Wall clock time and date at job start Tue Mar 31 2020 12:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86799 * 120.00046 * 2 1 4 4 H 1.48501 * 109.47072 * 270.00328 * 3 2 1 5 5 H 1.48501 * 109.47230 * 149.99788 * 3 2 1 6 6 H 1.48503 * 109.47333 * 29.99910 * 3 2 1 7 7 C 1.38945 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99834 * 202.12042 * 7 2 1 9 9 N 1.37106 * 119.99699 * 22.12240 * 7 2 1 10 10 C 1.34775 * 120.00120 * 41.84883 * 9 7 2 11 11 O 1.21291 * 119.99932 * 356.60316 * 10 9 7 12 12 C 1.50697 * 119.99923 * 176.59822 * 10 9 7 13 13 H 1.08997 * 109.44277 * 54.72706 * 12 10 9 14 14 C 1.53117 * 109.44207 * 174.65749 * 12 10 9 15 15 C 1.53479 * 109.37678 * 189.80508 * 14 12 10 16 16 C 1.50802 * 108.08280 * 311.11701 * 15 14 12 17 17 N 1.29601 * 128.73428 * 195.91903 * 16 15 14 18 18 N 1.28876 * 109.79417 * 179.85143 * 17 16 15 19 19 C 1.31375 * 109.93123 * 0.04406 * 18 17 16 20 20 O 1.35534 * 126.58089 * 180.02562 * 19 18 17 21 21 N 1.35429 * 106.84160 * 0.04741 * 19 18 17 22 22 C 1.46196 * 129.15490 * 179.84949 * 21 19 18 23 23 C 1.46500 * 119.99695 * 221.84932 * 9 7 2 24 24 C 1.54267 * 110.03403 * 62.05464 * 23 9 7 25 25 C 1.54886 * 104.19481 * 217.10550 * 24 23 9 26 26 C 1.54895 * 102.75155 * 37.94240 * 25 24 23 27 27 C 1.53883 * 110.03281 * 304.88655 * 23 9 7 28 28 H 0.96994 * 120.00103 * 184.32242 * 1 2 3 29 29 H 1.08997 * 109.48975 * 309.77830 * 14 12 10 30 30 H 1.09003 * 109.49129 * 69.83695 * 14 12 10 31 31 H 1.08999 * 109.73799 * 70.76694 * 15 14 12 32 32 H 1.08996 * 109.73922 * 191.46937 * 15 14 12 33 33 H 0.96692 * 114.00174 * 89.97422 * 20 19 18 34 34 H 1.09007 * 109.62535 * 77.32420 * 22 21 19 35 35 H 1.08995 * 109.57303 * 316.83966 * 22 21 19 36 36 H 1.08996 * 110.01384 * 183.49823 * 23 9 7 37 37 H 1.08996 * 110.48455 * 335.78429 * 24 23 9 38 38 H 1.08999 * 110.48493 * 98.42372 * 24 23 9 39 39 H 1.09004 * 110.75618 * 279.62435 * 25 24 23 40 40 H 1.09005 * 110.91639 * 156.33090 * 25 24 23 41 41 H 1.08997 * 110.48544 * 203.38103 * 26 25 24 42 42 H 1.09006 * 110.48376 * 80.73420 * 26 25 24 43 43 H 1.08992 * 110.03373 * 238.57164 * 27 23 9 44 44 H 1.08998 * 110.02791 * 0.02562 * 27 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 3.5457 1.4402 0.7001 6 1 1.4457 2.6527 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0292 -1.2376 0.3527 9 7 1.3990 -2.3471 -0.4461 10 6 0.6280 -2.3123 -1.5510 11 8 0.4235 -1.2581 -2.1149 12 6 0.0199 -3.5833 -2.0858 13 1 -0.5514 -4.0722 -1.2968 14 6 -0.9092 -3.2505 -3.2564 15 6 -1.7118 -4.5009 -3.6409 16 6 -0.7481 -5.6532 -3.7734 17 7 -0.9326 -6.8035 -4.3413 18 7 0.1381 -7.5142 -4.2456 19 6 1.0661 -6.8418 -3.6032 20 8 2.3199 -7.2686 -3.3156 21 7 0.5293 -5.6403 -3.2830 22 6 1.1351 -4.5207 -2.5642 23 6 1.5854 -3.6071 0.2777 24 6 1.0279 -3.4810 1.7105 25 6 2.0199 -4.2958 2.5772 26 6 3.3880 -3.9709 1.9276 27 6 3.0860 -3.9187 0.4157 28 1 -0.4850 -0.8376 0.0633 29 1 -1.5940 -2.4550 -2.9624 30 1 -0.3158 -2.9227 -4.1100 31 1 -2.4446 -4.7211 -2.8646 32 1 -2.2197 -4.3346 -4.5909 33 1 2.9725 -7.0602 -3.9979 34 1 1.8076 -3.9792 -3.2297 35 1 1.6909 -4.8962 -1.7051 36 1 1.0827 -4.4180 -0.2493 37 1 1.0153 -2.4373 2.0244 38 1 0.0278 -3.9102 1.7699 39 1 1.8045 -5.3623 2.5114 40 1 1.9957 -3.9617 3.6145 41 1 4.1101 -4.7578 2.1454 42 1 3.7565 -3.0063 2.2766 43 1 3.3114 -4.8811 -0.0435 44 1 3.6755 -3.1322 -0.0554 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335778203.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:31 Heat of formation + Delta-G solvation = 13.675358 kcal Electronic energy + Delta-G solvation = -28941.985026 eV Core-core repulsion = 25089.380581 eV Total energy + Delta-G solvation = -3852.604445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.22488 -39.75378 -37.82419 -37.44885 -36.36695 -33.77547 -33.13103 -31.97746 -30.50963 -28.70264 -28.33920 -27.04863 -25.31284 -24.35058 -22.91386 -22.31145 -20.55977 -20.36051 -19.99061 -19.12070 -18.80634 -17.14716 -16.80516 -16.64108 -16.21220 -15.36999 -14.92050 -14.79562 -14.62758 -14.24097 -14.05652 -13.93300 -13.79091 -13.39236 -12.99967 -12.80235 -12.61140 -12.26218 -11.72117 -11.62385 -11.41405 -11.31540 -11.15158 -11.00283 -10.88702 -10.80438 -10.77040 -10.70870 -10.35925 -10.26720 -10.24075 -10.19714 -10.06989 -9.72341 -9.02226 -8.87707 -8.32335 -7.53830 -6.48873 -4.00996 1.56880 2.10684 2.69424 3.35547 3.43374 3.54211 3.58142 3.73439 4.10148 4.24064 4.50634 4.54812 4.70387 4.79138 4.94727 5.01038 5.10387 5.17542 5.20477 5.30181 5.33583 5.42785 5.57337 5.64220 5.66152 5.74315 5.79320 5.81868 5.95449 5.96895 5.98346 6.04250 6.15886 6.21307 6.22851 6.31132 6.35800 6.49452 6.57501 6.69225 6.87752 7.22885 7.76475 8.27248 8.61780 8.64118 9.00026 9.42192 9.89089 10.80652 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013826 B = 0.005174 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.744477 B = 5410.560095 C = 6617.153377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.037 3.963 3 Si 1.076 2.924 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.424 4.424 8 H 0.075 0.925 9 N -0.443 5.443 10 C 0.450 3.550 11 O -0.527 6.527 12 C -0.117 4.117 13 H 0.089 0.911 14 C -0.102 4.102 15 C -0.035 4.035 16 C 0.197 3.803 17 N -0.282 5.282 18 N -0.293 5.293 19 C 0.346 3.654 20 O -0.436 6.436 21 N -0.476 5.476 22 C 0.111 3.889 23 C 0.119 3.881 24 C -0.128 4.128 25 C -0.122 4.122 26 C -0.116 4.116 27 C -0.131 4.131 28 H 0.271 0.729 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.404 0.596 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.052 0.948 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.192 -8.846 -1.181 9.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.176 4.176 3 Si 0.904 3.096 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.550 4.550 8 H 0.093 0.907 9 N -0.164 5.164 10 C 0.236 3.764 11 O -0.405 6.405 12 C -0.139 4.139 13 H 0.107 0.893 14 C -0.140 4.140 15 C -0.075 4.075 16 C -0.070 4.070 17 N -0.124 5.124 18 N -0.144 5.144 19 C 0.041 3.959 20 O -0.235 6.235 21 N -0.179 5.179 22 C -0.011 4.011 23 C 0.015 3.985 24 C -0.166 4.166 25 C -0.160 4.160 26 C -0.154 4.154 27 C -0.169 4.169 28 H 0.082 0.918 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.123 0.877 33 H 0.261 0.739 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.163 -8.047 -1.698 8.504 hybrid contribution 1.351 -0.789 0.538 1.655 sum 3.515 -8.836 -1.160 9.580 Atomic orbital electron populations 1.70529 1.07435 1.31078 1.37730 1.26104 0.95984 1.02104 0.93442 0.83389 0.74422 0.74799 0.77019 1.21163 1.21494 1.21194 1.19836 0.98250 0.86253 1.50694 0.90683 1.43634 1.44714 1.07352 1.20692 1.19604 0.85634 0.88667 0.82464 1.90668 1.60417 1.30541 1.58869 1.21630 0.96274 0.96730 0.99296 0.89333 1.21490 0.98491 0.96554 0.97513 1.20398 0.94488 0.88113 1.04455 1.24749 0.85714 0.98237 0.98318 1.73991 1.17485 1.01282 1.19642 1.74785 0.97272 1.24636 1.17685 1.21794 0.89688 0.83649 1.00763 1.84896 1.13072 1.77918 1.47650 1.46780 1.13610 1.14003 1.43484 1.22318 0.96526 0.84956 0.97349 1.21954 0.95151 0.88131 0.93314 1.22668 0.97144 1.02174 0.94653 1.22426 0.95588 0.99110 0.98842 1.22252 0.96726 1.01125 0.95309 1.22450 0.96982 1.00742 0.96746 0.91810 0.88477 0.90661 0.88523 0.87726 0.73870 0.88789 0.87674 0.91501 0.89218 0.92939 0.92381 0.92003 0.92610 0.91342 0.92912 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.53 12.19 55.50 0.68 -22.86 16 2 C 0.04 0.98 4.25 -17.47 -0.07 0.90 16 3 Si 1.08 24.02 29.97 -169.99 -5.10 18.92 16 4 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.42 -10.38 7.54 -14.93 -0.11 -10.49 16 8 H 0.08 1.83 6.95 -52.49 -0.36 1.46 16 9 N -0.44 -9.46 2.25 -106.54 -0.24 -9.70 16 10 C 0.45 9.70 5.73 -10.99 -0.06 9.64 16 11 O -0.53 -13.72 13.31 5.55 0.07 -13.65 16 12 C -0.12 -1.90 1.68 -91.54 -0.15 -2.05 16 13 H 0.09 1.40 7.40 -51.93 -0.38 1.01 16 14 C -0.10 -1.51 4.64 -26.42 -0.12 -1.63 16 15 C -0.04 -0.43 6.34 -27.59 -0.17 -0.61 16 16 C 0.20 2.93 7.78 -154.44 -1.20 1.73 16 17 N -0.28 -4.74 12.17 32.93 0.40 -4.34 16 18 N -0.29 -4.96 12.24 29.53 0.36 -4.60 16 19 C 0.35 5.10 9.30 -89.29 -0.83 4.27 16 20 O -0.44 -5.07 13.64 -18.30 -0.25 -5.32 16 21 N -0.48 -6.90 3.16 -115.38 -0.36 -7.27 16 22 C 0.11 1.59 5.88 -4.03 -0.02 1.56 16 23 C 0.12 2.05 2.40 -66.81 -0.16 1.89 16 24 C -0.13 -2.17 6.42 -25.07 -0.16 -2.33 16 25 C -0.12 -1.69 6.91 -24.74 -0.17 -1.86 16 26 C -0.12 -1.64 6.83 -25.07 -0.17 -1.81 16 27 C -0.13 -2.02 5.91 -25.61 -0.15 -2.17 16 28 H 0.27 7.66 7.14 -40.82 -0.29 7.37 16 29 H 0.10 1.55 7.86 -51.93 -0.41 1.14 16 30 H 0.07 1.15 8.12 -51.93 -0.42 0.73 16 31 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.40 2.52 9.06 45.56 0.41 2.94 16 34 H 0.09 1.34 8.12 -51.93 -0.42 0.92 16 35 H 0.11 1.47 5.19 -51.93 -0.27 1.20 16 36 H 0.07 1.06 4.19 -51.93 -0.22 0.84 16 37 H 0.09 1.82 7.20 -51.93 -0.37 1.45 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.05 0.71 7.95 -51.93 -0.41 0.30 16 44 H 0.08 1.39 6.69 -51.93 -0.35 1.04 16 LS Contribution 344.74 15.07 5.20 5.20 Total: -1.00 -32.44 344.74 -8.07 -40.51 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.26 Total: 6.04 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -3.57 Total: -2.95 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.83 Total: -48.76 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.18 Total: -18.97 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -5.10 Total: 18.92 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.44 -8.07 -40.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335778203.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.188 kcal (2) G-P(sol) polarization free energy of solvation -32.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds