Wall clock time and date at job start Tue Mar 31 2020 12:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86803 * 120.00272 * 2 1 4 4 H 1.48495 * 109.47543 * 275.04708 * 3 2 1 5 5 H 1.48499 * 109.46979 * 35.04593 * 3 2 1 6 6 H 1.48500 * 109.47175 * 155.04122 * 3 2 1 7 7 C 1.38956 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99699 * 345.04111 * 7 2 1 9 9 N 1.37097 * 120.00397 * 165.32145 * 7 2 1 10 10 C 1.34779 * 119.99414 * 315.13841 * 9 7 2 11 11 O 1.21291 * 120.00504 * 355.39128 * 10 9 7 12 12 C 1.50701 * 119.99564 * 175.38338 * 10 9 7 13 13 H 1.08996 * 109.44856 * 317.49770 * 12 10 9 14 14 C 1.53117 * 109.44519 * 197.56004 * 12 10 9 15 15 C 1.53492 * 109.37176 * 170.16213 * 14 12 10 16 16 C 1.50798 * 108.06089 * 48.92590 * 15 14 12 17 17 N 1.29602 * 128.73281 * 164.02255 * 16 15 14 18 18 N 1.28874 * 109.79699 * 180.19265 * 17 16 15 19 19 C 1.31372 * 109.92591 * 359.97289 * 18 17 16 20 20 O 1.35535 * 126.57760 * 179.97438 * 19 18 17 21 21 N 1.35426 * 106.84819 * 359.94409 * 19 18 17 22 22 C 1.46200 * 129.14714 * 180.18301 * 21 19 18 23 23 C 1.46497 * 120.00405 * 135.14384 * 9 7 2 24 24 C 1.54266 * 110.03358 * 54.82667 * 23 9 7 25 25 C 1.54887 * 104.19864 * 217.10814 * 24 23 9 26 26 C 1.54886 * 102.74692 * 37.94315 * 25 24 23 27 27 C 1.53878 * 110.03135 * 297.66144 * 23 9 7 28 28 H 0.97000 * 119.99694 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.49150 * 290.17066 * 14 12 10 30 30 H 1.08997 * 109.48654 * 50.22705 * 14 12 10 31 31 H 1.09002 * 109.76473 * 289.27590 * 15 14 12 32 32 H 1.09000 * 109.76843 * 168.58300 * 15 14 12 33 33 H 0.96699 * 114.00217 * 270.00025 * 20 19 18 34 34 H 1.09000 * 109.60586 * 43.19470 * 22 21 19 35 35 H 1.09000 * 109.74072 * 282.78144 * 22 21 19 36 36 H 1.08996 * 110.01631 * 176.27212 * 23 9 7 37 37 H 1.09004 * 110.48873 * 335.78880 * 24 23 9 38 38 H 1.09002 * 110.48641 * 98.42637 * 24 23 9 39 39 H 1.08997 * 110.75528 * 279.62549 * 25 24 23 40 40 H 1.08999 * 110.75529 * 156.25572 * 25 24 23 41 41 H 1.09005 * 110.48399 * 203.38070 * 26 25 24 42 42 H 1.09000 * 110.49066 * 80.73921 * 26 25 24 43 43 H 1.08995 * 110.03208 * 238.56614 * 27 23 9 44 44 H 1.09004 * 110.02951 * 0.02562 * 27 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.3890 2.1081 -1.3946 5 1 1.5030 2.6195 0.8040 6 1 3.5949 1.4117 0.5908 7 6 2.0089 -1.2034 0.0005 8 1 1.4963 -2.1228 0.2424 9 7 3.3463 -1.2229 -0.3003 10 6 3.8112 -0.5166 -1.3498 11 8 3.0374 0.0685 -2.0778 12 6 5.2927 -0.4538 -1.6188 13 1 5.8266 -0.3145 -0.6788 14 6 5.5916 0.7213 -2.5538 15 6 7.1094 0.9370 -2.6313 16 6 7.7581 -0.3976 -2.8999 17 7 8.9610 -0.6459 -3.3133 18 7 9.1308 -1.9187 -3.4230 19 6 8.0301 -2.5485 -3.0797 20 8 7.8364 -3.8899 -3.0707 21 7 7.1264 -1.6003 -2.7357 22 6 5.7483 -1.7625 -2.2755 23 6 4.2700 -2.0115 0.5189 24 6 3.7942 -3.4773 0.5894 25 6 4.1268 -3.9154 2.0373 26 6 3.8053 -2.6440 2.8615 27 6 4.2771 -1.4817 1.9635 28 1 -0.4850 0.8401 -0.0004 29 1 5.2036 0.5024 -3.5485 30 1 5.1160 1.6230 -2.1680 31 1 7.4732 1.3396 -1.6860 32 1 7.3425 1.6292 -3.4403 33 1 7.4991 -4.2442 -3.9049 34 1 5.6985 -2.5731 -1.5484 35 1 5.1016 -1.9909 -3.1227 36 1 5.2747 -1.9641 0.0989 37 1 2.7209 -3.5391 0.4091 38 1 4.3385 -4.0901 -0.1292 39 1 5.1805 -4.1789 2.1287 40 1 3.4917 -4.7461 2.3450 41 1 4.3578 -2.6487 3.8011 42 1 2.7338 -2.5712 3.0482 43 1 5.2854 -1.1781 2.2449 44 1 3.5929 -0.6381 2.0552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335778204.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:34 Heat of formation + Delta-G solvation = -6.846660 kcal Electronic energy + Delta-G solvation = -28958.094982 eV Core-core repulsion = 25104.600636 eV Total energy + Delta-G solvation = -3853.494346 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.35377 -41.49111 -38.92504 -38.69106 -37.83536 -35.48733 -34.35395 -34.01218 -32.15353 -29.93260 -29.53194 -28.68605 -27.15679 -25.69344 -24.23357 -23.40959 -22.21767 -21.57712 -21.12695 -20.36397 -20.00603 -18.85046 -18.19026 -17.79352 -17.54523 -17.11146 -16.45399 -16.13207 -15.81947 -15.70397 -15.50429 -15.40412 -15.07730 -14.95152 -14.49813 -14.15920 -13.93029 -13.58064 -13.40186 -13.37529 -12.93734 -12.84487 -12.62023 -12.49497 -12.38859 -12.28876 -12.07224 -11.92835 -11.83973 -11.82612 -11.45784 -11.35113 -11.31831 -11.21449 -10.80424 -10.46429 -10.12917 -9.54052 -8.40037 -6.17380 0.52008 0.97494 1.21399 1.30106 1.45531 1.57348 1.82758 2.36991 2.50067 2.70393 3.02944 3.12151 3.30125 3.42034 3.46567 3.73358 3.84745 3.88481 4.00030 4.01322 4.17038 4.22139 4.32335 4.48297 4.51020 4.61779 4.64096 4.70618 4.71834 4.80772 4.89575 4.91644 4.93493 5.03938 5.09808 5.13085 5.26067 5.37032 5.46724 5.49780 5.58101 5.72160 5.91690 6.39954 6.74964 6.89520 7.32918 7.49504 7.81070 8.69460 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013460 B = 0.005685 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.666755 B = 4923.789143 C = 6210.138497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.039 3.961 3 Si 0.946 3.054 4 H -0.274 1.274 5 H -0.311 1.311 6 H -0.251 1.251 7 C -0.316 4.316 8 H 0.072 0.928 9 N -0.461 5.461 10 C 0.455 3.545 11 O -0.580 6.580 12 C -0.114 4.114 13 H 0.114 0.886 14 C -0.105 4.105 15 C -0.025 4.025 16 C 0.198 3.802 17 N -0.305 5.305 18 N -0.325 5.325 19 C 0.361 3.639 20 O -0.435 6.435 21 N -0.477 5.477 22 C 0.125 3.875 23 C 0.116 3.884 24 C -0.131 4.131 25 C -0.111 4.111 26 C -0.117 4.117 27 C -0.135 4.135 28 H 0.270 0.730 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.128 0.872 33 H 0.429 0.571 34 H 0.118 0.882 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.044 0.956 43 H 0.083 0.917 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.382 -5.020 -0.184 15.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.164 4.164 3 Si 0.775 3.225 4 H -0.200 1.200 5 H -0.240 1.240 6 H -0.175 1.175 7 C -0.444 4.444 8 H 0.089 0.911 9 N -0.182 5.182 10 C 0.244 3.756 11 O -0.464 6.464 12 C -0.136 4.136 13 H 0.132 0.868 14 C -0.143 4.143 15 C -0.064 4.064 16 C -0.070 4.070 17 N -0.146 5.146 18 N -0.176 5.176 19 C 0.055 3.945 20 O -0.238 6.238 21 N -0.180 5.180 22 C 0.002 3.998 23 C 0.013 3.987 24 C -0.169 4.169 25 C -0.149 4.149 26 C -0.155 4.155 27 C -0.173 4.173 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.137 0.863 32 H 0.146 0.854 33 H 0.290 0.710 34 H 0.136 0.864 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.063 0.937 43 H 0.102 0.898 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.403 -4.642 -0.428 16.093 hybrid contribution -2.199 0.350 -0.040 2.227 sum 13.205 -4.292 -0.468 13.893 Atomic orbital electron populations 1.69797 1.08017 1.28422 1.49106 1.25930 0.95383 1.01880 0.93194 0.85751 0.79528 0.79908 0.77275 1.20037 1.24021 1.17512 1.18512 0.83377 0.93968 1.48516 0.91054 1.43983 1.06813 1.43341 1.24102 1.20633 0.90125 0.83534 0.81290 1.90559 1.58964 1.48004 1.48836 1.21601 0.93514 0.96474 1.01997 0.86836 1.21515 0.95248 0.97608 0.99948 1.20454 0.91678 0.87802 1.06432 1.25100 0.90616 0.89759 1.01523 1.73938 1.14803 1.06709 1.19147 1.74741 1.20636 0.99807 1.22380 1.21837 0.86323 0.84555 1.01775 1.84867 1.86537 1.09714 1.42665 1.46704 1.13335 1.07364 1.50582 1.21993 0.77808 0.98517 1.01448 1.22271 0.92729 0.91937 0.91751 1.22677 1.01449 0.94266 0.98517 1.22417 1.02179 0.97051 0.93238 1.22259 1.00379 0.94384 0.98455 1.22485 1.01395 0.98979 0.94426 0.92049 0.90759 0.90035 0.86297 0.85424 0.70952 0.86437 0.88269 0.88251 0.92896 0.90197 0.89354 0.91087 0.89919 0.93711 0.89815 0.93644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.09 13.96 21.66 0.30 -54.79 16 2 C 0.04 2.21 4.97 84.93 0.42 2.63 16 3 Si 0.95 46.49 24.66 68.60 1.69 48.18 16 4 H -0.27 -14.15 6.48 99.48 0.64 -13.50 16 5 H -0.31 -15.33 7.11 99.48 0.71 -14.62 16 6 H -0.25 -11.01 7.08 99.48 0.70 -10.31 16 7 C -0.32 -16.32 8.31 84.04 0.70 -15.63 16 8 H 0.07 4.01 6.65 -2.91 -0.02 3.99 16 9 N -0.46 -18.82 2.07 -609.37 -1.26 -20.09 16 10 C 0.45 18.03 4.77 87.66 0.42 18.45 16 11 O -0.58 -28.47 12.12 -3.06 -0.04 -28.50 16 12 C -0.11 -3.14 1.66 -11.38 -0.02 -3.16 16 13 H 0.11 2.77 7.07 -2.39 -0.02 2.76 16 14 C -0.10 -2.64 4.59 30.80 0.14 -2.50 16 15 C -0.02 -0.47 6.34 30.04 0.19 -0.28 16 16 C 0.20 4.91 7.78 137.84 1.07 5.98 16 17 N -0.30 -9.02 12.17 -49.73 -0.61 -9.63 16 18 N -0.32 -9.77 12.24 -173.87 -2.13 -11.90 16 19 C 0.36 8.89 9.30 179.88 1.67 10.57 16 20 O -0.43 -7.86 13.64 -88.39 -1.21 -9.06 16 21 N -0.48 -11.29 3.16 -630.21 -1.99 -13.28 16 22 C 0.12 2.87 6.01 86.55 0.52 3.39 16 23 C 0.12 3.53 2.64 45.72 0.12 3.65 16 24 C -0.13 -3.64 6.40 31.67 0.20 -3.44 16 25 C -0.11 -2.50 6.91 31.88 0.22 -2.28 16 26 C -0.12 -3.06 6.83 31.67 0.22 -2.84 16 27 C -0.13 -4.00 6.30 31.32 0.20 -3.80 16 28 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 29 H 0.07 1.99 8.12 -2.39 -0.02 1.97 16 30 H 0.08 2.26 8.06 -2.39 -0.02 2.24 16 31 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.43 3.20 9.06 -74.06 -0.67 2.53 16 34 H 0.12 2.41 6.30 -2.39 -0.02 2.39 16 35 H 0.10 2.32 8.12 -2.39 -0.02 2.30 16 36 H 0.10 2.43 4.29 -2.39 -0.01 2.42 16 37 H 0.05 1.87 6.15 -2.38 -0.01 1.86 16 38 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 42 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.04 1.69 7.45 -2.38 -0.02 1.68 16 Total: -1.00 -75.33 342.21 1.14 -74.19 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.31 Total: 14.13 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 6.07 Total: 10.75 kcal Atomic # 7 Polarization: -104.00 SS G_CDS: -5.69 Total: -109.68 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -1.24 Total: -37.56 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.69 Total: 48.18 kcal Total: -75.33 1.14 -74.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335778204.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.345 kcal (2) G-P(sol) polarization free energy of solvation -75.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds