Wall clock time and date at job start Tue Mar 31 2020 12:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00004 * 2 1 4 4 H 1.48505 * 109.47200 * 240.00212 * 3 2 1 5 5 H 1.48507 * 109.46922 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47283 * 119.99944 * 3 2 1 7 7 C 1.37877 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00058 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99968 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.49413 * 300.06048 * 9 7 2 11 11 C 1.53042 * 109.49638 * 180.02562 * 9 7 2 12 12 C 1.53042 * 109.53782 * 178.68026 * 11 9 7 13 13 C 1.53202 * 109.31136 * 61.36132 * 12 11 9 14 14 N 1.46922 * 108.77217 * 305.36602 * 13 12 11 15 15 C 1.34782 * 120.62898 * 233.58104 * 14 13 12 16 16 O 1.21347 * 120.00368 * 187.08937 * 15 14 13 17 17 C 1.49456 * 119.99882 * 7.09352 * 15 14 13 18 18 O 1.21352 * 119.99706 * 6.39831 * 17 15 14 19 19 N 1.34771 * 120.00059 * 186.39738 * 17 15 14 20 20 C 1.46492 * 120.00139 * 179.97438 * 19 17 15 21 21 C 1.53004 * 109.47408 * 179.97438 * 20 19 17 22 22 N 1.46501 * 109.46982 * 180.02562 * 21 20 19 23 23 C 1.36879 * 126.39456 * 90.00735 * 22 21 20 24 24 C 1.34676 * 106.81490 * 179.97438 * 23 22 21 25 25 N 1.34130 * 108.01786 * 0.22704 * 24 23 22 26 26 C 1.30497 * 109.25979 * 359.61467 * 25 24 23 27 27 C 1.46920 * 118.74400 * 53.86512 * 14 13 12 28 28 H 0.97001 * 120.00301 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46534 * 58.65887 * 11 9 7 30 30 H 1.09007 * 109.44667 * 298.69194 * 11 9 7 31 31 H 1.08996 * 109.49612 * 301.41273 * 12 11 9 32 32 H 1.09000 * 109.50114 * 181.31062 * 12 11 9 33 33 H 1.08996 * 109.58576 * 185.57680 * 13 12 11 34 34 H 1.09000 * 109.70355 * 65.22282 * 13 12 11 35 35 H 0.96998 * 119.99752 * 359.97438 * 19 17 15 36 36 H 1.09003 * 109.47064 * 60.00101 * 20 19 17 37 37 H 1.08993 * 109.47601 * 300.00262 * 20 19 17 38 38 H 1.09003 * 109.46763 * 60.00115 * 21 20 19 39 39 H 1.09002 * 109.46866 * 300.00190 * 21 20 19 40 40 H 1.07994 * 126.59449 * 0.02562 * 23 22 21 41 41 H 1.07999 * 125.98970 * 179.97438 * 24 23 22 42 42 H 1.07994 * 125.65279 * 180.14604 * 26 25 24 43 43 H 1.09006 * 109.58856 * 65.91836 * 27 14 13 44 44 H 1.08996 * 109.59565 * 186.34932 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6231 -2.5566 0.8896 11 6 2.2451 -3.6628 0.0018 12 6 1.4811 -4.9885 0.0350 13 6 0.6067 -5.1008 -1.2178 14 7 -0.2518 -3.9116 -1.3034 15 6 -1.5881 -4.0368 -1.4269 16 8 -2.2737 -3.0555 -1.6256 17 6 -2.2256 -5.3842 -1.3189 18 8 -1.5579 -6.3479 -1.0054 19 7 -3.5418 -5.5291 -1.5695 20 6 -4.1665 -6.8499 -1.4642 21 6 -5.6558 -6.7378 -1.7965 22 7 -6.2806 -8.0586 -1.6906 23 6 -6.8498 -8.6003 -0.5697 24 6 -7.3002 -9.8222 -0.9132 25 7 -7.0093 -10.0230 -2.2071 26 6 -6.4031 -8.9689 -2.6806 27 6 0.3745 -2.5834 -1.2583 28 1 -0.4850 0.8400 -0.0004 29 1 2.8868 -3.5914 0.8800 30 1 2.8567 -3.6186 -0.8994 31 1 0.8503 -5.0227 0.9232 32 1 2.1898 -5.8163 0.0594 33 1 -0.0131 -5.9950 -1.1518 34 1 1.2393 -5.1594 -2.1035 35 1 -4.0755 -4.7587 -1.8196 36 1 -4.0488 -7.2276 -0.4485 37 1 -3.6883 -7.5350 -2.1641 38 1 -5.7740 -6.3599 -2.8121 39 1 -6.1338 -6.0529 -1.0961 40 1 -6.9242 -8.1367 0.4028 41 1 -7.8033 -10.5198 -0.2601 42 1 -6.0536 -8.8464 -3.6951 43 1 0.9905 -2.4394 -2.1460 44 1 -0.3984 -1.8159 -1.2189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330822260.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:28 Heat of formation + Delta-G solvation = -10.016032 kcal Electronic energy + Delta-G solvation = -26588.457993 eV Core-core repulsion = 22734.826212 eV Total energy + Delta-G solvation = -3853.631781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.94836 -41.97616 -39.87409 -38.54680 -37.10753 -35.27550 -34.53234 -33.45680 -31.56631 -30.58595 -29.96154 -27.61097 -26.81806 -25.17010 -23.59049 -23.39601 -22.26900 -22.03011 -21.56183 -20.49722 -19.00968 -18.46760 -18.07961 -17.79211 -17.21968 -16.82076 -16.50657 -16.43332 -16.06728 -15.57498 -15.44636 -15.23279 -14.85846 -14.75731 -14.71361 -14.46840 -14.44020 -14.06158 -13.82927 -13.46953 -13.37753 -13.05521 -12.85946 -12.74057 -12.52570 -12.30114 -12.18499 -11.72565 -11.63482 -11.17823 -10.99304 -10.95325 -10.67251 -10.55458 -10.48218 -10.04137 -9.55730 -9.44336 -8.13046 -6.28923 0.30953 1.01708 1.26053 1.42556 1.43556 1.51537 1.91535 2.12106 2.24544 2.41322 2.61725 3.15423 3.28455 3.55394 3.66638 3.91480 4.05895 4.14372 4.18154 4.23163 4.33295 4.39398 4.56537 4.63892 4.64831 4.72097 4.78743 4.81066 4.81953 5.04633 5.13286 5.22730 5.24723 5.32151 5.37163 5.48714 5.55924 5.82495 5.82645 5.91420 5.93564 6.25990 6.29094 6.43101 6.69850 6.82018 6.95604 7.15131 7.40743 8.91075 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026844 B = 0.002401 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.806383 B =11660.550200 C =12327.261813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.012 3.988 3 Si 0.958 3.042 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.536 4.536 8 H 0.062 0.938 9 C 0.039 3.961 10 H -0.010 1.010 11 C -0.108 4.108 12 C -0.121 4.121 13 C 0.050 3.950 14 N -0.575 5.575 15 C 0.487 3.513 16 O -0.556 6.556 17 C 0.525 3.475 18 O -0.518 6.518 19 N -0.682 5.682 20 C 0.108 3.892 21 C 0.101 3.899 22 N -0.456 5.456 23 C -0.051 4.051 24 C -0.058 4.058 25 N -0.539 5.539 26 C 0.179 3.821 27 C 0.122 3.878 28 H 0.262 0.738 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.097 0.903 33 H 0.156 0.844 34 H 0.071 0.929 35 H 0.424 0.576 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.129 0.871 39 H 0.120 0.880 40 H 0.199 0.801 41 H 0.178 0.822 42 H 0.231 0.769 43 H 0.045 0.955 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.098 -15.312 -4.253 19.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.187 4.187 3 Si 0.783 3.217 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.080 0.920 9 C 0.020 3.980 10 H 0.008 0.992 11 C -0.145 4.145 12 C -0.159 4.159 13 C -0.070 4.070 14 N -0.306 5.306 15 C 0.269 3.731 16 O -0.435 6.435 17 C 0.306 3.694 18 O -0.397 6.397 19 N -0.336 5.336 20 C -0.016 4.016 21 C -0.022 4.022 22 N -0.139 5.139 23 C -0.183 4.183 24 C -0.204 4.204 25 N -0.258 5.258 26 C -0.103 4.103 27 C 0.000 4.000 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.115 0.885 33 H 0.172 0.828 34 H 0.089 0.911 35 H 0.262 0.738 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.148 0.852 39 H 0.138 0.862 40 H 0.216 0.784 41 H 0.196 0.804 42 H 0.247 0.753 43 H 0.063 0.937 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.272 -15.949 -4.587 20.061 hybrid contribution 0.447 2.314 0.587 2.428 sum -10.825 -13.635 -4.000 17.863 Atomic orbital electron populations 1.70028 1.07289 1.27519 1.50461 1.25858 0.95645 1.02786 0.94443 0.85608 0.78311 0.78742 0.78999 1.19285 1.21244 1.19554 1.21456 0.93312 0.91332 1.51381 0.92019 1.18978 0.93098 0.93786 0.92126 0.99226 1.21571 0.97779 0.94230 1.00948 1.21823 0.98691 0.98060 0.97302 1.23303 0.95387 0.89878 0.98474 1.48467 1.05348 1.09799 1.66974 1.20402 0.83595 0.89666 0.79433 1.90737 1.62659 1.40478 1.49626 1.19917 0.83606 0.88079 0.77769 1.90311 1.60693 1.40982 1.47667 1.45442 1.07783 1.12686 1.67663 1.21793 0.92822 0.83510 1.03497 1.22073 0.90642 0.82016 1.07488 1.45484 1.43242 1.15222 1.09950 1.23213 1.04398 0.97117 0.93613 1.22672 1.07079 0.97579 0.93101 1.70272 1.17916 1.26157 1.11454 1.25629 1.02358 0.85261 0.97055 1.22038 0.97535 0.81916 0.98519 0.92891 0.92909 0.92440 0.93514 0.88506 0.82823 0.91067 0.73806 0.90829 0.89985 0.85249 0.86205 0.78409 0.80447 0.75268 0.93699 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.44 11.41 21.45 0.24 -53.20 16 2 C 0.01 0.68 5.30 84.66 0.45 1.12 16 3 Si 0.96 43.13 29.54 68.60 2.03 45.15 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.54 -29.05 8.56 25.60 0.22 -28.83 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.04 1.97 2.26 -11.32 -0.03 1.94 16 10 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 11 C -0.11 -4.27 5.10 30.62 0.16 -4.12 16 12 C -0.12 -3.98 6.08 30.68 0.19 -3.79 16 13 C 0.05 1.63 6.27 86.37 0.54 2.17 16 14 N -0.57 -23.09 2.97 -819.64 -2.43 -25.52 16 15 C 0.49 18.40 7.74 87.27 0.68 19.08 16 16 O -0.56 -24.12 15.94 -3.24 -0.05 -24.17 16 17 C 0.53 14.82 7.78 87.27 0.68 15.50 16 18 O -0.52 -15.45 13.10 -3.25 -0.04 -15.49 16 19 N -0.68 -12.60 5.55 -464.42 -2.58 -15.17 16 20 C 0.11 1.37 6.00 86.38 0.52 1.88 16 21 C 0.10 0.68 6.27 86.38 0.54 1.22 16 22 N -0.46 -5.37 2.75 -529.06 -1.46 -6.83 16 23 C -0.05 -0.67 11.58 83.09 0.96 0.29 16 24 C -0.06 -1.02 11.87 83.52 0.99 -0.03 16 25 N -0.54 -11.39 11.25 -200.31 -2.25 -13.64 16 26 C 0.18 2.64 12.56 180.26 2.26 4.90 16 27 C 0.12 5.91 5.41 86.51 0.47 6.38 16 28 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 29 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.16 4.75 3.78 -78.82 -0.30 4.45 16 34 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.42 6.75 7.96 -92.71 -0.74 6.01 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.20 1.49 8.06 -2.91 -0.02 1.47 16 41 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 42 H 0.23 1.76 8.06 -2.91 -0.02 1.74 16 43 H 0.04 2.16 8.14 -2.38 -0.02 2.14 16 44 H 0.09 4.85 5.20 -2.39 -0.01 4.84 16 Total: -1.00 -74.32 363.34 2.08 -72.24 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.00 Total: 18.91 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: 8.63 Total: 17.72 kcal Atomic # 7 Polarization: -105.89 SS G_CDS: -8.47 Total: -114.36 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -0.09 Total: -39.66 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -74.32 2.08 -72.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330822260.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.219 kcal (2) G-P(sol) polarization free energy of solvation -74.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds