Wall clock time and date at job start Tue Mar 31 2020 12:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00169 * 2 1 4 4 H 1.48503 * 109.47412 * 269.99687 * 3 2 1 5 5 H 1.48500 * 109.47151 * 29.99979 * 3 2 1 6 6 H 1.48507 * 109.47410 * 149.99433 * 3 2 1 7 7 C 1.37879 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00253 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00032 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47119 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46999 * 180.02562 * 10 9 7 12 12 C 1.52991 * 109.47118 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47244 * 179.97438 * 12 11 10 14 14 O 1.21287 * 120.00090 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00129 * 179.97438 * 13 12 11 16 16 C 1.46508 * 120.00162 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47159 * 180.02562 * 16 15 13 18 18 N 1.46498 * 109.46777 * 180.02562 * 17 16 15 19 19 C 1.34776 * 119.99780 * 180.02562 * 18 17 16 20 20 O 1.21515 * 120.00160 * 359.97438 * 19 18 17 21 21 C 1.48148 * 120.00017 * 180.02562 * 19 18 17 22 22 C 1.39443 * 120.09698 * 180.02562 * 21 19 18 23 23 N 1.32079 * 119.87260 * 179.97438 * 22 21 19 24 24 C 1.32142 * 120.07304 * 359.97438 * 23 22 21 25 25 C 1.38724 * 120.19178 * 0.28422 * 24 23 22 26 26 N 1.31797 * 120.12804 * 359.43155 * 25 24 23 27 27 H 0.97003 * 120.00000 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46571 * 60.00072 * 9 7 2 29 29 H 1.09003 * 109.46736 * 300.00185 * 9 7 2 30 30 H 1.08993 * 109.47441 * 59.99694 * 10 9 7 31 31 H 1.09002 * 109.46598 * 299.99923 * 10 9 7 32 32 H 1.09006 * 109.47246 * 59.99263 * 11 10 9 33 33 H 1.09003 * 109.46580 * 299.99791 * 11 10 9 34 34 H 1.09006 * 109.47661 * 59.99520 * 12 11 10 35 35 H 1.09003 * 109.47227 * 299.99398 * 12 11 10 36 36 H 0.96998 * 120.00435 * 359.97438 * 15 13 12 37 37 H 1.09001 * 109.46861 * 60.00409 * 16 15 13 38 38 H 1.08995 * 109.47058 * 300.00828 * 16 15 13 39 39 H 1.09001 * 109.46959 * 60.00397 * 17 16 15 40 40 H 1.09002 * 109.46922 * 300.00350 * 17 16 15 41 41 H 0.97003 * 120.00291 * 359.97438 * 18 17 16 42 42 H 1.07999 * 120.06715 * 359.94846 * 22 21 19 43 43 H 1.08002 * 119.90049 * 180.02562 * 24 23 22 44 44 H 1.08008 * 119.93444 * 179.69733 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0018 11 6 1.4802 -4.9872 0.0012 12 6 2.4743 -6.1500 0.0018 13 6 1.7208 -7.4551 0.0018 14 8 0.5079 -7.4551 0.0018 15 7 2.3947 -8.6223 0.0018 16 6 1.6621 -9.8911 0.0024 17 6 2.6564 -11.0541 0.0029 18 7 1.9238 -12.3227 0.0029 19 6 2.5976 -13.4899 0.0038 20 8 3.8128 -13.4900 0.0042 21 6 1.8569 -14.7729 0.0032 22 6 2.5520 -15.9817 0.0047 23 7 1.8871 -17.1230 0.0046 24 6 0.5657 -17.1194 0.0037 25 6 -0.1287 -15.9185 -0.0032 26 7 0.5269 -14.7752 0.0024 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6239 -2.5567 0.8903 30 1 2.8712 -3.6041 0.8922 31 1 2.8725 -3.6048 -0.8877 32 1 0.8544 -5.0450 -0.8895 33 1 0.8526 -5.0447 0.8905 34 1 3.1005 -6.0924 0.8922 35 1 3.1016 -6.0923 -0.8878 36 1 3.3646 -8.6224 0.0014 37 1 1.0352 -9.9491 -0.8874 38 1 1.0357 -9.9486 0.8925 39 1 3.2830 -10.9959 0.8929 40 1 3.2830 -10.9967 -0.8871 41 1 0.9538 -12.3227 0.0029 42 1 3.6320 -15.9849 0.0055 43 1 0.0248 -18.0543 0.0040 44 1 -1.2088 -15.9205 -0.0090 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350000692.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:18 Heat of formation + Delta-G solvation = -75.729728 kcal Electronic energy + Delta-G solvation = -24226.932932 eV Core-core repulsion = 20370.451592 eV Total energy + Delta-G solvation = -3856.481340 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.32963 -40.88294 -40.39860 -37.21280 -36.54798 -35.67038 -34.91819 -34.58517 -32.86009 -31.71246 -30.07884 -27.49496 -26.47625 -25.60724 -24.45772 -23.39819 -22.28753 -21.73593 -21.22318 -19.47639 -18.73152 -18.40913 -17.93994 -17.72059 -17.25459 -17.16472 -16.77604 -16.53191 -16.34218 -16.09966 -15.91421 -15.44327 -14.98896 -14.83052 -14.74910 -14.51259 -13.89567 -13.76906 -13.57126 -13.26536 -12.97950 -12.92164 -12.82867 -12.78557 -12.44811 -12.33117 -12.13650 -12.10237 -11.69696 -11.35475 -11.34418 -11.16175 -10.80609 -10.62255 -10.53797 -10.29672 -10.26256 -10.14196 -8.17717 -6.29788 -0.73518 -0.06063 1.41232 1.43315 1.52817 1.54360 1.58604 1.64801 2.37308 2.43449 2.66806 2.88431 3.15152 3.16181 3.34454 3.54778 3.75182 3.89157 3.97571 4.05812 4.09583 4.18457 4.28595 4.35451 4.50276 4.66420 4.70874 4.78383 4.82338 4.88336 4.90973 5.11909 5.22065 5.22878 5.34746 5.35272 5.43532 5.59160 5.80165 5.89690 5.97051 6.22048 6.26726 6.52038 6.57641 6.88803 6.89339 7.25534 7.39916 8.94456 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.051107 B = 0.001348 C = 0.001316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.739518 B =20763.872228 C =21269.954520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.018 3.982 10 C -0.097 4.097 11 C -0.097 4.097 12 C -0.128 4.128 13 C 0.514 3.486 14 O -0.586 6.586 15 N -0.716 5.716 16 C 0.113 3.887 17 C 0.116 3.884 18 N -0.699 5.699 19 C 0.578 3.422 20 O -0.556 6.556 21 C 0.008 3.992 22 C 0.101 3.899 23 N -0.463 5.463 24 C 0.085 3.915 25 C 0.057 3.943 26 N -0.427 5.427 27 H 0.262 0.738 28 H -0.015 1.015 29 H -0.015 1.015 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.421 0.579 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.420 0.580 42 H 0.181 0.819 43 H 0.217 0.783 44 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.421 -37.912 -0.005 38.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.183 1.183 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.020 4.020 10 C -0.134 4.134 11 C -0.135 4.135 12 C -0.168 4.168 13 C 0.302 3.698 14 O -0.465 6.465 15 N -0.371 5.371 16 C -0.012 4.012 17 C -0.007 4.007 18 N -0.351 5.351 19 C 0.362 3.638 20 O -0.434 6.434 21 C -0.131 4.131 22 C -0.057 4.057 23 N -0.177 5.177 24 C -0.076 4.076 25 C -0.106 4.106 26 N -0.145 5.145 27 H 0.071 0.929 28 H 0.003 0.997 29 H 0.003 0.997 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.258 0.742 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.257 0.743 42 H 0.198 0.802 43 H 0.233 0.767 44 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 4.364 -37.744 0.004 37.996 hybrid contribution -0.247 1.046 -0.011 1.075 sum 4.117 -36.698 -0.007 36.928 Atomic orbital electron populations 1.70131 1.08051 1.27707 1.51899 1.26069 0.95755 1.03659 0.94769 0.85399 0.78692 0.78141 0.78508 1.19736 1.20947 1.18346 1.21773 0.93765 0.92286 1.50250 0.91595 1.19070 0.94732 0.93813 0.94342 1.21455 0.97822 0.92798 1.01340 1.21252 0.97542 0.93650 1.01069 1.21676 0.98926 0.89276 1.06901 1.21167 0.87729 0.86545 0.74310 1.90711 1.16437 1.88315 1.51061 1.45658 1.11349 1.04389 1.75676 1.21312 0.94591 0.82263 1.02995 1.21456 0.94221 0.80887 1.04185 1.45564 1.11798 1.04635 1.73077 1.17784 0.86261 0.83358 0.76395 1.90812 1.13837 1.87453 1.51328 1.21909 0.91729 0.95119 1.04328 1.23875 1.02810 0.87197 0.91818 1.68702 1.10527 1.28676 1.09843 1.24892 0.90230 1.02052 0.90450 1.24595 1.03982 0.87397 0.94628 1.68332 1.06975 1.32187 1.06999 0.92886 0.99682 0.99679 0.92065 0.92055 0.93833 0.93834 0.86179 0.86167 0.74170 0.91212 0.91220 0.89700 0.89703 0.74258 0.80178 0.76650 0.76576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.98 13.29 21.45 0.28 -58.69 16 2 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 3 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 7 C -0.54 -31.50 9.11 25.60 0.23 -31.26 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.02 0.96 4.97 29.85 0.15 1.11 16 10 C -0.10 -3.90 5.15 30.59 0.16 -3.74 16 11 C -0.10 -3.42 4.50 30.59 0.14 -3.28 16 12 C -0.13 -2.95 5.70 29.84 0.17 -2.78 16 13 C 0.51 12.79 7.83 87.66 0.69 13.48 16 14 O -0.59 -20.66 15.98 -3.05 -0.05 -20.70 16 15 N -0.72 -11.17 5.56 -463.04 -2.57 -13.74 16 16 C 0.11 1.62 5.79 86.38 0.50 2.12 16 17 C 0.12 1.35 5.79 86.38 0.50 1.85 16 18 N -0.70 -9.12 5.55 -465.68 -2.58 -11.70 16 19 C 0.58 9.81 7.81 86.88 0.68 10.49 16 20 O -0.56 -12.46 16.35 -3.76 -0.06 -12.52 16 21 C 0.01 0.12 6.75 41.89 0.28 0.40 16 22 C 0.10 1.42 10.77 84.95 0.92 2.33 16 23 N -0.46 -5.60 10.49 -194.12 -2.04 -7.64 16 24 C 0.09 0.42 11.23 84.76 0.95 1.38 16 25 C 0.06 0.28 11.22 84.81 0.95 1.23 16 26 N -0.43 -4.86 9.71 -184.33 -1.79 -6.65 16 27 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 28 H -0.02 -0.92 8.14 -2.39 -0.02 -0.93 16 29 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 30 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.04 1.68 8.10 -2.38 -0.02 1.67 16 33 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 34 H 0.12 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.42 3.68 8.47 -92.71 -0.79 2.90 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.42 4.58 7.82 -92.71 -0.73 3.85 16 42 H 0.18 2.38 7.65 -2.91 -0.02 2.36 16 43 H 0.22 -0.77 8.06 -2.91 -0.02 -0.79 16 44 H 0.22 -0.71 8.06 -2.91 -0.02 -0.73 16 Total: -1.00 -84.85 383.61 -0.49 -85.35 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -0.49 Total: 6.04 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 6.78 Total: -6.54 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -8.70 Total: -98.43 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -0.11 Total: -33.22 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -84.85 -0.49 -85.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350000692.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.616 kcal (2) G-P(sol) polarization free energy of solvation -84.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds