Wall clock time and date at job start Tue Mar 31 2020 12:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48500 * 109.46926 * 270.00119 * 3 2 1 5 5 H 1.48499 * 109.47153 * 29.99872 * 3 2 1 6 6 H 1.48497 * 109.47049 * 149.99909 * 3 2 1 7 7 C 1.37880 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00189 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99650 * 179.97438 * 7 2 1 10 10 H 1.08994 * 109.49609 * 60.07348 * 9 7 2 11 11 C 1.53044 * 109.52255 * 180.14919 * 9 7 2 12 12 C 1.53039 * 109.54056 * 181.33385 * 11 9 7 13 13 C 1.53627 * 109.24201 * 298.51420 * 12 11 9 14 14 N 1.46926 * 108.54439 * 54.85213 * 13 12 11 15 15 C 1.34776 * 120.62931 * 126.36838 * 14 13 12 16 16 O 1.21353 * 119.99813 * 188.42795 * 15 14 13 17 17 C 1.49449 * 120.00095 * 8.42716 * 15 14 13 18 18 O 1.21343 * 119.99975 * 6.74382 * 17 15 14 19 19 N 1.34773 * 119.99855 * 186.74586 * 17 15 14 20 20 C 1.46501 * 119.99793 * 180.02562 * 19 17 15 21 21 C 1.53000 * 109.47151 * 179.97438 * 20 19 17 22 22 N 1.46501 * 109.47151 * 179.97438 * 21 20 19 23 23 C 1.36879 * 126.39683 * 270.31989 * 22 21 20 24 24 C 1.34674 * 106.81598 * 180.12113 * 23 22 21 25 25 N 1.34125 * 108.01931 * 359.58667 * 24 23 22 26 26 C 1.30499 * 109.25932 * 0.26304 * 25 24 23 27 27 C 1.46925 * 118.73937 * 306.09705 * 14 13 12 28 28 H 0.97004 * 120.00247 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46194 * 301.35738 * 11 9 7 30 30 H 1.09007 * 109.45553 * 61.32896 * 11 9 7 31 31 H 1.09000 * 109.49450 * 58.58794 * 12 11 9 32 32 H 1.08995 * 109.50180 * 178.68246 * 12 11 9 33 33 H 1.08998 * 109.74043 * 295.11701 * 13 12 11 34 34 H 1.08999 * 109.66399 * 174.54667 * 13 12 11 35 35 H 0.96995 * 120.00595 * 359.97438 * 19 17 15 36 36 H 1.09000 * 109.47396 * 59.99764 * 20 19 17 37 37 H 1.09003 * 109.47387 * 299.99740 * 20 19 17 38 38 H 1.09003 * 109.47136 * 60.00242 * 21 20 19 39 39 H 1.08997 * 109.47306 * 300.00076 * 21 20 19 40 40 H 1.08000 * 126.59586 * 0.02562 * 23 22 21 41 41 H 1.08004 * 125.98662 * 179.85199 * 24 23 22 42 42 H 1.07997 * 125.65244 * 180.02562 * 26 25 24 43 43 H 1.09001 * 109.58816 * 173.64616 * 27 14 13 44 44 H 1.08995 * 109.58502 * 293.92785 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8756 -0.6809 0.8899 11 6 4.0229 -2.6365 -0.0030 12 6 5.5530 -2.6371 0.0299 13 6 6.0868 -1.9326 -1.2266 14 7 5.4857 -0.5941 -1.3027 15 6 6.2617 0.5013 -1.4230 16 8 5.7694 1.6067 -1.3314 17 6 7.7285 0.3546 -1.6692 18 8 8.2011 -0.7425 -1.8825 19 7 8.5262 1.4407 -1.6542 20 6 9.9639 1.2970 -1.8961 21 6 10.6330 2.6711 -1.8249 22 7 12.0708 2.5273 -2.0662 23 6 13.0348 2.3039 -1.1204 24 6 14.2121 2.2408 -1.7713 25 7 13.9724 2.4117 -3.0799 26 6 12.6919 2.5838 -3.2640 27 6 4.0224 -0.4728 -1.2513 28 1 -0.4851 0.8401 -0.0004 29 1 3.6406 -3.1592 0.8737 30 1 3.6792 -3.1418 -0.9057 31 1 5.8979 -2.1103 0.9197 32 1 5.9160 -3.6646 0.0514 33 1 5.8158 -2.5057 -2.1132 34 1 7.1713 -1.8431 -1.1641 35 1 8.1484 2.3177 -1.4840 36 1 10.1249 0.8657 -2.8841 37 1 10.3961 0.6424 -1.1392 38 1 10.4722 3.1028 -0.8370 39 1 10.2008 3.3253 -2.5820 40 1 12.8810 2.1999 -0.0565 41 1 15.1792 2.0768 -1.3193 42 1 12.2090 2.7444 -4.2165 43 1 3.7443 0.5801 -1.2051 44 1 3.5866 -0.9271 -2.1410 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330822258.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:26 Heat of formation + Delta-G solvation = 16.402068 kcal Electronic energy + Delta-G solvation = -26743.805173 eV Core-core repulsion = 22891.318967 eV Total energy + Delta-G solvation = -3852.486206 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.44258 -40.89487 -38.82415 -37.26448 -36.36494 -34.02814 -33.29902 -32.01464 -30.58523 -30.02653 -29.36388 -26.31291 -25.23051 -24.35550 -22.49767 -22.03976 -21.74633 -21.42055 -20.41641 -19.19480 -17.97337 -17.53289 -16.93395 -16.77521 -16.33431 -16.10406 -15.54898 -15.28550 -14.75186 -14.49710 -14.36534 -14.27579 -14.16637 -13.72610 -13.70713 -13.53947 -13.19770 -12.89748 -12.84978 -12.63507 -12.28207 -12.23152 -11.81856 -11.14581 -10.99342 -10.61557 -10.45328 -10.38288 -10.20544 -10.11722 -9.83071 -9.69992 -9.54764 -9.21241 -8.95046 -8.92055 -8.68830 -8.25471 -6.16768 -4.18575 1.39076 1.58784 1.95791 2.58226 2.81455 3.20819 3.29134 3.37585 3.47816 3.57122 3.97091 3.98569 4.31070 4.34709 4.34816 4.47558 4.53288 4.90399 5.07556 5.14368 5.16969 5.30722 5.30923 5.39583 5.54243 5.70664 5.80881 5.93544 6.03186 6.05755 6.22061 6.32791 6.36911 6.39735 6.50130 6.66614 6.70517 6.71858 6.80197 7.06838 7.34677 7.48281 7.62318 7.67545 7.68013 8.08254 8.42357 8.86787 9.44020 10.95133 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024467 B = 0.002668 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.103343 B =10493.973618 C =11287.380380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.880 3.120 4 H -0.274 1.274 5 H -0.295 1.295 6 H -0.262 1.262 7 C -0.516 4.516 8 H 0.079 0.921 9 C 0.006 3.994 10 H 0.032 0.968 11 C -0.103 4.103 12 C -0.136 4.136 13 C 0.071 3.929 14 N -0.568 5.568 15 C 0.496 3.504 16 O -0.530 6.530 17 C 0.516 3.484 18 O -0.507 6.507 19 N -0.706 5.706 20 C 0.104 3.896 21 C 0.094 3.906 22 N -0.458 5.458 23 C -0.054 4.054 24 C -0.029 4.029 25 N -0.495 5.495 26 C 0.185 3.815 27 C 0.097 3.903 28 H 0.266 0.734 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.129 0.871 35 H 0.415 0.585 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.175 0.825 41 H 0.170 0.830 42 H 0.206 0.794 43 H 0.080 0.920 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.207 3.872 -3.007 23.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.131 4.131 3 Si 0.709 3.291 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.186 1.186 7 C -0.554 4.554 8 H 0.097 0.903 9 C -0.013 4.013 10 H 0.050 0.950 11 C -0.141 4.141 12 C -0.174 4.174 13 C -0.050 4.050 14 N -0.300 5.300 15 C 0.277 3.723 16 O -0.408 6.408 17 C 0.298 3.702 18 O -0.383 6.383 19 N -0.361 5.361 20 C -0.020 4.020 21 C -0.030 4.030 22 N -0.142 5.142 23 C -0.187 4.187 24 C -0.176 4.176 25 N -0.212 5.212 26 C -0.098 4.098 27 C -0.023 4.023 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.146 0.854 35 H 0.252 0.748 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.193 0.807 41 H 0.187 0.813 42 H 0.222 0.778 43 H 0.098 0.902 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 23.559 3.773 -3.703 24.144 hybrid contribution -0.575 1.331 0.674 1.599 sum 22.984 5.105 -3.028 23.738 Atomic orbital electron populations 1.69888 1.06258 1.27186 1.49787 1.25071 0.94792 0.99128 0.94131 0.86980 0.79802 0.83476 0.78827 1.20074 1.22209 1.18642 1.20956 0.88068 0.94708 1.51675 0.90330 1.19481 0.96910 0.92371 0.92569 0.95040 1.21479 0.92362 0.98579 1.01645 1.22077 0.98176 0.99743 0.97420 1.22880 1.01870 0.81783 0.98508 1.48394 1.08355 1.06257 1.66976 1.19837 0.86714 0.85595 0.80165 1.90759 1.74571 1.25046 1.50423 1.20540 0.88144 0.84248 0.77280 1.90516 1.76085 1.24613 1.47101 1.45572 1.07324 1.11227 1.71943 1.21697 0.79979 0.96645 1.03706 1.21987 0.77862 0.97754 1.05370 1.45392 1.07099 1.53577 1.08104 1.22815 0.88849 1.10900 0.96101 1.22350 0.98131 1.07342 0.89819 1.70321 1.13927 1.18871 1.18117 1.25112 0.89016 1.05279 0.90357 1.22866 0.74669 1.02804 1.01925 0.92454 0.92145 0.92417 0.92250 0.91442 0.91408 0.85422 0.74813 0.90034 0.90072 0.87892 0.87649 0.80737 0.81251 0.77790 0.90195 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.83 13.96 55.43 0.77 -26.06 16 2 C 0.07 2.03 5.45 -17.82 -0.10 1.94 16 3 Si 0.88 22.32 24.32 -169.99 -4.13 18.19 16 4 H -0.27 -6.93 6.92 56.52 0.39 -6.54 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 6 H -0.26 -6.59 6.53 56.52 0.37 -6.22 16 7 C -0.52 -14.00 9.15 -34.44 -0.32 -14.31 16 8 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 9 C 0.01 0.14 1.84 -91.65 -0.17 -0.03 16 10 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 11 C -0.10 -1.93 5.11 -26.69 -0.14 -2.06 16 12 C -0.14 -2.09 6.10 -26.39 -0.16 -2.25 16 13 C 0.07 1.10 6.01 -3.48 -0.02 1.08 16 14 N -0.57 -10.44 2.97 -173.01 -0.51 -10.96 16 15 C 0.50 8.61 7.73 -11.59 -0.09 8.52 16 16 O -0.53 -10.48 15.93 5.49 0.09 -10.40 16 17 C 0.52 6.97 7.74 -11.59 -0.09 6.88 16 18 O -0.51 -7.37 13.18 5.50 0.07 -7.29 16 19 N -0.71 -6.57 5.55 -60.73 -0.34 -6.91 16 20 C 0.10 0.72 6.00 -4.04 -0.02 0.69 16 21 C 0.09 0.41 6.26 -4.04 -0.03 0.39 16 22 N -0.46 -3.00 2.75 -118.58 -0.33 -3.33 16 23 C -0.05 -0.38 11.58 -16.56 -0.19 -0.57 16 24 C -0.03 -0.25 11.87 -17.81 -0.21 -0.46 16 25 N -0.49 -5.18 11.25 -14.66 -0.16 -5.35 16 26 C 0.18 1.44 12.56 -90.37 -1.14 0.31 16 27 C 0.10 2.11 5.12 -3.71 -0.02 2.09 16 28 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.13 1.89 4.30 -54.84 -0.24 1.65 16 35 H 0.42 3.36 7.96 -40.82 -0.33 3.03 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.18 0.76 8.06 -52.49 -0.42 0.33 16 41 H 0.17 1.10 8.06 -52.48 -0.42 0.68 16 42 H 0.21 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.08 1.91 2.32 -51.93 -0.12 1.79 16 44 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 LS Contribution 356.65 15.07 5.37 5.37 Total: -1.00 -34.70 356.65 -8.00 -42.70 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.15 Total: 1.81 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -2.69 Total: 2.21 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -0.57 Total: -52.60 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: 0.16 Total: -17.69 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.13 Total: 18.19 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.70 -8.00 -42.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330822258.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.103 kcal (2) G-P(sol) polarization free energy of solvation -34.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds