Wall clock time and date at job start Tue Mar 31 2020 12:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00135 * 2 1 4 4 H 1.48507 * 109.47041 * 269.99680 * 3 2 1 5 5 H 1.48504 * 109.47262 * 29.99652 * 3 2 1 6 6 H 1.48501 * 109.47334 * 149.99682 * 3 2 1 7 7 C 1.37879 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00008 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00109 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46784 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99501 * 179.97438 * 10 9 7 12 12 O 1.21359 * 120.00492 * 0.02562 * 11 10 9 13 13 C 1.49348 * 119.99732 * 179.97438 * 11 10 9 14 14 O 1.21381 * 120.00073 * 0.02562 * 13 11 10 15 15 N 1.34777 * 119.99732 * 179.97438 * 13 11 10 16 16 C 1.39935 * 119.99690 * 180.02562 * 15 13 11 17 17 C 1.40463 * 125.98248 * 359.97438 * 16 15 13 18 18 C 1.35211 * 107.86980 * 180.02562 * 17 16 15 19 19 N 1.34989 * 107.87529 * 0.02562 * 18 17 16 20 20 C 1.46496 * 125.97333 * 180.02562 * 19 18 17 21 21 C 1.53008 * 109.47091 * 34.97244 * 20 19 18 22 22 C 1.52998 * 109.47105 * 179.97438 * 21 20 19 23 23 C 1.53004 * 109.47074 * 60.00151 * 22 21 20 24 24 C 1.53008 * 109.47031 * 299.99894 * 23 22 21 25 25 C 1.52995 * 109.47244 * 274.97407 * 20 19 18 26 26 N 1.31272 * 125.98093 * 180.02562 * 16 15 13 27 27 H 0.97002 * 120.00379 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47047 * 60.00229 * 9 7 2 29 29 H 1.08999 * 109.47246 * 299.99555 * 9 7 2 30 30 H 0.96997 * 120.00699 * 0.02562 * 10 9 7 31 31 H 0.96997 * 120.00637 * 0.02562 * 15 13 11 32 32 H 1.07999 * 126.06535 * 0.02562 * 17 16 15 33 33 H 1.07994 * 126.06209 * 179.97438 * 18 17 16 34 34 H 1.08998 * 109.47659 * 154.97217 * 20 19 18 35 35 H 1.08994 * 109.46506 * 299.99800 * 21 20 19 36 36 H 1.09000 * 109.46585 * 60.00357 * 21 20 19 37 37 H 1.09003 * 109.47265 * 300.00192 * 22 21 20 38 38 H 1.08995 * 109.46916 * 179.97438 * 22 21 20 39 39 H 1.09005 * 109.47314 * 179.97438 * 23 22 21 40 40 H 1.08998 * 109.46986 * 59.99419 * 23 22 21 41 41 H 1.09002 * 109.46474 * 299.99929 * 24 23 22 42 42 H 1.09000 * 109.47161 * 180.02562 * 24 23 22 43 43 H 1.09009 * 109.47117 * 299.99905 * 25 20 19 44 44 H 1.08999 * 109.47721 * 59.99881 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5605 -5.1052 0.0011 13 6 2.7242 -6.0185 0.0005 14 8 3.9176 -5.7967 0.0000 15 7 2.2749 -7.2892 0.0015 16 6 3.1842 -8.3528 0.0015 17 6 4.5844 -8.2415 0.0000 18 6 5.1000 -9.4914 0.0000 19 7 4.0704 -10.3643 0.0009 20 6 4.1807 -11.8251 0.0017 21 6 5.3981 -12.2442 0.8284 22 6 5.5130 -13.7699 0.8298 23 6 5.6753 -14.2704 -0.6069 24 6 4.4578 -13.8513 -1.4336 25 6 4.3433 -12.3251 -1.4351 26 7 2.8780 -9.6293 0.0020 27 1 -0.4851 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6240 -2.5568 0.8903 30 1 3.1566 -3.4355 0.0009 31 1 1.3212 -7.4665 0.0023 32 1 5.1490 -7.3208 -0.0010 33 1 6.1495 -9.7462 -0.0014 34 1 3.2797 -12.2574 0.4370 35 1 6.2990 -11.8120 0.3930 36 1 5.2822 -11.8880 1.8520 37 1 4.6119 -14.2017 1.2654 38 1 6.3805 -14.0683 1.4183 39 1 5.7575 -15.3574 -0.6059 40 1 6.5763 -13.8385 -1.0425 41 1 3.5568 -14.2832 -0.9979 42 1 4.5732 -14.2083 -2.4570 43 1 3.4760 -12.0266 -2.0240 44 1 5.2443 -11.8930 -1.8705 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344017792.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:58 Heat of formation + Delta-G solvation = -24.718250 kcal Electronic energy + Delta-G solvation = -25736.346600 eV Core-core repulsion = 21882.077284 eV Total energy + Delta-G solvation = -3854.269317 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.66265 -41.59218 -39.78273 -39.12955 -36.75977 -35.89418 -34.37746 -33.37039 -31.84694 -31.10762 -29.93095 -29.26064 -26.58363 -24.50659 -24.04921 -23.54987 -22.45569 -21.74102 -21.29582 -20.48359 -19.75830 -18.52674 -18.20450 -17.80077 -17.24002 -16.92134 -16.86385 -16.35645 -16.04643 -15.93530 -15.40706 -15.13057 -14.96187 -14.93055 -14.50594 -14.10493 -14.06410 -13.94515 -13.81421 -13.52774 -13.21180 -13.00834 -12.73576 -12.70625 -12.37400 -12.20468 -12.11923 -12.07976 -11.86694 -11.52247 -11.51209 -11.34770 -11.10983 -10.83911 -10.74994 -10.07652 -9.97905 -9.34723 -8.30228 -6.46335 0.02656 0.79405 0.90716 1.45459 1.47054 1.58231 1.67536 1.68066 2.20917 2.37242 2.65561 3.05293 3.37096 3.42943 3.67626 3.79423 3.92779 3.99601 4.19905 4.24324 4.31296 4.46134 4.47833 4.49759 4.63690 4.72541 4.85062 4.92739 5.00447 5.03484 5.05434 5.16143 5.17588 5.18020 5.24569 5.31800 5.34753 5.50045 5.51429 5.57125 5.77074 5.81139 6.09841 6.35071 6.57296 6.68457 6.69567 6.97598 7.26423 8.81388 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.043753 B = 0.001900 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.803588 B =14737.115080 C =15079.591622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.983 3.017 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.561 4.561 8 H 0.082 0.918 9 C 0.262 3.738 10 N -0.668 5.668 11 C 0.500 3.500 12 O -0.557 6.557 13 C 0.532 3.468 14 O -0.501 6.501 15 N -0.605 5.605 16 C 0.275 3.725 17 C -0.294 4.294 18 C 0.086 3.914 19 N -0.354 5.354 20 C 0.160 3.840 21 C -0.124 4.124 22 C -0.111 4.111 23 C -0.121 4.121 24 C -0.113 4.113 25 C -0.125 4.125 26 N -0.343 5.343 27 H 0.270 0.730 28 H 0.007 0.993 29 H 0.007 0.993 30 H 0.415 0.585 31 H 0.430 0.570 32 H 0.163 0.837 33 H 0.218 0.782 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.052 0.948 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.522 -30.195 -0.302 33.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.191 4.191 3 Si 0.807 3.193 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.599 4.599 8 H 0.100 0.900 9 C 0.140 3.860 10 N -0.318 5.318 11 C 0.279 3.721 12 O -0.436 6.436 13 C 0.312 3.688 14 O -0.374 6.374 15 N -0.255 5.255 16 C 0.021 3.979 17 C -0.324 4.324 18 C -0.061 4.061 19 N -0.137 5.137 20 C 0.060 3.940 21 C -0.162 4.162 22 C -0.150 4.150 23 C -0.159 4.159 24 C -0.151 4.151 25 C -0.164 4.164 26 N -0.173 5.173 27 H 0.079 0.921 28 H 0.024 0.976 29 H 0.025 0.975 30 H 0.252 0.748 31 H 0.268 0.732 32 H 0.180 0.820 33 H 0.234 0.766 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 14.421 -30.960 -0.295 34.155 hybrid contribution 0.055 1.726 -0.062 1.728 sum 14.476 -29.233 -0.357 32.623 Atomic orbital electron populations 1.70103 1.08000 1.28713 1.49533 1.25973 0.95807 1.03597 0.93706 0.85171 0.78464 0.77094 0.78600 1.19617 1.20753 1.18264 1.21573 0.94367 0.90445 1.53525 0.90014 1.18881 0.88345 0.83018 0.95752 1.46111 1.12590 1.04530 1.68555 1.19928 0.88079 0.84666 0.79378 1.90734 1.17077 1.84923 1.50896 1.19998 0.88419 0.83276 0.77097 1.90665 1.15995 1.84338 1.46386 1.42129 1.10831 1.02387 1.70122 1.19293 0.90410 0.87187 1.00997 1.21922 0.91630 1.00017 1.18863 1.23014 0.96504 0.87984 0.98602 1.48753 1.01972 1.06777 1.56181 1.21651 1.01706 0.72283 0.98364 1.21947 0.96288 0.98294 0.99703 1.21498 1.03254 0.92575 0.97628 1.21605 0.97940 1.01604 0.94737 1.21514 0.99405 0.92722 1.01446 1.21959 1.02492 0.97777 0.94168 1.77310 1.07355 1.01495 1.31141 0.92076 0.97556 0.97528 0.74806 0.73188 0.81978 0.76572 0.88708 0.89400 0.91153 0.91489 0.89701 0.90516 0.91154 0.91508 0.90622 0.92936 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.43 13.29 21.45 0.28 -54.14 16 2 C 0.01 0.52 5.46 84.66 0.46 0.98 16 3 Si 0.98 42.16 29.54 68.60 2.03 44.19 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 6 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.56 -30.35 9.28 25.60 0.24 -30.11 16 8 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 9 C 0.26 14.02 5.43 85.63 0.46 14.48 16 10 N -0.67 -29.31 5.54 -468.24 -2.59 -31.90 16 11 C 0.50 20.71 7.89 87.24 0.69 21.39 16 12 O -0.56 -25.80 16.48 -3.28 -0.05 -25.86 16 13 C 0.53 18.76 7.85 87.24 0.69 19.45 16 14 O -0.50 -17.97 13.60 -3.34 -0.05 -18.02 16 15 N -0.61 -19.22 5.43 -308.89 -1.68 -20.90 16 16 C 0.28 8.37 8.10 133.40 1.08 9.45 16 17 C -0.29 -7.93 9.60 22.11 0.21 -7.72 16 18 C 0.09 1.64 10.58 83.51 0.88 2.52 16 19 N -0.35 -7.29 3.53 -327.55 -1.15 -8.45 16 20 C 0.16 2.14 3.20 44.99 0.14 2.28 16 21 C -0.12 -0.97 4.84 30.60 0.15 -0.82 16 22 C -0.11 -0.55 5.92 30.59 0.18 -0.37 16 23 C -0.12 -0.56 5.92 30.60 0.18 -0.38 16 24 C -0.11 -0.81 5.93 30.61 0.18 -0.63 16 25 C -0.13 -1.44 5.53 30.61 0.17 -1.27 16 26 N -0.34 -9.74 12.59 -54.53 -0.69 -10.42 16 27 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 28 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.42 16.44 7.79 -92.71 -0.72 15.71 16 31 H 0.43 12.89 8.29 -92.71 -0.77 12.12 16 32 H 0.16 4.70 5.91 -2.91 -0.02 4.69 16 33 H 0.22 2.05 7.25 -2.91 -0.02 2.02 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.09 0.47 7.15 -2.39 -0.02 0.45 16 36 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.08 0.25 8.14 -2.38 -0.02 0.23 16 40 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.08 0.48 8.14 -2.39 -0.02 0.47 16 43 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 44 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -69.63 366.84 1.36 -68.26 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: -0.45 Total: 27.97 kcal Atomic # 6 Polarization: 23.55 SS G_CDS: 5.72 Total: 29.27 kcal Atomic # 7 Polarization: -119.99 SS G_CDS: -5.83 Total: -125.82 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -0.10 Total: -43.88 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -69.63 1.36 -68.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344017792.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.544 kcal (2) G-P(sol) polarization free energy of solvation -69.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds