Wall clock time and date at job start Tue Mar 31 2020 12:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86789 * 120.00217 * 2 1 4 4 H 1.48507 * 109.47355 * 269.99798 * 3 2 1 5 5 H 1.48504 * 109.47263 * 29.99706 * 3 2 1 6 6 H 1.48500 * 109.47278 * 149.99991 * 3 2 1 7 7 C 1.37883 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00252 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99999 * 180.02562 * 7 2 1 10 10 H 1.08998 * 109.50083 * 60.05546 * 9 7 2 11 11 C 1.53035 * 109.52601 * 180.14545 * 9 7 2 12 12 C 1.53042 * 109.53845 * 181.32889 * 11 9 7 13 13 C 1.53619 * 109.24556 * 298.51055 * 12 11 9 14 14 N 1.46928 * 108.54183 * 54.85037 * 13 12 11 15 15 C 1.34786 * 120.62521 * 126.37328 * 14 13 12 16 16 O 1.21352 * 119.99578 * 188.42787 * 15 14 13 17 17 C 1.49446 * 120.00128 * 8.42560 * 15 14 13 18 18 O 1.21353 * 120.00022 * 6.74416 * 17 15 14 19 19 N 1.34782 * 119.99874 * 186.74673 * 17 15 14 20 20 C 1.46499 * 119.99897 * 180.02562 * 19 17 15 21 21 C 1.52998 * 109.46911 * 179.97438 * 20 19 17 22 22 N 1.46499 * 109.46911 * 180.02562 * 21 20 19 23 23 C 1.34942 * 126.03902 * 124.71623 * 22 21 20 24 24 C 1.35318 * 107.74805 * 179.83997 * 23 22 21 25 25 C 1.39867 * 107.92251 * 0.42266 * 24 23 22 26 26 N 1.30838 * 108.19893 * 359.74209 * 25 24 23 27 27 C 1.46919 * 118.74398 * 306.10247 * 14 13 12 28 28 H 0.97007 * 120.00043 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.45842 * 301.34824 * 11 9 7 30 30 H 1.08994 * 109.46100 * 61.32346 * 11 9 7 31 31 H 1.09004 * 109.49518 * 58.58642 * 12 11 9 32 32 H 1.09002 * 109.49565 * 178.67877 * 12 11 9 33 33 H 1.09002 * 109.73594 * 295.12147 * 13 12 11 34 34 H 1.08996 * 109.67130 * 174.54750 * 13 12 11 35 35 H 0.97001 * 120.00065 * 359.97438 * 19 17 15 36 36 H 1.09004 * 109.46966 * 300.00205 * 20 19 17 37 37 H 1.08997 * 109.47252 * 59.99718 * 20 19 17 38 38 H 1.08993 * 109.47233 * 300.00037 * 21 20 19 39 39 H 1.09001 * 109.47138 * 60.00688 * 21 20 19 40 40 H 1.08000 * 126.12788 * 0.02562 * 23 22 21 41 41 H 1.08001 * 126.03811 * 180.16101 * 24 23 22 42 42 H 1.07992 * 125.90367 * 179.71388 * 25 24 23 43 43 H 1.08998 * 109.58788 * 173.64959 * 27 14 13 44 44 H 1.09009 * 109.58413 * 294.07047 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1295 0.0014 9 6 3.5114 -1.1942 0.0011 10 1 3.8750 -0.6812 0.8914 11 6 4.0229 -2.6366 -0.0020 12 6 5.5529 -2.6372 0.0320 13 6 6.0876 -1.9323 -1.2238 14 7 5.4865 -0.5938 -1.3000 15 6 6.2627 0.5017 -1.4195 16 8 5.7703 1.6070 -1.3279 17 6 7.7296 0.3550 -1.6647 18 8 8.2024 -0.7421 -1.8780 19 7 8.5274 1.4412 -1.6488 20 6 9.9653 1.2975 -1.8898 21 6 10.6343 2.6716 -1.8177 22 7 12.0721 2.5279 -2.0592 23 6 12.7873 3.1761 -3.0022 24 6 14.0738 2.7702 -2.8956 25 6 14.1455 1.8349 -1.8582 26 7 12.9462 1.6888 -1.3561 27 6 4.0232 -0.4725 -1.2495 28 1 -0.4850 0.8401 -0.0004 29 1 3.6399 -3.1595 0.8743 30 1 3.6798 -3.1415 -0.9049 31 1 5.8972 -2.1106 0.9222 32 1 5.9159 -3.6648 0.0534 33 1 5.8171 -2.5053 -2.1108 34 1 7.1720 -1.8429 -1.1607 35 1 8.1494 2.3182 -1.4787 36 1 10.3969 0.6426 -1.1327 37 1 10.1269 0.8664 -2.8778 38 1 10.2026 3.3260 -2.5749 39 1 10.4728 3.1029 -0.8298 40 1 12.4026 3.8929 -3.7125 41 1 14.8986 3.1058 -3.5068 42 1 15.0367 1.3216 -1.5287 43 1 3.7452 0.5805 -1.2033 44 1 3.5878 -0.9288 -2.1386 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350692243.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:26 Heat of formation + Delta-G solvation = 32.616704 kcal Electronic energy + Delta-G solvation = -26710.457958 eV Core-core repulsion = 22858.674871 eV Total energy + Delta-G solvation = -3851.783087 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.52806 -40.80161 -38.73943 -37.20383 -36.11854 -33.58748 -33.13754 -31.96649 -30.57967 -30.53465 -29.03559 -26.22354 -25.18868 -24.28600 -22.45110 -21.99709 -21.48496 -21.15716 -20.26147 -19.12062 -17.79944 -17.42480 -16.86931 -16.73693 -16.34433 -15.99135 -15.42770 -15.16958 -14.60025 -14.48110 -14.31365 -14.19813 -13.88826 -13.60329 -13.55221 -13.16256 -13.15308 -12.78671 -12.64403 -12.59050 -12.20199 -12.14943 -11.75821 -11.10858 -11.03129 -10.93960 -10.56976 -10.40564 -10.15790 -9.85618 -9.79219 -9.58077 -9.50155 -9.17649 -9.03282 -8.87753 -8.65609 -8.20418 -6.13950 -4.15547 1.46881 1.47728 1.84998 2.48493 2.53119 3.28260 3.32195 3.40572 3.51619 3.62280 3.93436 4.19932 4.37897 4.38196 4.44311 4.59993 4.66772 5.06931 5.17427 5.23770 5.34358 5.37233 5.41812 5.45359 5.60206 5.62406 5.77988 5.98563 6.07835 6.10172 6.24473 6.28898 6.41050 6.45189 6.54938 6.55438 6.71391 6.75458 6.88936 7.10684 7.30028 7.38748 7.55207 7.66425 7.74618 8.14420 8.45468 8.89612 9.47046 10.97950 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024514 B = 0.002676 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.914890 B =10458.954338 C =11330.414028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.879 3.121 4 H -0.274 1.274 5 H -0.295 1.295 6 H -0.261 1.261 7 C -0.515 4.515 8 H 0.078 0.922 9 C 0.006 3.994 10 H 0.032 0.968 11 C -0.103 4.103 12 C -0.136 4.136 13 C 0.071 3.929 14 N -0.569 5.569 15 C 0.496 3.504 16 O -0.531 6.531 17 C 0.515 3.485 18 O -0.507 6.507 19 N -0.705 5.705 20 C 0.108 3.892 21 C 0.124 3.876 22 N -0.373 5.373 23 C 0.056 3.944 24 C -0.274 4.274 25 C 0.046 3.954 26 N -0.292 5.292 27 C 0.098 3.902 28 H 0.265 0.735 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.129 0.871 35 H 0.414 0.586 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.175 0.825 41 H 0.148 0.852 42 H 0.184 0.816 43 H 0.080 0.920 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.963 5.195 -6.220 27.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.131 4.131 3 Si 0.709 3.291 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.186 1.186 7 C -0.553 4.553 8 H 0.097 0.903 9 C -0.014 4.014 10 H 0.050 0.950 11 C -0.140 4.140 12 C -0.174 4.174 13 C -0.051 4.051 14 N -0.300 5.300 15 C 0.278 3.722 16 O -0.409 6.409 17 C 0.297 3.703 18 O -0.383 6.383 19 N -0.360 5.360 20 C -0.016 4.016 21 C 0.001 3.999 22 N -0.156 5.156 23 C -0.090 4.090 24 C -0.304 4.304 25 C -0.140 4.140 26 N -0.113 5.113 27 C -0.022 4.022 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.146 0.854 35 H 0.251 0.749 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.124 0.876 39 H 0.114 0.886 40 H 0.192 0.808 41 H 0.166 0.834 42 H 0.201 0.799 43 H 0.098 0.902 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 24.986 4.507 -5.427 25.963 hybrid contribution 0.615 1.833 -0.694 2.054 sum 25.601 6.340 -6.121 27.075 Atomic orbital electron populations 1.69891 1.06258 1.27159 1.49875 1.25068 0.94793 0.99135 0.94136 0.86981 0.79831 0.83448 0.78832 1.20083 1.22234 1.18595 1.20958 0.88086 0.94692 1.51611 0.90345 1.19486 0.96883 0.92393 0.92621 0.95028 1.21474 0.92397 0.98560 1.01604 1.22079 0.98128 0.99745 0.97479 1.22883 1.01950 0.81765 0.98454 1.48386 1.08313 1.06270 1.67072 1.19855 0.86751 0.85564 0.80070 1.90752 1.74610 1.25063 1.50428 1.20508 0.88088 0.84280 0.77376 1.90513 1.76079 1.24594 1.47159 1.45586 1.07455 1.11150 1.71843 1.21588 0.79501 0.96707 1.03794 1.21787 0.75516 0.97945 1.04610 1.48489 1.07424 1.33208 1.26451 1.22628 0.92652 0.99131 0.94540 1.21552 0.97041 1.06320 1.05449 1.23961 0.96003 0.98196 0.95843 1.77428 1.00516 1.14023 1.19350 1.22854 0.74739 1.02755 1.01898 0.92483 0.92168 0.92442 0.92221 0.91453 0.91453 0.85357 0.74935 0.89277 0.90354 0.87603 0.88624 0.80797 0.83390 0.79889 0.90199 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.13 13.96 55.43 0.77 -26.36 16 2 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 3 Si 0.88 22.69 24.31 -169.99 -4.13 18.55 16 4 H -0.27 -7.05 6.92 56.52 0.39 -6.65 16 5 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 6 H -0.26 -6.72 6.53 56.52 0.37 -6.35 16 7 C -0.52 -14.19 9.15 -34.44 -0.32 -14.51 16 8 H 0.08 2.31 7.99 -52.48 -0.42 1.89 16 9 C 0.01 0.13 1.84 -91.65 -0.17 -0.04 16 10 H 0.03 0.78 7.20 -51.93 -0.37 0.41 16 11 C -0.10 -1.97 5.11 -26.69 -0.14 -2.11 16 12 C -0.14 -2.18 6.10 -26.39 -0.16 -2.34 16 13 C 0.07 1.15 6.01 -3.49 -0.02 1.13 16 14 N -0.57 -10.85 2.97 -173.01 -0.51 -11.37 16 15 C 0.50 9.05 7.73 -11.58 -0.09 8.96 16 16 O -0.53 -10.89 15.93 5.49 0.09 -10.80 16 17 C 0.52 7.57 7.74 -11.58 -0.09 7.48 16 18 O -0.51 -7.98 13.18 5.49 0.07 -7.90 16 19 N -0.71 -7.61 5.55 -60.73 -0.34 -7.95 16 20 C 0.11 0.98 5.86 -4.04 -0.02 0.96 16 21 C 0.12 0.79 6.62 -4.04 -0.03 0.77 16 22 N -0.37 -3.12 3.68 -61.37 -0.23 -3.34 16 23 C 0.06 0.37 11.45 -17.23 -0.20 0.17 16 24 C -0.27 -1.88 10.80 -40.01 -0.43 -2.32 16 25 C 0.05 0.38 12.03 -17.37 -0.21 0.17 16 26 N -0.29 -3.04 12.42 30.62 0.38 -2.66 16 27 C 0.10 2.17 5.12 -3.71 -0.02 2.15 16 28 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.13 2.01 4.30 -54.85 -0.24 1.78 16 35 H 0.41 3.86 7.96 -40.82 -0.33 3.54 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.11 0.40 8.07 -51.93 -0.42 -0.02 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.17 0.56 8.06 -52.49 -0.42 0.13 16 41 H 0.15 0.69 8.06 -52.49 -0.42 0.26 16 42 H 0.18 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.08 1.95 2.32 -51.93 -0.12 1.83 16 44 H 0.07 1.62 8.14 -51.92 -0.42 1.19 16 LS Contribution 357.16 15.07 5.38 5.38 Total: -1.00 -34.74 357.16 -6.64 -41.39 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.15 Total: 2.63 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -1.99 Total: 2.43 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 0.08 Total: -51.68 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: 0.16 Total: -18.70 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.13 Total: 18.55 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.74 -6.64 -41.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350692243.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.002 kcal (2) G-P(sol) polarization free energy of solvation -34.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds