Wall clock time and date at job start Tue Mar 31 2020 12:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00135 * 2 1 4 4 H 1.48507 * 109.47041 * 269.99680 * 3 2 1 5 5 H 1.48504 * 109.47262 * 29.99652 * 3 2 1 6 6 H 1.48501 * 109.47334 * 149.99682 * 3 2 1 7 7 C 1.37879 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00008 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00109 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46784 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99501 * 179.97438 * 10 9 7 12 12 O 1.21359 * 120.00492 * 0.02562 * 11 10 9 13 13 C 1.49348 * 119.99732 * 179.97438 * 11 10 9 14 14 O 1.21381 * 120.00073 * 0.02562 * 13 11 10 15 15 N 1.34777 * 119.99732 * 179.97438 * 13 11 10 16 16 C 1.39935 * 119.99690 * 180.02562 * 15 13 11 17 17 C 1.40463 * 125.98248 * 359.97438 * 16 15 13 18 18 C 1.35211 * 107.86980 * 180.02562 * 17 16 15 19 19 N 1.34989 * 107.87529 * 0.02562 * 18 17 16 20 20 C 1.46496 * 125.97333 * 180.02562 * 19 18 17 21 21 C 1.53008 * 109.47091 * 34.97244 * 20 19 18 22 22 C 1.52998 * 109.47105 * 179.97438 * 21 20 19 23 23 C 1.53004 * 109.47074 * 60.00151 * 22 21 20 24 24 C 1.53008 * 109.47031 * 299.99894 * 23 22 21 25 25 C 1.52995 * 109.47244 * 274.97407 * 20 19 18 26 26 N 1.31272 * 125.98093 * 180.02562 * 16 15 13 27 27 H 0.97002 * 120.00379 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47047 * 60.00229 * 9 7 2 29 29 H 1.08999 * 109.47246 * 299.99555 * 9 7 2 30 30 H 0.96997 * 120.00699 * 0.02562 * 10 9 7 31 31 H 0.96997 * 120.00637 * 0.02562 * 15 13 11 32 32 H 1.07999 * 126.06535 * 0.02562 * 17 16 15 33 33 H 1.07994 * 126.06209 * 179.97438 * 18 17 16 34 34 H 1.08998 * 109.47659 * 154.97217 * 20 19 18 35 35 H 1.08994 * 109.46506 * 299.99800 * 21 20 19 36 36 H 1.09000 * 109.46585 * 60.00357 * 21 20 19 37 37 H 1.09003 * 109.47265 * 300.00192 * 22 21 20 38 38 H 1.08995 * 109.46916 * 179.97438 * 22 21 20 39 39 H 1.09005 * 109.47314 * 179.97438 * 23 22 21 40 40 H 1.08998 * 109.46986 * 59.99419 * 23 22 21 41 41 H 1.09002 * 109.46474 * 299.99929 * 24 23 22 42 42 H 1.09000 * 109.47161 * 180.02562 * 24 23 22 43 43 H 1.09009 * 109.47117 * 299.99905 * 25 20 19 44 44 H 1.08999 * 109.47721 * 59.99881 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5605 -5.1052 0.0011 13 6 2.7242 -6.0185 0.0005 14 8 3.9176 -5.7967 0.0000 15 7 2.2749 -7.2892 0.0015 16 6 3.1842 -8.3528 0.0015 17 6 4.5844 -8.2415 0.0000 18 6 5.1000 -9.4914 0.0000 19 7 4.0704 -10.3643 0.0009 20 6 4.1807 -11.8251 0.0017 21 6 5.3981 -12.2442 0.8284 22 6 5.5130 -13.7699 0.8298 23 6 5.6753 -14.2704 -0.6069 24 6 4.4578 -13.8513 -1.4336 25 6 4.3433 -12.3251 -1.4351 26 7 2.8780 -9.6293 0.0020 27 1 -0.4851 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6240 -2.5568 0.8903 30 1 3.1566 -3.4355 0.0009 31 1 1.3212 -7.4665 0.0023 32 1 5.1490 -7.3208 -0.0010 33 1 6.1495 -9.7462 -0.0014 34 1 3.2797 -12.2574 0.4370 35 1 6.2990 -11.8120 0.3930 36 1 5.2822 -11.8880 1.8520 37 1 4.6119 -14.2017 1.2654 38 1 6.3805 -14.0683 1.4183 39 1 5.7575 -15.3574 -0.6059 40 1 6.5763 -13.8385 -1.0425 41 1 3.5568 -14.2832 -0.9979 42 1 4.5732 -14.2083 -2.4570 43 1 3.4760 -12.0266 -2.0240 44 1 5.2443 -11.8930 -1.8705 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344017792.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:58 Heat of formation + Delta-G solvation = -3.679456 kcal Electronic energy + Delta-G solvation = -25735.434290 eV Core-core repulsion = 21882.077284 eV Total energy + Delta-G solvation = -3853.357006 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.61433 -40.19015 -38.79547 -37.94009 -35.28734 -34.23831 -32.63659 -32.34390 -31.41262 -30.12885 -28.70751 -27.69756 -25.01851 -23.43748 -23.16906 -22.49461 -21.47370 -20.56035 -20.23145 -19.44740 -18.32535 -17.59511 -16.55038 -16.33912 -15.87287 -15.66513 -15.45200 -15.12448 -15.02342 -14.72477 -14.53417 -14.26120 -13.78905 -13.60564 -13.45770 -13.10978 -13.03256 -12.89939 -12.76926 -12.05858 -11.93029 -11.84244 -11.72541 -11.24522 -11.20001 -11.17524 -11.02424 -10.95565 -10.91287 -10.70221 -10.57743 -10.31655 -9.47878 -9.13832 -8.93589 -8.82902 -8.31215 -8.10735 -6.21478 -4.28843 1.42493 1.92914 1.96718 2.83664 2.89177 3.24344 3.30649 3.33848 3.70609 3.98126 4.04368 4.14067 4.31833 4.32828 4.47061 4.56288 4.64114 4.81552 4.84097 4.88036 5.02780 5.05490 5.11917 5.15312 5.25840 5.44329 5.47985 5.52211 5.53084 5.59724 5.65742 5.71394 5.74063 5.85070 6.08564 6.71417 6.90835 6.94809 7.08422 7.13701 7.36848 7.53567 7.74105 7.86604 7.89384 8.37263 8.55867 8.82795 9.37361 10.88553 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.043753 B = 0.001900 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.803588 B =14737.115080 C =15079.591622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.246 3.754 10 N -0.669 5.669 11 C 0.496 3.504 12 O -0.533 6.533 13 C 0.519 3.481 14 O -0.498 6.498 15 N -0.614 5.614 16 C 0.300 3.700 17 C -0.265 4.265 18 C 0.062 3.938 19 N -0.363 5.363 20 C 0.168 3.832 21 C -0.130 4.130 22 C -0.115 4.115 23 C -0.124 4.124 24 C -0.116 4.116 25 C -0.131 4.131 26 N -0.320 5.320 27 H 0.267 0.733 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.405 0.595 31 H 0.427 0.573 32 H 0.173 0.827 33 H 0.174 0.826 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.627 -28.686 -0.368 31.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.585 4.585 8 H 0.085 0.915 9 C 0.126 3.874 10 N -0.318 5.318 11 C 0.274 3.726 12 O -0.412 6.412 13 C 0.300 3.700 14 O -0.370 6.370 15 N -0.265 5.265 16 C 0.044 3.956 17 C -0.296 4.296 18 C -0.084 4.084 19 N -0.147 5.147 20 C 0.066 3.934 21 C -0.168 4.168 22 C -0.153 4.153 23 C -0.162 4.162 24 C -0.154 4.154 25 C -0.169 4.169 26 N -0.150 5.150 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.240 0.760 31 H 0.265 0.735 32 H 0.190 0.810 33 H 0.191 0.809 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.515 -29.386 -0.360 31.564 hybrid contribution 0.970 1.474 -0.033 1.765 sum 12.485 -27.912 -0.393 30.580 Atomic orbital electron populations 1.69965 1.06110 1.27513 1.48609 1.24940 0.94954 0.99523 0.94480 0.86357 0.79643 0.82309 0.78295 1.20389 1.20976 1.19621 1.21203 0.93532 0.90065 1.53685 0.91495 1.19373 0.88137 0.81387 0.98497 1.46403 1.12771 1.04808 1.67810 1.19514 0.87904 0.84344 0.80856 1.90751 1.15671 1.84448 1.50296 1.20853 0.89360 0.83439 0.76330 1.90655 1.16333 1.84276 1.45728 1.42346 1.10415 1.02713 1.70991 1.19145 0.89982 0.87169 0.99285 1.21897 0.92207 0.98907 1.16540 1.22478 0.94933 0.89336 1.01669 1.48354 1.02742 1.05546 1.58029 1.21270 1.00571 0.74389 0.97124 1.21939 0.97215 0.97170 1.00504 1.21494 1.02667 0.93844 0.97265 1.21612 0.98441 1.00939 0.95182 1.21522 0.98739 0.94421 1.00753 1.22006 1.03271 0.96287 0.95380 1.77379 1.05225 1.01643 1.30734 0.92324 0.94620 0.94603 0.76006 0.73501 0.80957 0.80903 0.88108 0.90770 0.90694 0.91402 0.90994 0.91495 0.91656 0.91472 0.91189 0.90859 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.50 13.29 55.43 0.74 -24.76 16 2 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.91 20.70 29.54 -169.99 -5.02 15.68 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.55 -14.64 9.28 -34.44 -0.32 -14.96 16 8 H 0.07 1.70 7.60 -52.48 -0.40 1.30 16 9 C 0.25 6.34 5.43 -5.19 -0.03 6.31 16 10 N -0.67 -14.32 5.54 -61.94 -0.34 -14.67 16 11 C 0.50 9.99 7.89 -11.63 -0.09 9.90 16 12 O -0.53 -11.91 16.48 5.49 0.09 -11.82 16 13 C 0.52 9.04 7.85 -11.63 -0.09 8.95 16 14 O -0.50 -8.95 13.60 5.47 0.07 -8.87 16 15 N -0.61 -9.59 5.43 -11.58 -0.06 -9.65 16 16 C 0.30 4.57 8.10 -154.55 -1.25 3.32 16 17 C -0.27 -3.69 9.60 -39.82 -0.38 -4.08 16 18 C 0.06 0.66 10.58 -17.24 -0.18 0.47 16 19 N -0.36 -4.02 3.53 -54.88 -0.19 -4.22 16 20 C 0.17 1.27 3.20 -67.93 -0.22 1.06 16 21 C -0.13 -0.69 4.84 -26.73 -0.13 -0.82 16 22 C -0.11 -0.45 5.92 -26.73 -0.16 -0.61 16 23 C -0.12 -0.47 5.92 -26.72 -0.16 -0.63 16 24 C -0.12 -0.54 5.93 -26.70 -0.16 -0.70 16 25 C -0.13 -0.86 5.53 -26.71 -0.15 -1.01 16 26 N -0.32 -4.60 12.59 31.41 0.40 -4.20 16 27 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.40 7.97 7.79 -40.82 -0.32 7.65 16 31 H 0.43 6.21 8.29 -40.82 -0.34 5.87 16 32 H 0.17 2.55 5.91 -52.49 -0.31 2.24 16 33 H 0.17 1.18 7.25 -52.49 -0.38 0.80 16 34 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.35 7.15 -51.93 -0.37 -0.02 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 39 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 40 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 366.84 15.07 5.53 5.53 Total: -1.00 -31.63 366.84 -8.53 -40.17 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -6.33 Total: 7.95 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: -3.41 Total: 8.87 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.53 Total: -57.50 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: 0.16 Total: -20.69 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.63 -8.53 -40.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344017792.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.488 kcal (2) G-P(sol) polarization free energy of solvation -31.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds