Wall clock time and date at job start Tue Mar 31 2020 12:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86803 * 120.00272 * 2 1 4 4 H 1.48495 * 109.47543 * 275.04708 * 3 2 1 5 5 H 1.48499 * 109.46979 * 35.04593 * 3 2 1 6 6 H 1.48500 * 109.47175 * 155.04122 * 3 2 1 7 7 C 1.38956 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99699 * 345.04111 * 7 2 1 9 9 N 1.37097 * 120.00397 * 165.32145 * 7 2 1 10 10 C 1.34779 * 119.99414 * 315.13841 * 9 7 2 11 11 O 1.21291 * 120.00504 * 355.39128 * 10 9 7 12 12 C 1.50701 * 119.99564 * 175.38338 * 10 9 7 13 13 H 1.08996 * 109.44856 * 317.49770 * 12 10 9 14 14 C 1.53117 * 109.44519 * 197.56004 * 12 10 9 15 15 C 1.53492 * 109.37176 * 170.16213 * 14 12 10 16 16 C 1.50798 * 108.06089 * 48.92590 * 15 14 12 17 17 N 1.29602 * 128.73281 * 164.02255 * 16 15 14 18 18 N 1.28874 * 109.79699 * 180.19265 * 17 16 15 19 19 C 1.31372 * 109.92591 * 359.97289 * 18 17 16 20 20 O 1.35535 * 126.57760 * 179.97438 * 19 18 17 21 21 N 1.35426 * 106.84819 * 359.94409 * 19 18 17 22 22 C 1.46200 * 129.14714 * 180.18301 * 21 19 18 23 23 C 1.46497 * 120.00405 * 135.14384 * 9 7 2 24 24 C 1.54266 * 110.03358 * 54.82667 * 23 9 7 25 25 C 1.54887 * 104.19864 * 217.10814 * 24 23 9 26 26 C 1.54886 * 102.74692 * 37.94315 * 25 24 23 27 27 C 1.53878 * 110.03135 * 297.66144 * 23 9 7 28 28 H 0.97000 * 119.99694 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.49150 * 290.17066 * 14 12 10 30 30 H 1.08997 * 109.48654 * 50.22705 * 14 12 10 31 31 H 1.09002 * 109.76473 * 289.27590 * 15 14 12 32 32 H 1.09000 * 109.76843 * 168.58300 * 15 14 12 33 33 H 0.96699 * 114.00217 * 270.00025 * 20 19 18 34 34 H 1.09000 * 109.60586 * 43.19470 * 22 21 19 35 35 H 1.09000 * 109.74072 * 282.78144 * 22 21 19 36 36 H 1.08996 * 110.01631 * 176.27212 * 23 9 7 37 37 H 1.09004 * 110.48873 * 335.78880 * 24 23 9 38 38 H 1.09002 * 110.48641 * 98.42637 * 24 23 9 39 39 H 1.08997 * 110.75528 * 279.62549 * 25 24 23 40 40 H 1.08999 * 110.75529 * 156.25572 * 25 24 23 41 41 H 1.09005 * 110.48399 * 203.38070 * 26 25 24 42 42 H 1.09000 * 110.49066 * 80.73921 * 26 25 24 43 43 H 1.08995 * 110.03208 * 238.56614 * 27 23 9 44 44 H 1.09004 * 110.02951 * 0.02562 * 27 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.3890 2.1081 -1.3946 5 1 1.5030 2.6195 0.8040 6 1 3.5949 1.4117 0.5908 7 6 2.0089 -1.2034 0.0005 8 1 1.4963 -2.1228 0.2424 9 7 3.3463 -1.2229 -0.3003 10 6 3.8112 -0.5166 -1.3498 11 8 3.0374 0.0685 -2.0778 12 6 5.2927 -0.4538 -1.6188 13 1 5.8266 -0.3145 -0.6788 14 6 5.5916 0.7213 -2.5538 15 6 7.1094 0.9370 -2.6313 16 6 7.7581 -0.3976 -2.8999 17 7 8.9610 -0.6459 -3.3133 18 7 9.1308 -1.9187 -3.4230 19 6 8.0301 -2.5485 -3.0797 20 8 7.8364 -3.8899 -3.0707 21 7 7.1264 -1.6003 -2.7357 22 6 5.7483 -1.7625 -2.2755 23 6 4.2700 -2.0115 0.5189 24 6 3.7942 -3.4773 0.5894 25 6 4.1268 -3.9154 2.0373 26 6 3.8053 -2.6440 2.8615 27 6 4.2771 -1.4817 1.9635 28 1 -0.4850 0.8401 -0.0004 29 1 5.2036 0.5024 -3.5485 30 1 5.1160 1.6230 -2.1680 31 1 7.4732 1.3396 -1.6860 32 1 7.3425 1.6292 -3.4403 33 1 7.4991 -4.2442 -3.9049 34 1 5.6985 -2.5731 -1.5484 35 1 5.1016 -1.9909 -3.1227 36 1 5.2747 -1.9641 0.0989 37 1 2.7209 -3.5391 0.4091 38 1 4.3385 -4.0901 -0.1292 39 1 5.1805 -4.1789 2.1287 40 1 3.4917 -4.7461 2.3450 41 1 4.3578 -2.6487 3.8011 42 1 2.7338 -2.5712 3.0482 43 1 5.2854 -1.1781 2.2449 44 1 3.5929 -0.6381 2.0552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335778204.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:34 Heat of formation + Delta-G solvation = 17.546430 kcal Electronic energy + Delta-G solvation = -28957.037218 eV Core-core repulsion = 25104.600636 eV Total energy + Delta-G solvation = -3852.436583 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.28612 -39.96498 -37.86745 -37.57950 -36.50317 -33.85487 -33.27483 -32.18932 -30.89431 -28.82488 -28.33726 -27.31868 -25.62293 -24.45012 -22.95149 -22.37224 -20.82469 -20.37995 -19.87066 -19.14212 -18.79572 -17.37365 -17.00188 -16.43926 -16.28849 -15.47922 -15.08282 -14.93714 -14.79147 -14.57791 -14.24870 -14.05813 -13.62372 -13.38883 -12.97932 -12.83230 -12.64168 -12.32513 -12.26114 -11.86717 -11.73142 -11.56188 -11.23238 -11.20527 -11.06561 -10.98269 -10.76698 -10.69103 -10.39827 -10.27420 -10.25320 -10.15450 -10.07992 -9.94276 -9.07814 -8.78257 -8.73779 -7.76036 -6.34300 -4.14200 1.51234 2.03240 2.64091 3.07845 3.26937 3.44651 3.49154 3.65486 4.01222 4.16488 4.33539 4.45780 4.55440 4.63723 4.88918 4.95433 5.01114 5.10673 5.11282 5.20621 5.24395 5.36246 5.42667 5.54639 5.60321 5.62024 5.73994 5.81277 5.89988 5.93116 5.95362 5.98775 6.01349 6.16597 6.19025 6.21616 6.36303 6.42045 6.60366 6.72895 6.77518 7.18271 7.68905 7.81274 8.56479 8.59512 8.71254 9.25005 9.58504 10.71513 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013460 B = 0.005685 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.666755 B = 4923.789143 C = 6210.138497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.090 3.910 3 Si 0.901 3.099 4 H -0.256 1.256 5 H -0.305 1.305 6 H -0.277 1.277 7 C -0.336 4.336 8 H 0.099 0.901 9 N -0.450 5.450 10 C 0.453 3.547 11 O -0.536 6.536 12 C -0.122 4.122 13 H 0.095 0.905 14 C -0.107 4.107 15 C -0.035 4.035 16 C 0.196 3.804 17 N -0.280 5.280 18 N -0.292 5.292 19 C 0.348 3.652 20 O -0.436 6.436 21 N -0.477 5.477 22 C 0.115 3.885 23 C 0.121 3.879 24 C -0.131 4.131 25 C -0.121 4.121 26 C -0.117 4.117 27 C -0.131 4.131 28 H 0.273 0.727 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.405 0.595 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.014 -4.105 -0.664 11.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.119 4.119 3 Si 0.731 3.269 4 H -0.181 1.181 5 H -0.234 1.234 6 H -0.203 1.203 7 C -0.462 4.462 8 H 0.116 0.884 9 N -0.171 5.171 10 C 0.241 3.759 11 O -0.418 6.418 12 C -0.144 4.144 13 H 0.113 0.887 14 C -0.145 4.145 15 C -0.074 4.074 16 C -0.071 4.071 17 N -0.122 5.122 18 N -0.143 5.143 19 C 0.044 3.956 20 O -0.235 6.235 21 N -0.180 5.180 22 C -0.007 4.007 23 C 0.016 3.984 24 C -0.169 4.169 25 C -0.159 4.159 26 C -0.155 4.155 27 C -0.169 4.169 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.262 0.738 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.987 -3.687 -0.911 12.575 hybrid contribution -1.173 0.214 0.174 1.205 sum 10.814 -3.474 -0.737 11.382 Atomic orbital electron populations 1.69697 1.06663 1.28216 1.45331 1.25307 0.94944 0.99205 0.92425 0.86488 0.79214 0.82653 0.78498 1.18143 1.23387 1.20260 1.18694 0.81218 0.95492 1.50774 0.88383 1.43826 1.07673 1.42593 1.22997 1.19779 0.87962 0.85701 0.82472 1.90577 1.57024 1.46592 1.47577 1.21679 0.97815 0.94510 1.00400 0.88698 1.21552 0.93399 0.98726 1.00870 1.20379 0.94140 0.88497 1.04397 1.24694 0.90987 0.88985 1.02403 1.73998 1.13697 1.06507 1.18022 1.74800 1.19361 0.99413 1.20705 1.21793 0.86905 0.83659 1.03272 1.84900 1.86436 1.11404 1.40766 1.46738 1.13533 1.07382 1.50303 1.22123 0.77848 0.99584 1.01162 1.21975 0.92486 0.91987 0.91937 1.22694 1.03461 0.94651 0.96062 1.22430 1.00329 0.97647 0.95530 1.22264 1.01663 0.94296 0.97256 1.22446 1.00591 0.99617 0.94291 0.91671 0.89969 0.89073 0.88442 0.87546 0.73765 0.87806 0.88351 0.91265 0.89257 0.92607 0.92214 0.91859 0.92556 0.91009 0.92794 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.75 13.96 55.50 0.77 -23.98 16 2 C 0.09 2.45 4.97 -17.47 -0.09 2.36 16 3 Si 0.90 22.10 24.66 -169.99 -4.19 17.91 16 4 H -0.26 -6.55 6.48 56.52 0.37 -6.18 16 5 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.28 -6.36 7.08 56.52 0.40 -5.96 16 7 C -0.34 -8.43 8.31 -14.93 -0.12 -8.55 16 8 H 0.10 2.61 6.65 -52.48 -0.35 2.26 16 9 N -0.45 -9.35 2.07 -106.54 -0.22 -9.57 16 10 C 0.45 9.27 4.77 -10.98 -0.05 9.22 16 11 O -0.54 -13.14 12.12 5.55 0.07 -13.07 16 12 C -0.12 -1.86 1.66 -91.53 -0.15 -2.02 16 13 H 0.09 1.38 7.07 -51.93 -0.37 1.01 16 14 C -0.11 -1.49 4.59 -26.42 -0.12 -1.61 16 15 C -0.03 -0.40 6.34 -27.58 -0.17 -0.57 16 16 C 0.20 2.76 7.78 -154.45 -1.20 1.56 16 17 N -0.28 -4.50 12.17 32.93 0.40 -4.10 16 18 N -0.29 -4.74 12.24 29.53 0.36 -4.37 16 19 C 0.35 4.86 9.30 -89.29 -0.83 4.03 16 20 O -0.44 -4.74 13.64 -18.30 -0.25 -4.99 16 21 N -0.48 -6.49 3.16 -115.37 -0.36 -6.85 16 22 C 0.12 1.53 6.01 -4.02 -0.02 1.51 16 23 C 0.12 1.99 2.64 -66.81 -0.18 1.81 16 24 C -0.13 -1.96 6.40 -25.07 -0.16 -2.12 16 25 C -0.12 -1.57 6.91 -24.74 -0.17 -1.74 16 26 C -0.12 -1.66 6.83 -25.07 -0.17 -1.83 16 27 C -0.13 -2.11 6.30 -25.61 -0.16 -2.27 16 28 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.08 1.18 8.12 -51.93 -0.42 0.75 16 30 H 0.09 1.36 8.06 -51.93 -0.42 0.94 16 31 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.41 2.25 9.06 45.56 0.41 2.66 16 34 H 0.10 1.30 6.30 -51.93 -0.33 0.98 16 35 H 0.10 1.29 8.12 -51.93 -0.42 0.87 16 36 H 0.07 1.01 4.29 -51.93 -0.22 0.78 16 37 H 0.09 1.58 6.15 -51.93 -0.32 1.26 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.08 1.57 7.45 -51.93 -0.39 1.18 16 LS Contribution 342.21 15.07 5.16 5.16 Total: -1.00 -32.94 342.21 -7.25 -40.18 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.38 Total: 3.93 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -3.61 Total: -0.24 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: 0.95 Total: -48.88 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.18 Total: -18.06 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.19 Total: 17.91 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.94 -7.25 -40.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335778204.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.731 kcal (2) G-P(sol) polarization free energy of solvation -32.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds