Wall clock time and date at job start Tue Mar 31 2020 12:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48500 * 109.46926 * 270.00119 * 3 2 1 5 5 H 1.48499 * 109.47153 * 29.99872 * 3 2 1 6 6 H 1.48497 * 109.47049 * 149.99909 * 3 2 1 7 7 C 1.37880 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00189 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99650 * 179.97438 * 7 2 1 10 10 H 1.08994 * 109.49609 * 60.07348 * 9 7 2 11 11 C 1.53044 * 109.52255 * 180.14919 * 9 7 2 12 12 C 1.53039 * 109.54056 * 181.33385 * 11 9 7 13 13 C 1.53627 * 109.24201 * 298.51420 * 12 11 9 14 14 N 1.46926 * 108.54439 * 54.85213 * 13 12 11 15 15 C 1.34776 * 120.62931 * 126.36838 * 14 13 12 16 16 O 1.21353 * 119.99813 * 188.42795 * 15 14 13 17 17 C 1.49449 * 120.00095 * 8.42716 * 15 14 13 18 18 O 1.21343 * 119.99975 * 6.74382 * 17 15 14 19 19 N 1.34773 * 119.99855 * 186.74586 * 17 15 14 20 20 C 1.46501 * 119.99793 * 180.02562 * 19 17 15 21 21 C 1.53000 * 109.47151 * 179.97438 * 20 19 17 22 22 N 1.46501 * 109.47151 * 179.97438 * 21 20 19 23 23 C 1.36879 * 126.39683 * 270.31989 * 22 21 20 24 24 C 1.34674 * 106.81598 * 180.12113 * 23 22 21 25 25 N 1.34125 * 108.01931 * 359.58667 * 24 23 22 26 26 C 1.30499 * 109.25932 * 0.26304 * 25 24 23 27 27 C 1.46925 * 118.73937 * 306.09705 * 14 13 12 28 28 H 0.97004 * 120.00247 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46194 * 301.35738 * 11 9 7 30 30 H 1.09007 * 109.45553 * 61.32896 * 11 9 7 31 31 H 1.09000 * 109.49450 * 58.58794 * 12 11 9 32 32 H 1.08995 * 109.50180 * 178.68246 * 12 11 9 33 33 H 1.08998 * 109.74043 * 295.11701 * 13 12 11 34 34 H 1.08999 * 109.66399 * 174.54667 * 13 12 11 35 35 H 0.96995 * 120.00595 * 359.97438 * 19 17 15 36 36 H 1.09000 * 109.47396 * 59.99764 * 20 19 17 37 37 H 1.09003 * 109.47387 * 299.99740 * 20 19 17 38 38 H 1.09003 * 109.47136 * 60.00242 * 21 20 19 39 39 H 1.08997 * 109.47306 * 300.00076 * 21 20 19 40 40 H 1.08000 * 126.59586 * 0.02562 * 23 22 21 41 41 H 1.08004 * 125.98662 * 179.85199 * 24 23 22 42 42 H 1.07997 * 125.65244 * 180.02562 * 26 25 24 43 43 H 1.09001 * 109.58816 * 173.64616 * 27 14 13 44 44 H 1.08995 * 109.58502 * 293.92785 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8756 -0.6809 0.8899 11 6 4.0229 -2.6365 -0.0030 12 6 5.5530 -2.6371 0.0299 13 6 6.0868 -1.9326 -1.2266 14 7 5.4857 -0.5941 -1.3027 15 6 6.2617 0.5013 -1.4230 16 8 5.7694 1.6067 -1.3314 17 6 7.7285 0.3546 -1.6692 18 8 8.2011 -0.7425 -1.8825 19 7 8.5262 1.4407 -1.6542 20 6 9.9639 1.2970 -1.8961 21 6 10.6330 2.6711 -1.8249 22 7 12.0708 2.5273 -2.0662 23 6 13.0348 2.3039 -1.1204 24 6 14.2121 2.2408 -1.7713 25 7 13.9724 2.4117 -3.0799 26 6 12.6919 2.5838 -3.2640 27 6 4.0224 -0.4728 -1.2513 28 1 -0.4851 0.8401 -0.0004 29 1 3.6406 -3.1592 0.8737 30 1 3.6792 -3.1418 -0.9057 31 1 5.8979 -2.1103 0.9197 32 1 5.9160 -3.6646 0.0514 33 1 5.8158 -2.5057 -2.1132 34 1 7.1713 -1.8431 -1.1641 35 1 8.1484 2.3177 -1.4840 36 1 10.1249 0.8657 -2.8841 37 1 10.3961 0.6424 -1.1392 38 1 10.4722 3.1028 -0.8370 39 1 10.2008 3.3253 -2.5820 40 1 12.8810 2.1999 -0.0565 41 1 15.1792 2.0768 -1.3193 42 1 12.2090 2.7444 -4.2165 43 1 3.7443 0.5801 -1.2051 44 1 3.5866 -0.9271 -2.1410 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330822258.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:26 Heat of formation + Delta-G solvation = -8.003160 kcal Electronic energy + Delta-G solvation = -26744.863463 eV Core-core repulsion = 22891.318967 eV Total energy + Delta-G solvation = -3853.544496 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.96290 -42.09193 -40.04996 -38.69832 -37.14358 -35.31959 -34.56489 -33.63392 -32.27444 -30.60469 -29.98649 -27.67800 -26.94732 -25.25269 -23.65263 -23.47740 -22.28367 -22.02793 -21.54206 -20.65729 -19.09353 -18.73537 -18.46427 -17.97379 -17.31385 -17.07529 -16.48308 -16.32340 -16.11528 -15.77344 -15.50912 -15.25369 -15.06691 -14.88485 -14.78551 -14.75062 -14.39673 -14.20285 -14.06820 -13.75393 -13.39748 -13.29846 -13.05043 -12.75764 -12.52140 -12.33928 -12.13516 -11.78236 -11.62115 -11.33280 -11.08997 -10.96830 -10.81342 -10.68794 -10.54543 -10.22706 -9.75633 -9.45432 -8.38082 -6.41675 0.21339 0.95920 1.20338 1.25440 1.31786 1.41893 1.84782 1.99210 2.22335 2.23374 2.49344 2.97616 3.19368 3.53194 3.64805 3.90244 3.94332 4.04624 4.11086 4.13333 4.21531 4.37703 4.38230 4.44802 4.55591 4.62864 4.65317 4.72385 4.78584 4.80707 4.91872 5.02555 5.13984 5.21564 5.29986 5.30629 5.47449 5.57956 5.62986 5.81795 5.84940 6.21064 6.24200 6.25769 6.57601 6.67527 6.80367 7.14132 7.23837 8.77723 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024467 B = 0.002668 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.103343 B =10493.973618 C =11287.380380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.024 3.976 3 Si 0.939 3.061 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.260 1.260 7 C -0.514 4.514 8 H 0.048 0.952 9 C 0.006 3.994 10 H 0.018 0.982 11 C -0.100 4.100 12 C -0.127 4.127 13 C 0.072 3.928 14 N -0.577 5.577 15 C 0.490 3.510 16 O -0.558 6.558 17 C 0.525 3.475 18 O -0.517 6.517 19 N -0.683 5.683 20 C 0.108 3.892 21 C 0.100 3.900 22 N -0.456 5.456 23 C -0.049 4.049 24 C -0.059 4.059 25 N -0.540 5.540 26 C 0.178 3.822 27 C 0.104 3.896 28 H 0.267 0.733 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.424 0.576 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.201 0.799 41 H 0.178 0.822 42 H 0.229 0.771 43 H 0.058 0.942 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.714 4.252 -3.043 26.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.175 4.175 3 Si 0.768 3.232 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.185 1.185 7 C -0.552 4.552 8 H 0.066 0.934 9 C -0.014 4.014 10 H 0.037 0.963 11 C -0.138 4.138 12 C -0.165 4.165 13 C -0.048 4.048 14 N -0.308 5.308 15 C 0.273 3.727 16 O -0.438 6.438 17 C 0.306 3.694 18 O -0.395 6.395 19 N -0.337 5.337 20 C -0.015 4.015 21 C -0.023 4.023 22 N -0.139 5.139 23 C -0.181 4.181 24 C -0.205 4.205 25 N -0.258 5.258 26 C -0.104 4.104 27 C -0.018 4.018 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.160 0.840 35 H 0.262 0.738 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.218 0.782 41 H 0.195 0.805 42 H 0.246 0.754 43 H 0.076 0.924 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 26.113 4.162 -3.732 26.705 hybrid contribution -1.333 1.167 0.683 1.899 sum 24.780 5.329 -3.049 25.529 Atomic orbital electron populations 1.70000 1.07704 1.28011 1.52044 1.25731 0.95311 1.02119 0.94352 0.86018 0.78487 0.80088 0.78624 1.20074 1.22135 1.18504 1.21267 0.90661 0.93292 1.49992 0.93355 1.19404 0.94012 0.95310 0.92644 0.96349 1.21419 0.95159 0.95563 1.01651 1.22034 0.95074 1.01949 0.97410 1.23096 1.02434 0.80381 0.98927 1.48383 1.06999 1.07937 1.67488 1.20532 0.88543 0.84726 0.78948 1.90735 1.75655 1.26032 1.51349 1.19701 0.86454 0.85142 0.78122 1.90504 1.75556 1.25129 1.48282 1.45442 1.08061 1.10434 1.69812 1.21793 0.78067 0.98295 1.03392 1.22080 0.76405 0.96454 1.07359 1.45488 1.07788 1.52982 1.07649 1.23223 0.88366 1.09323 0.97215 1.22684 0.99496 1.08629 0.89741 1.70271 1.15702 1.20524 1.19348 1.25603 0.88651 1.04549 0.91627 1.22362 0.77470 1.00973 1.00958 0.92324 0.92425 0.92259 0.92346 0.87911 0.90371 0.83977 0.73818 0.90321 0.90349 0.85981 0.85520 0.78187 0.80466 0.75443 0.92389 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.81 13.96 21.45 0.30 -57.51 16 2 C 0.02 1.36 5.45 84.66 0.46 1.82 16 3 Si 0.94 47.16 24.32 68.60 1.67 48.82 16 4 H -0.27 -13.63 6.92 99.48 0.69 -12.94 16 5 H -0.29 -14.53 7.11 99.48 0.71 -13.83 16 6 H -0.26 -12.84 6.53 99.48 0.65 -12.19 16 7 C -0.51 -28.51 9.15 25.60 0.23 -28.27 16 8 H 0.05 2.91 7.99 -2.91 -0.02 2.89 16 9 C 0.01 0.27 1.84 -11.46 -0.02 0.25 16 10 H 0.02 0.88 7.20 -2.39 -0.02 0.87 16 11 C -0.10 -3.63 5.11 30.62 0.16 -3.48 16 12 C -0.13 -3.52 6.10 30.82 0.19 -3.33 16 13 C 0.07 2.01 6.01 86.51 0.52 2.53 16 14 N -0.58 -20.18 2.97 -819.65 -2.43 -22.61 16 15 C 0.49 16.04 7.73 87.27 0.67 16.72 16 16 O -0.56 -21.20 15.93 -3.26 -0.05 -21.25 16 17 C 0.53 12.65 7.74 87.27 0.68 13.33 16 18 O -0.52 -13.35 13.18 -3.23 -0.04 -13.39 16 19 N -0.68 -10.38 5.55 -464.42 -2.58 -12.95 16 20 C 0.11 1.09 6.00 86.38 0.52 1.61 16 21 C 0.10 0.47 6.26 86.38 0.54 1.01 16 22 N -0.46 -4.62 2.75 -529.06 -1.46 -6.08 16 23 C -0.05 -0.56 11.58 83.09 0.96 0.41 16 24 C -0.06 -0.96 11.87 83.53 0.99 0.03 16 25 N -0.54 -10.83 11.25 -200.31 -2.25 -13.09 16 26 C 0.18 2.42 12.56 180.26 2.26 4.69 16 27 C 0.10 4.45 5.12 86.36 0.44 4.90 16 28 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 29 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.14 3.70 4.30 -48.53 -0.21 3.49 16 35 H 0.42 5.35 7.96 -92.71 -0.74 4.61 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 39 H 0.13 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.20 1.06 8.06 -2.91 -0.02 1.04 16 41 H 0.18 2.23 8.06 -2.91 -0.02 2.21 16 42 H 0.23 1.58 8.06 -2.91 -0.02 1.56 16 43 H 0.06 2.75 2.32 -2.39 -0.01 2.74 16 44 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -77.24 356.65 1.78 -75.46 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.02 Total: 10.38 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 8.61 Total: 12.21 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -8.42 Total: -112.23 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -0.09 Total: -34.64 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 1.67 Total: 48.82 kcal Total: -77.24 1.78 -75.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330822258.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.454 kcal (2) G-P(sol) polarization free energy of solvation -77.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds