Wall clock time and date at job start Tue Mar 31 2020 12:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00004 * 2 1 4 4 H 1.48505 * 109.47200 * 240.00212 * 3 2 1 5 5 H 1.48507 * 109.46922 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47283 * 119.99944 * 3 2 1 7 7 C 1.37877 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00058 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99968 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.49413 * 300.06048 * 9 7 2 11 11 C 1.53042 * 109.49638 * 180.02562 * 9 7 2 12 12 C 1.53042 * 109.53782 * 178.68026 * 11 9 7 13 13 C 1.53202 * 109.31136 * 61.36132 * 12 11 9 14 14 N 1.46922 * 108.77217 * 305.36602 * 13 12 11 15 15 C 1.34782 * 120.62898 * 233.58104 * 14 13 12 16 16 O 1.21347 * 120.00368 * 187.08937 * 15 14 13 17 17 C 1.49456 * 119.99882 * 7.09352 * 15 14 13 18 18 O 1.21352 * 119.99706 * 6.39831 * 17 15 14 19 19 N 1.34771 * 120.00059 * 186.39738 * 17 15 14 20 20 C 1.46492 * 120.00139 * 179.97438 * 19 17 15 21 21 C 1.53004 * 109.47408 * 179.97438 * 20 19 17 22 22 N 1.46501 * 109.46982 * 180.02562 * 21 20 19 23 23 C 1.36879 * 126.39456 * 90.00735 * 22 21 20 24 24 C 1.34676 * 106.81490 * 179.97438 * 23 22 21 25 25 N 1.34130 * 108.01786 * 0.22704 * 24 23 22 26 26 C 1.30497 * 109.25979 * 359.61467 * 25 24 23 27 27 C 1.46920 * 118.74400 * 53.86512 * 14 13 12 28 28 H 0.97001 * 120.00301 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46534 * 58.65887 * 11 9 7 30 30 H 1.09007 * 109.44667 * 298.69194 * 11 9 7 31 31 H 1.08996 * 109.49612 * 301.41273 * 12 11 9 32 32 H 1.09000 * 109.50114 * 181.31062 * 12 11 9 33 33 H 1.08996 * 109.58576 * 185.57680 * 13 12 11 34 34 H 1.09000 * 109.70355 * 65.22282 * 13 12 11 35 35 H 0.96998 * 119.99752 * 359.97438 * 19 17 15 36 36 H 1.09003 * 109.47064 * 60.00101 * 20 19 17 37 37 H 1.08993 * 109.47601 * 300.00262 * 20 19 17 38 38 H 1.09003 * 109.46763 * 60.00115 * 21 20 19 39 39 H 1.09002 * 109.46866 * 300.00190 * 21 20 19 40 40 H 1.07994 * 126.59449 * 0.02562 * 23 22 21 41 41 H 1.07999 * 125.98970 * 179.97438 * 24 23 22 42 42 H 1.07994 * 125.65279 * 180.14604 * 26 25 24 43 43 H 1.09006 * 109.58856 * 65.91836 * 27 14 13 44 44 H 1.08996 * 109.59565 * 186.34932 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6231 -2.5566 0.8896 11 6 2.2451 -3.6628 0.0018 12 6 1.4811 -4.9885 0.0350 13 6 0.6067 -5.1008 -1.2178 14 7 -0.2518 -3.9116 -1.3034 15 6 -1.5881 -4.0368 -1.4269 16 8 -2.2737 -3.0555 -1.6256 17 6 -2.2256 -5.3842 -1.3189 18 8 -1.5579 -6.3479 -1.0054 19 7 -3.5418 -5.5291 -1.5695 20 6 -4.1665 -6.8499 -1.4642 21 6 -5.6558 -6.7378 -1.7965 22 7 -6.2806 -8.0586 -1.6906 23 6 -6.8498 -8.6003 -0.5697 24 6 -7.3002 -9.8222 -0.9132 25 7 -7.0093 -10.0230 -2.2071 26 6 -6.4031 -8.9689 -2.6806 27 6 0.3745 -2.5834 -1.2583 28 1 -0.4850 0.8400 -0.0004 29 1 2.8868 -3.5914 0.8800 30 1 2.8567 -3.6186 -0.8994 31 1 0.8503 -5.0227 0.9232 32 1 2.1898 -5.8163 0.0594 33 1 -0.0131 -5.9950 -1.1518 34 1 1.2393 -5.1594 -2.1035 35 1 -4.0755 -4.7587 -1.8196 36 1 -4.0488 -7.2276 -0.4485 37 1 -3.6883 -7.5350 -2.1641 38 1 -5.7740 -6.3599 -2.8121 39 1 -6.1338 -6.0529 -1.0961 40 1 -6.9242 -8.1367 0.4028 41 1 -7.8033 -10.5198 -0.2601 42 1 -6.0536 -8.8464 -3.6951 43 1 0.9905 -2.4394 -2.1460 44 1 -0.3984 -1.8159 -1.2189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330822260.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:29 Heat of formation + Delta-G solvation = 11.465408 kcal Electronic energy + Delta-G solvation = -26587.526488 eV Core-core repulsion = 22734.826212 eV Total energy + Delta-G solvation = -3852.700276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.36931 -40.65813 -38.49836 -36.98964 -36.20701 -33.91674 -33.22905 -31.79883 -29.94772 -29.79301 -29.25436 -26.09772 -25.06761 -24.17917 -22.29185 -21.86695 -21.67495 -21.33447 -20.35408 -18.93425 -17.86656 -17.37476 -16.63180 -16.34653 -16.14907 -15.68506 -15.33881 -15.08499 -14.64452 -14.57210 -14.34999 -14.17711 -13.87503 -13.66012 -13.51909 -13.33343 -12.89392 -12.79346 -12.64330 -12.25919 -12.10081 -11.83790 -11.49991 -11.00946 -10.77534 -10.53290 -10.34123 -10.31660 -10.15205 -10.04488 -9.95286 -9.55026 -9.29197 -9.17220 -8.85574 -8.63496 -8.48387 -7.91286 -6.07286 -4.15251 1.62621 1.66958 2.08738 2.76369 2.88019 3.28007 3.33643 3.35377 3.50032 3.83593 4.06840 4.09951 4.37359 4.40857 4.53280 4.58894 4.63358 5.00823 5.15138 5.23511 5.28465 5.38166 5.54154 5.62764 5.74036 5.88454 5.94411 6.18186 6.33246 6.39589 6.49068 6.53277 6.67151 6.78300 6.79376 6.91485 6.93419 7.06091 7.09708 7.51901 7.74470 7.74835 7.83550 7.88950 8.06246 8.28378 8.46605 8.88509 9.50414 10.98518 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026844 B = 0.002401 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.806383 B =11660.550200 C =12327.261813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.062 3.938 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.041 3.959 10 H 0.030 0.970 11 C -0.114 4.114 12 C -0.127 4.127 13 C 0.050 3.950 14 N -0.565 5.565 15 C 0.495 3.505 16 O -0.524 6.524 17 C 0.515 3.485 18 O -0.509 6.509 19 N -0.706 5.706 20 C 0.104 3.896 21 C 0.094 3.906 22 N -0.457 5.457 23 C -0.054 4.054 24 C -0.030 4.030 25 N -0.495 5.495 26 C 0.184 3.816 27 C 0.108 3.892 28 H 0.264 0.736 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.142 0.858 34 H 0.056 0.944 35 H 0.415 0.585 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.175 0.825 41 H 0.170 0.830 42 H 0.205 0.795 43 H 0.049 0.951 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.292 -14.451 -3.759 18.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.077 0.923 9 C 0.022 3.978 10 H 0.048 0.952 11 C -0.152 4.152 12 C -0.166 4.166 13 C -0.072 4.072 14 N -0.296 5.296 15 C 0.276 3.724 16 O -0.402 6.402 17 C 0.298 3.702 18 O -0.385 6.385 19 N -0.361 5.361 20 C -0.021 4.021 21 C -0.030 4.030 22 N -0.141 5.141 23 C -0.186 4.186 24 C -0.177 4.177 25 N -0.213 5.213 26 C -0.098 4.098 27 C -0.012 4.012 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.158 0.842 34 H 0.074 0.926 35 H 0.252 0.748 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.193 0.807 41 H 0.187 0.813 42 H 0.222 0.778 43 H 0.068 0.932 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.443 -15.056 -4.091 19.349 hybrid contribution 0.567 2.076 0.424 2.194 sum -10.877 -12.980 -3.667 17.327 Atomic orbital electron populations 1.69858 1.05804 1.27035 1.49440 1.25058 0.94921 0.99341 0.94735 0.86617 0.79566 0.82945 0.78651 1.20201 1.21237 1.20231 1.21062 0.92976 0.90026 1.51739 0.92261 1.19045 0.92683 0.92523 0.93524 0.95223 1.21675 0.98559 0.94346 1.00570 1.21856 0.98429 0.98595 0.97678 1.23077 0.95328 0.90825 0.97964 1.48468 1.04278 1.10343 1.66543 1.19652 0.84042 0.87997 0.80703 1.90763 1.62068 1.38762 1.48571 1.20857 0.82226 0.90346 0.76740 1.90337 1.60084 1.41643 1.46451 1.45596 1.09465 1.11058 1.69957 1.21673 0.91179 0.85463 1.03746 1.22000 0.92820 0.82707 1.05450 1.45396 1.43592 1.14784 1.10328 1.22822 1.05476 0.97602 0.92696 1.22340 1.05949 0.96316 0.93134 1.70315 1.16264 1.24402 1.10339 1.25097 1.03127 0.85690 0.95915 1.22611 0.98784 0.80524 0.99237 0.92562 0.93010 0.93200 0.92334 0.92210 0.84151 0.92583 0.74802 0.90178 0.90131 0.87683 0.87854 0.80733 0.81291 0.77809 0.93235 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.98 11.41 55.43 0.63 -24.34 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.52 -13.82 8.56 -34.44 -0.29 -14.12 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.04 1.01 2.26 -91.43 -0.21 0.80 16 10 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 11 C -0.11 -2.30 5.10 -26.69 -0.14 -2.43 16 12 C -0.13 -2.21 6.08 -26.61 -0.16 -2.37 16 13 C 0.05 0.85 6.27 -3.71 -0.02 0.83 16 14 N -0.56 -11.31 2.97 -173.01 -0.51 -11.82 16 15 C 0.50 9.36 7.74 -11.58 -0.09 9.27 16 16 O -0.52 -11.15 15.94 5.50 0.09 -11.06 16 17 C 0.52 7.66 7.78 -11.58 -0.09 7.57 16 18 O -0.51 -8.10 13.10 5.49 0.07 -8.03 16 19 N -0.71 -7.32 5.55 -60.73 -0.34 -7.66 16 20 C 0.10 0.81 6.00 -4.04 -0.02 0.79 16 21 C 0.09 0.48 6.27 -4.04 -0.03 0.45 16 22 N -0.46 -3.28 2.75 -118.57 -0.33 -3.60 16 23 C -0.05 -0.41 11.58 -16.56 -0.19 -0.60 16 24 C -0.03 -0.27 11.87 -17.81 -0.21 -0.49 16 25 N -0.50 -5.41 11.25 -14.66 -0.16 -5.58 16 26 C 0.18 1.52 12.56 -90.37 -1.14 0.39 16 27 C 0.11 2.55 5.41 -3.49 -0.02 2.53 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.14 2.33 3.78 -56.76 -0.21 2.11 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.42 3.78 7.96 -40.82 -0.32 3.46 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.18 0.89 8.06 -52.49 -0.42 0.46 16 41 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.21 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.12 3.32 5.20 -51.93 -0.27 3.05 16 LS Contribution 363.34 15.07 5.48 5.48 Total: -1.00 -32.97 363.34 -9.07 -42.03 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.27 Total: 4.56 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -2.70 Total: 4.21 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.71 Total: -53.00 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.16 Total: -19.09 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.97 -9.07 -42.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330822260.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.499 kcal (2) G-P(sol) polarization free energy of solvation -32.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds