Wall clock time and date at job start Tue Mar 31 2020 12:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86799 * 120.00046 * 2 1 4 4 H 1.48501 * 109.47072 * 270.00328 * 3 2 1 5 5 H 1.48501 * 109.47230 * 149.99788 * 3 2 1 6 6 H 1.48503 * 109.47333 * 29.99910 * 3 2 1 7 7 C 1.38945 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99834 * 202.12042 * 7 2 1 9 9 N 1.37106 * 119.99699 * 22.12240 * 7 2 1 10 10 C 1.34775 * 120.00120 * 41.84883 * 9 7 2 11 11 O 1.21291 * 119.99932 * 356.60316 * 10 9 7 12 12 C 1.50697 * 119.99923 * 176.59822 * 10 9 7 13 13 H 1.08997 * 109.44277 * 54.72706 * 12 10 9 14 14 C 1.53117 * 109.44207 * 174.65749 * 12 10 9 15 15 C 1.53479 * 109.37678 * 189.80508 * 14 12 10 16 16 C 1.50802 * 108.08280 * 311.11701 * 15 14 12 17 17 N 1.29601 * 128.73428 * 195.91903 * 16 15 14 18 18 N 1.28876 * 109.79417 * 179.85143 * 17 16 15 19 19 C 1.31375 * 109.93123 * 0.04406 * 18 17 16 20 20 O 1.35534 * 126.58089 * 180.02562 * 19 18 17 21 21 N 1.35429 * 106.84160 * 0.04741 * 19 18 17 22 22 C 1.46196 * 129.15490 * 179.84949 * 21 19 18 23 23 C 1.46500 * 119.99695 * 221.84932 * 9 7 2 24 24 C 1.54267 * 110.03403 * 62.05464 * 23 9 7 25 25 C 1.54886 * 104.19481 * 217.10550 * 24 23 9 26 26 C 1.54895 * 102.75155 * 37.94240 * 25 24 23 27 27 C 1.53883 * 110.03281 * 304.88655 * 23 9 7 28 28 H 0.96994 * 120.00103 * 184.32242 * 1 2 3 29 29 H 1.08997 * 109.48975 * 309.77830 * 14 12 10 30 30 H 1.09003 * 109.49129 * 69.83695 * 14 12 10 31 31 H 1.08999 * 109.73799 * 70.76694 * 15 14 12 32 32 H 1.08996 * 109.73922 * 191.46937 * 15 14 12 33 33 H 0.96692 * 114.00174 * 89.97422 * 20 19 18 34 34 H 1.09007 * 109.62535 * 77.32420 * 22 21 19 35 35 H 1.08995 * 109.57303 * 316.83966 * 22 21 19 36 36 H 1.08996 * 110.01384 * 183.49823 * 23 9 7 37 37 H 1.08996 * 110.48455 * 335.78429 * 24 23 9 38 38 H 1.08999 * 110.48493 * 98.42372 * 24 23 9 39 39 H 1.09004 * 110.75618 * 279.62435 * 25 24 23 40 40 H 1.09005 * 110.91639 * 156.33090 * 25 24 23 41 41 H 1.08997 * 110.48544 * 203.38103 * 26 25 24 42 42 H 1.09006 * 110.48376 * 80.73420 * 26 25 24 43 43 H 1.08992 * 110.03373 * 238.57164 * 27 23 9 44 44 H 1.08998 * 110.02791 * 0.02562 * 27 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 3.5457 1.4402 0.7001 6 1 1.4457 2.6527 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0292 -1.2376 0.3527 9 7 1.3990 -2.3471 -0.4461 10 6 0.6280 -2.3123 -1.5510 11 8 0.4235 -1.2581 -2.1149 12 6 0.0199 -3.5833 -2.0858 13 1 -0.5514 -4.0722 -1.2968 14 6 -0.9092 -3.2505 -3.2564 15 6 -1.7118 -4.5009 -3.6409 16 6 -0.7481 -5.6532 -3.7734 17 7 -0.9326 -6.8035 -4.3413 18 7 0.1381 -7.5142 -4.2456 19 6 1.0661 -6.8418 -3.6032 20 8 2.3199 -7.2686 -3.3156 21 7 0.5293 -5.6403 -3.2830 22 6 1.1351 -4.5207 -2.5642 23 6 1.5854 -3.6071 0.2777 24 6 1.0279 -3.4810 1.7105 25 6 2.0199 -4.2958 2.5772 26 6 3.3880 -3.9709 1.9276 27 6 3.0860 -3.9187 0.4157 28 1 -0.4850 -0.8376 0.0633 29 1 -1.5940 -2.4550 -2.9624 30 1 -0.3158 -2.9227 -4.1100 31 1 -2.4446 -4.7211 -2.8646 32 1 -2.2197 -4.3346 -4.5909 33 1 2.9725 -7.0602 -3.9979 34 1 1.8076 -3.9792 -3.2297 35 1 1.6909 -4.8962 -1.7051 36 1 1.0827 -4.4180 -0.2493 37 1 1.0153 -2.4373 2.0244 38 1 0.0278 -3.9102 1.7699 39 1 1.8045 -5.3623 2.5114 40 1 1.9957 -3.9617 3.6145 41 1 4.1101 -4.7578 2.1454 42 1 3.7565 -3.0063 2.2766 43 1 3.3114 -4.8811 -0.0435 44 1 3.6755 -3.1322 -0.0554 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335778203.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:31 Heat of formation + Delta-G solvation = -8.936908 kcal Electronic energy + Delta-G solvation = -28942.965567 eV Core-core repulsion = 25089.380581 eV Total energy + Delta-G solvation = -3853.584986 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.38235 -41.30561 -38.87520 -38.69277 -37.80044 -35.41807 -34.33510 -33.64665 -31.89721 -29.89801 -29.59686 -28.43996 -26.91250 -25.69091 -24.26971 -23.43804 -21.98969 -21.58408 -21.36559 -20.44770 -19.99635 -18.55333 -18.36237 -17.91971 -17.46753 -16.84076 -16.13644 -15.96826 -15.85589 -15.63124 -15.54590 -15.43888 -15.19344 -14.85097 -14.31983 -14.16984 -13.66492 -13.53661 -13.08011 -12.92518 -12.90303 -12.72519 -12.66038 -12.42986 -12.26691 -12.12757 -11.96322 -11.92903 -11.90577 -11.87344 -11.48502 -11.42969 -11.37661 -11.19141 -10.72697 -10.16018 -10.11261 -9.38404 -8.48702 -5.97713 0.48832 0.96820 1.53359 1.53939 1.62572 1.76236 2.04288 2.45141 2.64477 2.85992 3.09683 3.25597 3.34068 3.46242 3.51915 3.70086 3.82886 3.88725 3.96692 4.02232 4.17053 4.23527 4.30449 4.46666 4.52027 4.57057 4.60449 4.67717 4.71051 4.78187 4.84547 4.91161 4.96177 4.97806 5.07493 5.11535 5.20403 5.32458 5.42070 5.47234 5.53723 5.85591 6.26336 6.36586 6.86162 7.18301 7.45853 7.56496 8.13159 8.79742 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013826 B = 0.005174 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.744477 B = 5410.560095 C = 6617.153377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C -0.009 4.009 3 Si 1.111 2.889 4 H -0.293 1.293 5 H -0.261 1.261 6 H -0.289 1.289 7 C -0.419 4.419 8 H 0.073 0.927 9 N -0.453 5.453 10 C 0.447 3.553 11 O -0.578 6.578 12 C -0.106 4.106 13 H 0.098 0.902 14 C -0.095 4.095 15 C -0.024 4.024 16 C 0.197 3.803 17 N -0.304 5.304 18 N -0.324 5.324 19 C 0.359 3.641 20 O -0.434 6.434 21 N -0.477 5.477 22 C 0.124 3.876 23 C 0.115 3.885 24 C -0.130 4.130 25 C -0.112 4.112 26 C -0.114 4.114 27 C -0.127 4.127 28 H 0.256 0.744 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.127 0.873 33 H 0.429 0.571 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.047 0.953 38 H 0.058 0.942 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.050 0.950 43 H 0.082 0.918 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.360 -11.087 -0.877 11.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.216 4.216 3 Si 0.935 3.065 4 H -0.220 1.220 5 H -0.186 1.186 6 H -0.215 1.215 7 C -0.546 4.546 8 H 0.091 0.909 9 N -0.174 5.174 10 C 0.234 3.766 11 O -0.459 6.459 12 C -0.128 4.128 13 H 0.116 0.884 14 C -0.134 4.134 15 C -0.063 4.063 16 C -0.071 4.071 17 N -0.145 5.145 18 N -0.174 5.174 19 C 0.053 3.947 20 O -0.237 6.237 21 N -0.180 5.180 22 C 0.002 3.998 23 C 0.012 3.988 24 C -0.168 4.168 25 C -0.149 4.149 26 C -0.152 4.152 27 C -0.165 4.165 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.133 0.867 32 H 0.145 0.855 33 H 0.290 0.710 34 H 0.113 0.887 35 H 0.133 0.867 36 H 0.104 0.896 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.377 -10.334 -1.384 10.959 hybrid contribution 1.063 -0.165 0.426 1.158 sum 4.440 -10.498 -0.957 11.439 Atomic orbital electron populations 1.70641 1.08417 1.30091 1.41534 1.27163 0.96078 1.05172 0.93222 0.82945 0.74751 0.72146 0.76627 1.22042 1.18568 1.21529 1.19909 0.98106 0.87331 1.49234 0.90892 1.43817 1.44335 1.08058 1.21154 1.20393 0.84491 0.89768 0.81912 1.90638 1.61944 1.32999 1.60346 1.21468 0.96953 0.94411 0.99987 0.88353 1.21386 0.98060 0.97412 0.96495 1.20444 0.93883 0.85760 1.06247 1.25114 0.86043 0.98249 0.97662 1.73934 1.17944 1.02044 1.20625 1.74728 0.97944 1.25498 1.19278 1.21847 0.90420 0.83118 0.99294 1.84863 1.12302 1.77721 1.48843 1.46749 1.13626 1.13935 1.43685 1.22122 0.95469 0.84568 0.97675 1.22201 0.96979 0.86530 0.93132 1.22622 0.98678 1.00301 0.95227 1.22405 0.94116 0.99895 0.98529 1.22252 0.97505 1.01322 0.94101 1.22420 0.94834 1.01329 0.97915 0.93366 0.90059 0.91490 0.86705 0.85511 0.70969 0.88708 0.86729 0.89571 0.93425 0.92324 0.89878 0.91236 0.89644 0.93118 0.89987 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.11 12.19 21.66 0.26 -50.84 16 2 C -0.01 -0.49 4.25 84.92 0.36 -0.13 16 3 Si 1.11 49.51 29.97 68.60 2.06 51.56 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 6 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 7 C -0.42 -20.86 7.54 84.04 0.63 -20.23 16 8 H 0.07 3.59 6.95 -2.91 -0.02 3.57 16 9 N -0.45 -19.45 2.25 -609.38 -1.37 -20.82 16 10 C 0.45 19.44 5.73 87.66 0.50 19.94 16 11 O -0.58 -31.06 13.31 -3.06 -0.04 -31.10 16 12 C -0.11 -3.32 1.68 -11.39 -0.02 -3.34 16 13 H 0.10 2.92 7.40 -2.39 -0.02 2.91 16 14 C -0.09 -2.73 4.64 30.79 0.14 -2.59 16 15 C -0.02 -0.54 6.34 30.04 0.19 -0.35 16 16 C 0.20 5.43 7.78 137.84 1.07 6.50 16 17 N -0.30 -9.67 12.17 -49.73 -0.61 -10.27 16 18 N -0.32 -10.35 12.24 -173.87 -2.13 -12.48 16 19 C 0.36 9.62 9.30 179.88 1.67 11.29 16 20 O -0.43 -8.61 13.64 -88.38 -1.21 -9.81 16 21 N -0.48 -12.61 3.16 -630.23 -1.99 -14.61 16 22 C 0.12 3.27 5.88 86.55 0.51 3.78 16 23 C 0.12 3.79 2.40 45.72 0.11 3.90 16 24 C -0.13 -4.27 6.42 31.67 0.20 -4.07 16 25 C -0.11 -2.78 6.91 31.89 0.22 -2.56 16 26 C -0.11 -2.89 6.83 31.67 0.22 -2.68 16 27 C -0.13 -3.59 5.91 31.32 0.19 -3.41 16 28 H 0.26 15.19 7.14 -92.71 -0.66 14.53 16 29 H 0.08 2.63 7.86 -2.39 -0.02 2.61 16 30 H 0.07 2.03 8.12 -2.39 -0.02 2.01 16 31 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.43 3.83 9.06 -74.06 -0.67 3.16 16 34 H 0.09 2.53 8.12 -2.38 -0.02 2.51 16 35 H 0.11 2.82 5.19 -2.39 -0.01 2.80 16 36 H 0.09 2.49 4.19 -2.39 -0.01 2.48 16 37 H 0.05 1.98 7.20 -2.39 -0.02 1.96 16 38 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 41 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.08 1.86 7.95 -2.39 -0.02 1.84 16 44 H 0.06 1.87 6.69 -2.39 -0.02 1.86 16 Total: -1.00 -73.25 344.74 1.46 -71.80 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.48 Total: 20.53 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 6.00 Total: 6.04 kcal Atomic # 7 Polarization: -103.18 SS G_CDS: -5.84 Total: -109.02 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -1.25 Total: -40.91 kcal Atomic # 14 Polarization: 49.51 SS G_CDS: 2.06 Total: 51.56 kcal Total: -73.25 1.46 -71.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335778203.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.858 kcal (2) G-P(sol) polarization free energy of solvation -73.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds