Wall clock time and date at job start Tue Mar 31 2020 12:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00432 * 3 2 1 5 5 H 1.48507 * 109.46904 * 30.00095 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99918 * 3 2 1 7 7 C 1.37871 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00147 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00083 * 179.97438 * 7 2 1 10 10 C 1.53011 * 109.46921 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46911 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00065 * 180.02562 * 11 10 9 13 13 O 1.21363 * 119.99599 * 359.97438 * 12 11 10 14 14 C 1.49328 * 119.99982 * 180.02562 * 12 11 10 15 15 O 1.21403 * 119.99973 * 359.97438 * 14 12 11 16 16 N 1.34777 * 119.99582 * 180.27489 * 14 12 11 17 17 C 1.40487 * 119.99751 * 179.72617 * 16 14 12 18 18 C 1.40334 * 126.11162 * 359.67831 * 17 16 14 19 19 N 1.30834 * 108.20908 * 179.88304 * 18 17 16 20 20 N 1.40058 * 108.36116 * 0.38394 * 19 18 17 21 21 C 1.46496 * 125.99570 * 179.73013 * 20 19 18 22 22 C 1.54255 * 110.03540 * 212.19354 * 21 20 19 23 23 C 1.54888 * 104.19892 * 217.10557 * 22 21 20 24 24 C 1.54892 * 102.74631 * 37.94053 * 23 22 21 25 25 C 1.53879 * 110.03122 * 95.02531 * 21 20 19 26 26 C 1.35224 * 108.01215 * 359.75509 * 20 19 18 27 27 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47322 * 60.00364 * 9 7 2 29 29 H 1.08993 * 109.47405 * 299.99529 * 9 7 2 30 30 H 1.08995 * 109.46784 * 60.00085 * 10 9 7 31 31 H 1.08992 * 109.47177 * 299.99683 * 10 9 7 32 32 H 0.97000 * 120.00380 * 359.97438 * 11 10 9 33 33 H 0.97001 * 120.00485 * 359.71509 * 16 14 12 34 34 H 1.07997 * 125.90145 * 0.04743 * 18 17 16 35 35 H 1.08999 * 110.01541 * 333.64002 * 21 20 19 36 36 H 1.08999 * 110.48942 * 335.78486 * 22 21 20 37 37 H 1.09008 * 110.48675 * 98.42949 * 22 21 20 38 38 H 1.09001 * 110.76022 * 279.63224 * 23 22 21 39 39 H 1.08996 * 110.91793 * 156.32974 * 23 22 21 40 40 H 1.08998 * 110.48523 * 203.37630 * 24 23 22 41 41 H 1.08999 * 110.59954 * 80.79670 * 24 23 22 42 42 H 1.08996 * 110.03384 * 238.57582 * 25 21 20 43 43 H 1.09004 * 110.02818 * 0.02562 * 25 21 20 44 44 H 1.08000 * 126.18047 * 180.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 7 5.4866 -2.6365 -0.0009 12 6 6.1605 -3.8037 -0.0014 13 8 5.5537 -4.8547 -0.0013 14 6 7.6538 -3.8036 -0.0007 15 8 8.2608 -2.7522 -0.0003 16 7 8.3276 -4.9708 -0.0067 17 6 9.7325 -4.9708 -0.0120 18 6 10.5595 -3.8371 -0.0180 19 7 11.8045 -4.2392 -0.0190 20 7 11.8158 -5.6397 -0.0226 21 6 13.0079 -6.4912 -0.0304 22 6 12.7215 -7.7943 -0.8045 23 6 13.4925 -8.8819 -0.0158 24 6 13.2910 -8.4440 1.4562 25 6 13.3700 -6.9042 1.4070 26 6 10.5332 -6.0682 -0.0182 27 1 -0.4850 0.8400 0.0004 28 1 3.8753 -0.6804 0.8888 29 1 3.8746 -0.6800 -0.8911 30 1 3.6579 -3.1505 -0.8907 31 1 3.6587 -3.1501 0.8892 32 1 5.9716 -1.7965 -0.0014 33 1 7.8427 -5.8109 -0.0073 34 1 10.2260 -2.8099 -0.0187 35 1 13.8427 -5.9601 -0.4877 36 1 11.6531 -8.0100 -0.8065 37 1 13.0993 -7.7230 -1.8245 38 1 14.5500 -8.8739 -0.2798 39 1 13.0602 -9.8675 -0.1882 40 1 14.0842 -8.8468 2.0860 41 1 12.3154 -8.7644 1.8216 42 1 14.3808 -6.5743 1.6469 43 1 12.6584 -6.4714 2.1103 44 1 10.2048 -7.0970 -0.0190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336250340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:53 Heat of formation + Delta-G solvation = -20.683226 kcal Electronic energy + Delta-G solvation = -25578.647134 eV Core-core repulsion = 21724.552789 eV Total energy + Delta-G solvation = -3854.094345 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.67264 -41.55062 -39.71579 -38.79666 -36.99404 -35.87280 -34.76041 -32.96385 -32.11782 -30.72220 -29.70799 -28.45332 -27.41159 -25.26860 -23.42834 -22.81960 -22.39981 -21.65646 -21.16183 -20.63171 -19.39712 -19.00148 -18.64717 -17.64633 -17.21696 -16.91336 -16.72867 -16.32157 -16.20022 -16.02993 -15.51138 -15.44365 -15.14924 -14.77920 -14.60733 -14.55873 -14.45738 -13.85414 -13.38275 -13.06882 -13.05825 -12.86722 -12.69324 -12.20636 -12.17261 -12.12440 -12.05510 -11.97023 -11.89436 -11.77670 -11.69187 -11.49659 -11.48895 -10.78080 -10.72068 -10.44349 -10.24281 -8.86970 -8.29296 -6.35831 0.13256 0.83123 1.09387 1.40489 1.41984 1.52972 1.54400 1.63861 2.24424 2.37076 2.63820 3.06108 3.34341 3.37926 3.54380 3.75371 3.86820 3.95134 4.23813 4.27818 4.33705 4.39095 4.41354 4.43568 4.50801 4.61388 4.70800 4.74533 4.85117 4.91116 4.99479 5.01335 5.09862 5.20485 5.24737 5.31092 5.39024 5.41549 5.59468 5.63382 5.91677 6.00498 6.21406 6.32808 6.56853 6.70165 6.76071 6.90861 7.28789 8.86843 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.036898 B = 0.001927 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.674539 B =14528.850921 C =15036.061179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.241 1.241 7 C -0.535 4.535 8 H 0.037 0.963 9 C -0.018 4.018 10 C 0.142 3.858 11 N -0.686 5.686 12 C 0.509 3.491 13 O -0.546 6.546 14 C 0.513 3.487 15 O -0.526 6.526 16 N -0.597 5.597 17 C -0.031 4.031 18 C 0.037 3.963 19 N -0.315 5.315 20 N -0.353 5.353 21 C 0.151 3.849 22 C -0.133 4.133 23 C -0.116 4.116 24 C -0.122 4.122 25 C -0.135 4.135 26 C 0.052 3.948 27 H 0.268 0.732 28 H 0.036 0.964 29 H 0.034 0.966 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.418 0.582 33 H 0.432 0.568 34 H 0.193 0.807 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.056 0.944 44 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.459 -18.932 0.315 37.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.190 4.190 3 Si 0.774 3.226 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.164 1.164 7 C -0.574 4.574 8 H 0.055 0.945 9 C -0.056 4.056 10 C 0.019 3.981 11 N -0.337 5.337 12 C 0.290 3.710 13 O -0.424 6.424 14 C 0.295 3.705 15 O -0.402 6.402 16 N -0.244 5.244 17 C -0.135 4.135 18 C -0.149 4.149 19 N -0.137 5.137 20 N -0.136 5.136 21 C 0.051 3.949 22 C -0.171 4.171 23 C -0.154 4.154 24 C -0.160 4.160 25 C -0.173 4.173 26 C -0.097 4.097 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.255 0.745 33 H 0.271 0.729 34 H 0.210 0.790 35 H 0.123 0.877 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.075 0.925 44 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 33.604 -18.521 0.318 38.371 hybrid contribution -1.418 0.818 0.043 1.638 sum 32.186 -17.703 0.361 36.735 Atomic orbital electron populations 1.70055 1.08359 1.28332 1.51973 1.25975 0.95619 1.03524 0.93841 0.85646 0.79666 0.77991 0.79271 1.19138 1.21234 1.16412 1.21205 0.91211 0.93575 1.51365 0.94470 1.19704 0.94746 0.92988 0.98183 1.21299 0.76358 0.98919 1.01496 1.45949 1.08275 1.08849 1.70665 1.19959 0.88029 0.84640 0.78410 1.90752 1.70195 1.31538 1.49931 1.19936 0.87991 0.84265 0.78339 1.90655 1.69298 1.31733 1.48544 1.42210 1.03520 1.09458 1.69239 1.17836 0.83164 0.94240 1.18293 1.24436 0.88931 1.00818 1.00677 1.77379 1.20783 0.90490 1.25046 1.48803 1.05695 1.03878 1.55230 1.22380 0.84031 0.90203 0.98316 1.22864 1.02772 0.91783 0.99700 1.22470 1.01037 0.98254 0.93589 1.22381 1.02868 0.92998 0.97738 1.22606 1.02615 0.97900 0.94213 1.22228 0.83841 0.99872 1.03803 0.92352 0.94608 0.94728 0.92032 0.92056 0.74451 0.72894 0.79035 0.87742 0.89555 0.89579 0.90119 0.89443 0.90151 0.91122 0.89743 0.92532 0.76759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.46 13.96 21.45 0.30 -58.16 16 2 C 0.01 0.45 5.47 84.65 0.46 0.92 16 3 Si 0.95 42.75 27.47 68.60 1.88 44.64 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.24 -9.83 6.54 99.48 0.65 -9.18 16 7 C -0.54 -29.92 9.66 25.60 0.25 -29.67 16 8 H 0.04 2.30 7.99 -2.91 -0.02 2.27 16 9 C -0.02 -0.81 4.16 29.85 0.12 -0.69 16 10 C 0.14 5.50 5.61 86.38 0.48 5.99 16 11 N -0.69 -22.04 5.55 -464.53 -2.58 -24.62 16 12 C 0.51 15.68 7.89 87.23 0.69 16.36 16 13 O -0.55 -18.80 16.48 -3.29 -0.05 -18.85 16 14 C 0.51 13.86 7.86 87.23 0.69 14.55 16 15 O -0.53 -15.76 13.63 -3.41 -0.05 -15.81 16 16 N -0.60 -12.79 5.46 -305.41 -1.67 -14.46 16 17 C -0.03 -0.67 6.90 37.71 0.26 -0.41 16 18 C 0.04 0.95 10.84 85.35 0.93 1.88 16 19 N -0.31 -7.70 12.56 -56.72 -0.71 -8.42 16 20 N -0.35 -6.04 3.45 -323.41 -1.12 -7.15 16 21 C 0.15 1.59 4.01 45.71 0.18 1.77 16 22 C -0.13 -0.71 6.37 31.66 0.20 -0.51 16 23 C -0.12 -0.33 6.91 31.89 0.22 -0.11 16 24 C -0.12 -0.58 6.83 31.67 0.22 -0.37 16 25 C -0.13 -1.20 6.60 31.32 0.21 -1.00 16 26 C 0.05 0.79 10.46 83.62 0.87 1.66 16 27 H 0.27 15.40 8.31 -92.71 -0.77 14.62 16 28 H 0.04 1.51 7.20 -2.39 -0.02 1.49 16 29 H 0.03 1.44 7.57 -2.39 -0.02 1.42 16 30 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.42 12.15 7.94 -92.71 -0.74 11.41 16 33 H 0.43 7.34 8.29 -92.71 -0.77 6.57 16 34 H 0.19 5.35 5.92 -2.91 -0.02 5.33 16 35 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.09 0.39 5.94 -2.39 -0.01 0.37 16 37 H 0.09 0.41 8.14 -2.38 -0.02 0.39 16 38 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 40 H 0.08 0.28 8.14 -2.39 -0.02 0.27 16 41 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.06 0.74 7.92 -2.38 -0.02 0.72 16 44 H 0.22 1.41 6.89 -2.91 -0.02 1.39 16 Total: -1.00 -72.31 366.10 1.28 -71.03 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -0.51 Total: 21.42 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 5.78 Total: 10.38 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -5.77 Total: -112.81 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -0.10 Total: -34.66 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.88 Total: 44.64 kcal Total: -72.31 1.28 -71.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336250340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.351 kcal (2) G-P(sol) polarization free energy of solvation -72.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds