.8714 -3.6047 0.8890 29 1 2.8727 -3.6040 -0.8909 30 1 0.8541 -5.0447 -0.8922 31 1 0.8533 -5.0450 0.8878 32 1 1.7214 -8.3231 0.7589 33 1 1.4104 -7.8608 -2.0737 34 1 -0.0147 -7.3494 -1.1379 35 1 1.2394 -10.1318 -1.0929 36 1 -0.1857 -9.6204 -0.1571 37 1 -2.3188 -9.3005 -1.3148 38 1 -1.4872 -7.9208 -2.0714 39 1 -1.9473 -8.8642 -4.3133 40 1 -3.4612 -8.6308 -3.4053 41 1 -3.4688 -11.0149 -2.7680 42 1 -4.3925 -10.4327 -4.8925 43 1 -0.9422 -11.1858 -4.4746 44 1 -1.7645 -12.5492 -3.6774 45 1 0.1716 -11.7519 -2.3375 46 1 -1.3625 -11.5093 -1.4683 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327909121.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:13 Heat of formation + Delta-G solvation = -170.825159 kcal Electronic energy + Delta-G solvation = -24968.510510 eV Core-core repulsion = 21211.056723 eV Total energy + Delta-G solvation = -3757.453788 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.160 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.34969 -38.22114 -37.81629 -37.05113 -36.46061 -36.13957 -34.16015 -32.90978 -31.88631 -29.65143 -28.65061 -25.62412 -24.89677 -24.14686 -22.58597 -22.34998 -20.83771 -20.33970 -18.73434 -18.50384 -18.24799 -17.59522 -17.19259 -16.85603 -16.50186 -16.42838 -16.05596 -15.72407 -15.48270 -15.19031 -14.99386 -14.59557 -14.49284 -14.07155 -13.84186 -13.52214 -13.33532 -13.21553 -13.17646 -13.11434 -12.99831 -12.89433 -12.77435 -12.60071 -12.50724 -12.21597 -12.15816 -12.13613 -11.97804 -11.74384 -11.36727 -11.28923 -11.09988 -10.77003 -10.57982 -10.31771 -9.31686 -8.23073 -6.33638 -0.73140 1.39451 1.40375 1.53450 1.75796 2.39695 2.75577 2.90122 3.10678 3.26062 3.30553 3.72645 3.76783 3.82424 3.90179 3.96447 4.10548 4.17836 4.24381 4.37503 4.40458 4.48801 4.52272 4.56271 4.61742 4.67703 4.82502 4.87275 4.94058 4.96330 4.98803 5.04370 5.07171 5.12298 5.19082 5.36223 5.45958 5.63557 5.79763 6.03118 6.09769 6.14705 6.20029 6.82236 6.88021 7.35739 8.88594 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014596 B = 0.002485 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.831914 B =11266.286185 C =12826.497931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.551 4.551 8 H 0.059 0.941 9 C 0.031 3.969 10 C -0.107 4.107 11 C -0.609 4.609 12 S 2.635 3.365 13 O -0.992 6.992 14 O -0.991 6.991 15 N -1.107 6.107 16 C 0.108 3.892 17 C 0.055 3.945 18 N -0.552 5.552 19 C 0.047 3.953 20 C -0.147 4.147 21 C 0.103 3.897 22 O -0.587 6.587 23 C -0.111 4.111 24 C 0.063 3.937 25 H 0.265 0.735 26 H 0.004 0.996 27 H 0.003 0.997 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.426 0.574 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.062 0.938 42 H 0.393 0.607 43 H 0.062 0.938 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.431 -25.274 -3.333 26.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.589 4.589 8 H 0.078 0.922 9 C -0.008 4.008 10 C -0.147 4.147 11 C -0.740 4.740 12 S 2.730 3.270 13 O -0.982 6.982 14 O -0.981 6.981 15 N -0.870 5.870 16 C -0.019 4.019 17 C -0.074 4.074 18 N -0.277 5.277 19 C -0.080 4.080 20 C -0.185 4.185 21 C 0.044 3.956 22 O -0.396 6.396 23 C -0.149 4.149 24 C -0.065 4.065 25 H 0.074 0.926 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.163 0.837 31 H 0.166 0.834 32 H 0.263 0.737 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.243 0.757 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.107 0.893 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.855 -25.313 -4.039 26.294 hybrid contribution -1.335 1.250 1.060 2.114 sum -7.190 -24.063 -2.979 25.290 Atomic orbital electron populations 1.70072 1.07583 1.27806 1.51502 1.25922 0.95821 1.03193 0.94628 0.85438 0.79067 0.78908 0.77903 1.18849 1.20222 1.20229 1.21774 0.93730 0.92556 1.50843 0.92233 1.18968 0.94031 0.91814 0.95952 1.21314 0.98697 0.92560 1.02085 1.30494 1.16685 1.13647 1.13134 1.04069 0.75024 0.75230 0.72722 1.93539 1.71818 1.86475 1.46353 1.93537 1.71309 1.86257 1.46981 1.55197 1.62126 1.41179 1.28459 1.21453 0.94230 0.98234 0.87944 1.22166 0.97667 0.95304 0.92255 1.61802 1.16678 1.07293 1.41972 1.22207 0.89700 0.99134 0.96987 1.22296 1.00730 0.97021 0.98450 1.21898 0.93172 0.94237 0.86278 1.86477 1.39381 1.74127 1.39569 1.21543 0.94727 1.00262 0.98364 1.22047 1.00428 0.87495 0.96531 0.92642 0.97796 0.97826 0.91553 0.91582 0.83747 0.83442 0.73690 0.90480 0.90244 0.89244 0.92337 0.93499 0.89770 0.91723 0.89791 0.92013 0.75691 0.91879 0.90287 0.89259 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.37 13.29 21.45 0.28 -55.09 16 2 C 0.00 0.14 5.46 84.65 0.46 0.61 16 3 Si 0.96 44.09 29.54 68.60 2.03 46.11 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 7 C -0.55 -31.22 9.11 25.60 0.23 -30.98 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.56 4.97 29.85 0.15 1.71 16 10 C -0.11 -4.29 5.16 30.59 0.16 -4.13 16 11 C -0.61 -17.42 6.07 71.98 0.44 -16.99 16 12 S 2.63 71.57 5.46 -56.49 -0.31 71.26 16 13 O -0.99 -32.88 18.08 -127.65 -2.31 -35.19 16 14 O -0.99 -33.69 17.50 -127.65 -2.23 -35.93 16 15 N -1.11 -19.80 5.89 -187.48 -1.10 -20.90 16 16 C 0.11 1.75 6.06 86.38 0.52 2.27 16 17 C 0.06 0.69 5.10 86.31 0.44 1.13 16 18 N -0.55 -7.63 4.66 -896.37 -4.17 -11.80 16 19 C 0.05 0.60 5.29 86.32 0.46 1.06 16 20 C -0.15 -1.86 5.72 30.65 0.18 -1.68 16 21 C 0.10 1.30 3.54 30.68 0.11 1.40 16 22 O -0.59 -8.49 13.32 -148.98 -1.99 -10.47 16 23 C -0.11 -1.47 5.75 30.65 0.18 -1.30 16 24 C 0.06 0.71 5.46 86.32 0.47 1.18 16 25 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 26 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 27 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 28 H 0.07 2.60 8.14 -2.39 -0.02 2.59 16 29 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.14 3.59 8.14 -2.39 -0.02 3.57 16 31 H 0.15 3.65 8.14 -2.38 -0.02 3.63 16 32 H 0.43 5.67 8.62 -96.75 -0.83 4.84 16 33 H 0.08 1.52 7.70 -2.39 -0.02 1.50 16 34 H 0.08 1.09 6.43 -2.39 -0.02 1.07 16 35 H 0.09 1.06 7.99 -2.39 -0.02 1.04 16 36 H 0.06 0.57 8.12 -2.39 -0.02 0.55 16 37 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.08 1.09 6.21 -2.39 -0.01 1.07 16 39 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.39 2.50 9.09 -74.06 -0.67 1.83 16 43 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 44 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.09 0.91 8.01 -2.39 -0.02 0.89 16 46 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 Total: -1.00 -77.29 380.80 -6.55 -83.84 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -0.54 Total: 13.87 kcal Atomic # 6 Polarization: -49.51 SS G_CDS: 3.79 Total: -45.72 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -4.99 Total: -87.79 kcal Atomic # 8 Polarization: -75.06 SS G_CDS: -6.53 Total: -81.58 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 71.57 SS G_CDS: -0.31 Total: 71.26 kcal Total: -77.29 -6.55 -83.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327909121.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.982 kcal (2) G-P(sol) polarization free energy of solvation -77.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds