Wall clock time and date at job start Tue Mar 31 2020 12:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00432 * 3 2 1 5 5 H 1.48507 * 109.46904 * 30.00095 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99918 * 3 2 1 7 7 C 1.37871 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00147 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00083 * 179.97438 * 7 2 1 10 10 C 1.53011 * 109.46921 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46911 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00065 * 180.02562 * 11 10 9 13 13 O 1.21363 * 119.99599 * 359.97438 * 12 11 10 14 14 C 1.49328 * 119.99982 * 180.02562 * 12 11 10 15 15 O 1.21403 * 119.99973 * 359.97438 * 14 12 11 16 16 N 1.34777 * 119.99582 * 180.27489 * 14 12 11 17 17 C 1.40487 * 119.99751 * 179.72617 * 16 14 12 18 18 C 1.40334 * 126.11162 * 359.67831 * 17 16 14 19 19 N 1.30834 * 108.20908 * 179.88304 * 18 17 16 20 20 N 1.40058 * 108.36116 * 0.38394 * 19 18 17 21 21 C 1.46496 * 125.99570 * 179.73013 * 20 19 18 22 22 C 1.54255 * 110.03540 * 212.19354 * 21 20 19 23 23 C 1.54888 * 104.19892 * 217.10557 * 22 21 20 24 24 C 1.54892 * 102.74631 * 37.94053 * 23 22 21 25 25 C 1.53879 * 110.03122 * 95.02531 * 21 20 19 26 26 C 1.35224 * 108.01215 * 359.75509 * 20 19 18 27 27 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47322 * 60.00364 * 9 7 2 29 29 H 1.08993 * 109.47405 * 299.99529 * 9 7 2 30 30 H 1.08995 * 109.46784 * 60.00085 * 10 9 7 31 31 H 1.08992 * 109.47177 * 299.99683 * 10 9 7 32 32 H 0.97000 * 120.00380 * 359.97438 * 11 10 9 33 33 H 0.97001 * 120.00485 * 359.71509 * 16 14 12 34 34 H 1.07997 * 125.90145 * 0.04743 * 18 17 16 35 35 H 1.08999 * 110.01541 * 333.64002 * 21 20 19 36 36 H 1.08999 * 110.48942 * 335.78486 * 22 21 20 37 37 H 1.09008 * 110.48675 * 98.42949 * 22 21 20 38 38 H 1.09001 * 110.76022 * 279.63224 * 23 22 21 39 39 H 1.08996 * 110.91793 * 156.32974 * 23 22 21 40 40 H 1.08998 * 110.48523 * 203.37630 * 24 23 22 41 41 H 1.08999 * 110.59954 * 80.79670 * 24 23 22 42 42 H 1.08996 * 110.03384 * 238.57582 * 25 21 20 43 43 H 1.09004 * 110.02818 * 0.02562 * 25 21 20 44 44 H 1.08000 * 126.18047 * 180.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 7 5.4866 -2.6365 -0.0009 12 6 6.1605 -3.8037 -0.0014 13 8 5.5537 -4.8547 -0.0013 14 6 7.6538 -3.8036 -0.0007 15 8 8.2608 -2.7522 -0.0003 16 7 8.3276 -4.9708 -0.0067 17 6 9.7325 -4.9708 -0.0120 18 6 10.5595 -3.8371 -0.0180 19 7 11.8045 -4.2392 -0.0190 20 7 11.8158 -5.6397 -0.0226 21 6 13.0079 -6.4912 -0.0304 22 6 12.7215 -7.7943 -0.8045 23 6 13.4925 -8.8819 -0.0158 24 6 13.2910 -8.4440 1.4562 25 6 13.3700 -6.9042 1.4070 26 6 10.5332 -6.0682 -0.0182 27 1 -0.4850 0.8400 0.0004 28 1 3.8753 -0.6804 0.8888 29 1 3.8746 -0.6800 -0.8911 30 1 3.6579 -3.1505 -0.8907 31 1 3.6587 -3.1501 0.8892 32 1 5.9716 -1.7965 -0.0014 33 1 7.8427 -5.8109 -0.0073 34 1 10.2260 -2.8099 -0.0187 35 1 13.8427 -5.9601 -0.4877 36 1 11.6531 -8.0100 -0.8065 37 1 13.0993 -7.7230 -1.8245 38 1 14.5500 -8.8739 -0.2798 39 1 13.0602 -9.8675 -0.1882 40 1 14.0842 -8.8468 2.0860 41 1 12.3154 -8.7644 1.8216 42 1 14.3808 -6.5743 1.6469 43 1 12.6584 -6.4714 2.1103 44 1 10.2048 -7.0970 -0.0190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336250340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:54 Heat of formation + Delta-G solvation = 2.874809 kcal Electronic energy + Delta-G solvation = -25577.625581 eV Core-core repulsion = 21724.552789 eV Total energy + Delta-G solvation = -3853.072792 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.82958 -40.42323 -38.70759 -38.12689 -35.61236 -34.68323 -32.81769 -32.28871 -30.32407 -29.93825 -29.30988 -27.75237 -25.90539 -23.88288 -22.66354 -21.76445 -21.06912 -20.84788 -20.45612 -19.70845 -18.33144 -17.84025 -17.01874 -16.56009 -16.42061 -15.97975 -15.84022 -15.10772 -15.01310 -14.67697 -14.35282 -14.28530 -14.17608 -14.03977 -13.68413 -13.16386 -13.13236 -12.62048 -12.56762 -12.28584 -11.79577 -11.76493 -11.57455 -11.47317 -11.44333 -11.25901 -11.22509 -11.02842 -11.00317 -10.45271 -10.30897 -9.96246 -9.65635 -9.49898 -9.33021 -8.81206 -8.61843 -8.00737 -6.12695 -4.13564 1.20208 1.71067 1.96957 2.50522 2.62117 3.26797 3.34931 3.36651 3.37994 3.71807 3.81073 3.90557 4.23218 4.37632 4.39019 4.56989 4.62740 4.66430 4.75828 4.79590 4.88702 4.98094 5.16767 5.20485 5.25230 5.30056 5.32500 5.44736 5.51284 5.59030 5.66887 5.84800 5.95077 6.08891 6.44605 6.48030 6.55753 6.68679 6.91509 7.06913 7.17631 7.39484 7.55308 7.61845 7.80593 8.15310 8.41075 8.90426 9.47236 10.99987 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.036898 B = 0.001927 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.674539 B =14528.850921 C =15036.061179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.127 3.873 11 N -0.688 5.688 12 C 0.504 3.496 13 O -0.528 6.528 14 C 0.509 3.491 15 O -0.511 6.511 16 N -0.616 5.616 17 C -0.003 4.003 18 C 0.054 3.946 19 N -0.286 5.286 20 N -0.360 5.360 21 C 0.162 3.838 22 C -0.137 4.137 23 C -0.122 4.122 24 C -0.126 4.126 25 C -0.138 4.138 26 C 0.025 3.975 27 H 0.265 0.735 28 H 0.025 0.975 29 H 0.021 0.979 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.410 0.590 33 H 0.422 0.578 34 H 0.207 0.793 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.664 -17.777 0.441 34.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.563 4.563 8 H 0.095 0.905 9 C -0.062 4.062 10 C 0.006 3.994 11 N -0.339 5.339 12 C 0.283 3.717 13 O -0.405 6.405 14 C 0.292 3.708 15 O -0.385 6.385 16 N -0.263 5.263 17 C -0.108 4.108 18 C -0.133 4.133 19 N -0.107 5.107 20 N -0.144 5.144 21 C 0.060 3.940 22 C -0.175 4.175 23 C -0.160 4.160 24 C -0.163 4.163 25 C -0.176 4.176 26 C -0.123 4.123 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.246 0.754 33 H 0.259 0.741 34 H 0.224 0.776 35 H 0.124 0.876 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 30.749 -17.328 0.443 35.298 hybrid contribution -0.621 0.636 -0.004 0.889 sum 30.128 -16.692 0.439 34.445 Atomic orbital electron populations 1.69898 1.06288 1.27132 1.50198 1.24983 0.94770 0.99175 0.94245 0.86770 0.80351 0.83482 0.78630 1.20148 1.21234 1.18926 1.20869 0.88425 0.94957 1.52036 0.90531 1.19831 0.98116 0.90944 0.97294 1.21739 0.74533 1.00916 1.02259 1.46194 1.09577 1.07942 1.70191 1.19691 0.87117 0.85382 0.79498 1.90761 1.69490 1.30968 1.49315 1.20436 0.89171 0.83657 0.77583 1.90643 1.69503 1.31090 1.47284 1.42413 1.03323 1.09877 1.70645 1.17724 0.83429 0.93793 1.15809 1.24558 0.88233 1.00726 0.99774 1.77430 1.20878 0.88584 1.23854 1.48435 1.04484 1.04568 1.56955 1.22002 0.85044 0.89739 0.97215 1.22840 1.02208 0.92902 0.99595 1.22478 1.00650 0.98265 0.94624 1.22386 1.02464 0.94545 0.96927 1.22640 1.02952 0.96589 0.95468 1.21659 0.84619 0.98839 1.07154 0.92499 0.95668 0.96101 0.91163 0.91144 0.75448 0.74099 0.77638 0.87611 0.90064 0.90102 0.90810 0.90590 0.90951 0.91186 0.90229 0.90589 0.80638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 13.96 55.43 0.77 -26.25 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 7 C -0.52 -14.42 9.66 -34.44 -0.33 -14.76 16 8 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 9 C -0.02 -0.54 4.16 -27.88 -0.12 -0.66 16 10 C 0.13 2.48 5.61 -4.04 -0.02 2.46 16 11 N -0.69 -11.41 5.55 -60.77 -0.34 -11.75 16 12 C 0.50 7.98 7.89 -11.64 -0.09 7.89 16 13 O -0.53 -9.31 16.48 5.49 0.09 -9.21 16 14 C 0.51 7.11 7.86 -11.64 -0.09 7.02 16 15 O -0.51 -7.77 13.63 5.45 0.07 -7.70 16 16 N -0.62 -7.04 5.46 -10.48 -0.06 -7.10 16 17 C 0.00 -0.03 6.90 -83.96 -0.58 -0.61 16 18 C 0.05 0.69 10.84 -17.19 -0.19 0.51 16 19 N -0.29 -3.56 12.56 30.72 0.39 -3.17 16 20 N -0.36 -3.38 3.45 -53.57 -0.18 -3.56 16 21 C 0.16 1.01 4.01 -66.82 -0.27 0.74 16 22 C -0.14 -0.58 6.37 -25.08 -0.16 -0.73 16 23 C -0.12 -0.37 6.91 -24.74 -0.17 -0.54 16 24 C -0.13 -0.47 6.83 -25.07 -0.17 -0.64 16 25 C -0.14 -0.74 6.60 -25.61 -0.17 -0.91 16 26 C 0.03 0.22 10.46 -16.91 -0.18 0.05 16 27 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.03 0.56 7.20 -51.93 -0.37 0.18 16 29 H 0.02 0.46 7.57 -51.93 -0.39 0.06 16 30 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 31 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.41 6.26 7.94 -40.82 -0.32 5.93 16 33 H 0.42 4.00 8.29 -40.82 -0.34 3.66 16 34 H 0.21 2.78 5.92 -52.49 -0.31 2.47 16 35 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.34 5.94 -51.93 -0.31 0.03 16 37 H 0.08 0.31 8.14 -51.92 -0.42 -0.11 16 38 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 39 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 41 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.54 7.92 -51.93 -0.41 0.13 16 44 H 0.18 0.94 6.89 -52.49 -0.36 0.58 16 LS Contribution 366.10 15.07 5.52 5.52 Total: -1.00 -32.79 366.10 -7.25 -40.04 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -6.21 Total: 5.11 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -2.63 Total: 1.71 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.58 Total: -51.83 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: 0.16 Total: -16.91 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.79 -7.25 -40.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336250340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.913 kcal (2) G-P(sol) polarization free energy of solvation -32.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds