Wall clock time and date at job start Tue Mar 31 2020 12:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00169 * 2 1 4 4 H 1.48503 * 109.47412 * 269.99687 * 3 2 1 5 5 H 1.48500 * 109.47151 * 29.99979 * 3 2 1 6 6 H 1.48507 * 109.47410 * 149.99433 * 3 2 1 7 7 C 1.37879 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00253 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00032 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47119 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46999 * 180.02562 * 10 9 7 12 12 C 1.52991 * 109.47118 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47244 * 179.97438 * 12 11 10 14 14 O 1.21287 * 120.00090 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00129 * 179.97438 * 13 12 11 16 16 C 1.46508 * 120.00162 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47159 * 180.02562 * 16 15 13 18 18 N 1.46498 * 109.46777 * 180.02562 * 17 16 15 19 19 C 1.34776 * 119.99780 * 180.02562 * 18 17 16 20 20 O 1.21515 * 120.00160 * 359.97438 * 19 18 17 21 21 C 1.48148 * 120.00017 * 180.02562 * 19 18 17 22 22 C 1.39443 * 120.09698 * 180.02562 * 21 19 18 23 23 N 1.32079 * 119.87260 * 179.97438 * 22 21 19 24 24 C 1.32142 * 120.07304 * 359.97438 * 23 22 21 25 25 C 1.38724 * 120.19178 * 0.28422 * 24 23 22 26 26 N 1.31797 * 120.12804 * 359.43155 * 25 24 23 27 27 H 0.97003 * 120.00000 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46571 * 60.00072 * 9 7 2 29 29 H 1.09003 * 109.46736 * 300.00185 * 9 7 2 30 30 H 1.08993 * 109.47441 * 59.99694 * 10 9 7 31 31 H 1.09002 * 109.46598 * 299.99923 * 10 9 7 32 32 H 1.09006 * 109.47246 * 59.99263 * 11 10 9 33 33 H 1.09003 * 109.46580 * 299.99791 * 11 10 9 34 34 H 1.09006 * 109.47661 * 59.99520 * 12 11 10 35 35 H 1.09003 * 109.47227 * 299.99398 * 12 11 10 36 36 H 0.96998 * 120.00435 * 359.97438 * 15 13 12 37 37 H 1.09001 * 109.46861 * 60.00409 * 16 15 13 38 38 H 1.08995 * 109.47058 * 300.00828 * 16 15 13 39 39 H 1.09001 * 109.46959 * 60.00397 * 17 16 15 40 40 H 1.09002 * 109.46922 * 300.00350 * 17 16 15 41 41 H 0.97003 * 120.00291 * 359.97438 * 18 17 16 42 42 H 1.07999 * 120.06715 * 359.94846 * 22 21 19 43 43 H 1.08002 * 119.90049 * 180.02562 * 24 23 22 44 44 H 1.08008 * 119.93444 * 179.69733 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0018 11 6 1.4802 -4.9872 0.0012 12 6 2.4743 -6.1500 0.0018 13 6 1.7208 -7.4551 0.0018 14 8 0.5079 -7.4551 0.0018 15 7 2.3947 -8.6223 0.0018 16 6 1.6621 -9.8911 0.0024 17 6 2.6564 -11.0541 0.0029 18 7 1.9238 -12.3227 0.0029 19 6 2.5976 -13.4899 0.0038 20 8 3.8128 -13.4900 0.0042 21 6 1.8569 -14.7729 0.0032 22 6 2.5520 -15.9817 0.0047 23 7 1.8871 -17.1230 0.0046 24 6 0.5657 -17.1194 0.0037 25 6 -0.1287 -15.9185 -0.0032 26 7 0.5269 -14.7752 0.0024 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6239 -2.5567 0.8903 30 1 2.8712 -3.6041 0.8922 31 1 2.8725 -3.6048 -0.8877 32 1 0.8544 -5.0450 -0.8895 33 1 0.8526 -5.0447 0.8905 34 1 3.1005 -6.0924 0.8922 35 1 3.1016 -6.0923 -0.8878 36 1 3.3646 -8.6224 0.0014 37 1 1.0352 -9.9491 -0.8874 38 1 1.0357 -9.9486 0.8925 39 1 3.2830 -10.9959 0.8929 40 1 3.2830 -10.9967 -0.8871 41 1 0.9538 -12.3227 0.0029 42 1 3.6320 -15.9849 0.0055 43 1 0.0248 -18.0543 0.0040 44 1 -1.2088 -15.9205 -0.0090 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350000692.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:19 Heat of formation + Delta-G solvation = -46.168368 kcal Electronic energy + Delta-G solvation = -24225.651056 eV Core-core repulsion = 20370.451592 eV Total energy + Delta-G solvation = -3855.199464 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.91093 -40.06339 -39.59924 -36.41544 -35.21768 -34.87761 -34.17782 -32.62856 -32.43455 -30.30422 -29.02254 -26.28236 -25.54352 -25.11410 -23.35086 -22.18059 -21.62014 -20.31240 -19.96949 -18.93997 -18.28441 -17.49193 -16.88562 -16.56052 -16.47545 -16.17003 -15.90287 -15.63484 -15.47105 -15.31263 -14.53001 -14.46805 -14.43538 -13.75623 -13.66410 -13.53276 -12.61942 -12.51920 -12.43604 -12.29433 -12.04156 -11.96304 -11.69275 -11.58965 -11.05061 -10.97691 -10.53819 -10.49945 -10.40694 -10.19991 -9.93713 -9.83191 -9.72003 -9.60811 -9.30967 -9.22141 -8.97619 -8.29626 -5.94467 -3.96955 -0.32310 0.31658 2.06953 2.19665 2.65980 3.06783 3.08759 3.34394 3.34705 3.40776 3.43980 3.49071 3.72030 4.07931 4.20740 4.42298 4.49744 4.51116 4.57159 4.80881 4.85159 4.94517 5.30468 5.33402 5.40595 5.41765 5.43384 5.53066 5.70742 5.85557 6.13940 6.16253 6.30415 6.35435 6.54797 6.73501 6.84323 6.97720 7.02158 7.20403 7.32095 7.47341 7.74993 7.90919 8.06910 8.17897 8.48783 9.10775 9.66728 11.16845 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.051107 B = 0.001348 C = 0.001316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.739518 B =20763.872228 C =21269.954520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.111 4.111 11 C -0.104 4.104 12 C -0.138 4.138 13 C 0.514 3.486 14 O -0.533 6.533 15 N -0.737 5.737 16 C 0.108 3.892 17 C 0.107 3.893 18 N -0.705 5.705 19 C 0.579 3.421 20 O -0.524 6.524 21 C 0.027 3.973 22 C 0.112 3.888 23 N -0.439 5.439 24 C 0.075 3.925 25 C 0.052 3.948 26 N -0.412 5.412 27 H 0.260 0.740 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.403 0.597 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.415 0.585 42 H 0.184 0.816 43 H 0.179 0.821 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.134 -36.819 0.000 36.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.178 4.178 13 C 0.302 3.698 14 O -0.408 6.408 15 N -0.392 5.392 16 C -0.017 4.017 17 C -0.017 4.017 18 N -0.358 5.358 19 C 0.362 3.638 20 O -0.399 6.399 21 C -0.114 4.114 22 C -0.048 4.048 23 N -0.153 5.153 24 C -0.086 4.086 25 C -0.110 4.110 26 N -0.130 5.130 27 H 0.069 0.931 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.237 0.763 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.251 0.749 42 H 0.201 0.799 43 H 0.196 0.804 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 3.010 -36.637 0.010 36.761 hybrid contribution 0.290 0.824 -0.011 0.873 sum 3.300 -35.813 -0.002 35.965 Atomic orbital electron populations 1.69976 1.06051 1.26488 1.50949 1.25035 0.94830 0.99212 0.95447 0.86615 0.79834 0.83608 0.78046 1.20716 1.21257 1.19919 1.21291 0.92995 0.91216 1.50406 0.92748 1.19102 0.94072 0.91282 0.97320 1.21652 0.99087 0.93981 1.00109 1.21459 0.97025 0.92715 1.02979 1.21799 1.00115 0.91707 1.04163 1.21142 0.88446 0.85414 0.74801 1.90720 1.14244 1.87587 1.48244 1.45893 1.10412 1.05141 1.77718 1.21339 0.94453 0.82460 1.03420 1.21548 0.94754 0.81640 1.03741 1.45595 1.11502 1.04838 1.73820 1.17579 0.86544 0.82668 0.77017 1.90841 1.12546 1.86933 1.49560 1.22125 0.91128 0.95734 1.02391 1.23891 1.02663 0.86927 0.91283 1.68673 1.08942 1.28885 1.08845 1.24198 0.91097 1.00363 0.92912 1.23913 1.02379 0.88226 0.96520 1.68334 1.07497 1.30734 1.06444 0.93062 0.96585 0.96579 0.93438 0.93452 0.91791 0.91784 0.88979 0.88975 0.76283 0.90733 0.90740 0.90152 0.90156 0.74886 0.79871 0.80427 0.80237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 11 C -0.10 -1.82 4.50 -26.74 -0.12 -1.94 16 12 C -0.14 -1.74 5.70 -27.89 -0.16 -1.90 16 13 C 0.51 6.70 7.83 -10.99 -0.09 6.61 16 14 O -0.53 -9.28 15.98 5.55 0.09 -9.19 16 15 N -0.74 -6.44 5.56 -60.29 -0.33 -6.78 16 16 C 0.11 0.83 5.79 -4.04 -0.02 0.81 16 17 C 0.11 0.68 5.79 -4.04 -0.02 0.66 16 18 N -0.71 -4.76 5.55 -61.15 -0.34 -5.10 16 19 C 0.58 4.86 7.81 -12.19 -0.10 4.77 16 20 O -0.52 -5.73 16.35 5.35 0.09 -5.64 16 21 C 0.03 0.20 6.75 -82.84 -0.56 -0.36 16 22 C 0.11 0.77 10.77 -17.00 -0.18 0.58 16 23 N -0.44 -2.85 10.49 -12.71 -0.13 -2.98 16 24 C 0.08 0.27 11.23 -17.24 -0.19 0.08 16 25 C 0.05 0.19 11.22 -17.39 -0.20 -0.01 16 26 N -0.41 -2.57 9.71 -9.61 -0.09 -2.66 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 33 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.40 2.35 8.47 -40.82 -0.35 2.01 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.41 2.36 7.82 -40.82 -0.32 2.04 16 42 H 0.18 1.09 7.65 -52.49 -0.40 0.69 16 43 H 0.18 0.02 8.06 -52.49 -0.42 -0.41 16 44 H 0.18 0.04 8.06 -52.48 -0.42 -0.38 16 LS Contribution 383.61 15.07 5.78 5.78 Total: -1.00 -37.51 383.61 -8.08 -45.58 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -6.52 Total: -2.59 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -2.33 Total: -6.53 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -0.16 Total: -44.30 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.18 Total: -14.83 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.51 -8.08 -45.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350000692.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.586 kcal (2) G-P(sol) polarization free energy of solvation -37.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds