Wall clock time and date at job start Tue Mar 31 2020 12:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86789 * 120.00217 * 2 1 4 4 H 1.48507 * 109.47355 * 269.99798 * 3 2 1 5 5 H 1.48504 * 109.47263 * 29.99706 * 3 2 1 6 6 H 1.48500 * 109.47278 * 149.99991 * 3 2 1 7 7 C 1.37883 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00252 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99999 * 180.02562 * 7 2 1 10 10 H 1.08998 * 109.50083 * 60.05546 * 9 7 2 11 11 C 1.53035 * 109.52601 * 180.14545 * 9 7 2 12 12 C 1.53042 * 109.53845 * 181.32889 * 11 9 7 13 13 C 1.53619 * 109.24556 * 298.51055 * 12 11 9 14 14 N 1.46928 * 108.54183 * 54.85037 * 13 12 11 15 15 C 1.34786 * 120.62521 * 126.37328 * 14 13 12 16 16 O 1.21352 * 119.99578 * 188.42787 * 15 14 13 17 17 C 1.49446 * 120.00128 * 8.42560 * 15 14 13 18 18 O 1.21353 * 120.00022 * 6.74416 * 17 15 14 19 19 N 1.34782 * 119.99874 * 186.74673 * 17 15 14 20 20 C 1.46499 * 119.99897 * 180.02562 * 19 17 15 21 21 C 1.52998 * 109.46911 * 179.97438 * 20 19 17 22 22 N 1.46499 * 109.46911 * 180.02562 * 21 20 19 23 23 C 1.34942 * 126.03902 * 124.71623 * 22 21 20 24 24 C 1.35318 * 107.74805 * 179.83997 * 23 22 21 25 25 C 1.39867 * 107.92251 * 0.42266 * 24 23 22 26 26 N 1.30838 * 108.19893 * 359.74209 * 25 24 23 27 27 C 1.46919 * 118.74398 * 306.10247 * 14 13 12 28 28 H 0.97007 * 120.00043 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.45842 * 301.34824 * 11 9 7 30 30 H 1.08994 * 109.46100 * 61.32346 * 11 9 7 31 31 H 1.09004 * 109.49518 * 58.58642 * 12 11 9 32 32 H 1.09002 * 109.49565 * 178.67877 * 12 11 9 33 33 H 1.09002 * 109.73594 * 295.12147 * 13 12 11 34 34 H 1.08996 * 109.67130 * 174.54750 * 13 12 11 35 35 H 0.97001 * 120.00065 * 359.97438 * 19 17 15 36 36 H 1.09004 * 109.46966 * 300.00205 * 20 19 17 37 37 H 1.08997 * 109.47252 * 59.99718 * 20 19 17 38 38 H 1.08993 * 109.47233 * 300.00037 * 21 20 19 39 39 H 1.09001 * 109.47138 * 60.00688 * 21 20 19 40 40 H 1.08000 * 126.12788 * 0.02562 * 23 22 21 41 41 H 1.08001 * 126.03811 * 180.16101 * 24 23 22 42 42 H 1.07992 * 125.90367 * 179.71388 * 25 24 23 43 43 H 1.08998 * 109.58788 * 173.64959 * 27 14 13 44 44 H 1.09009 * 109.58413 * 294.07047 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1295 0.0014 9 6 3.5114 -1.1942 0.0011 10 1 3.8750 -0.6812 0.8914 11 6 4.0229 -2.6366 -0.0020 12 6 5.5529 -2.6372 0.0320 13 6 6.0876 -1.9323 -1.2238 14 7 5.4865 -0.5938 -1.3000 15 6 6.2627 0.5017 -1.4195 16 8 5.7703 1.6070 -1.3279 17 6 7.7296 0.3550 -1.6647 18 8 8.2024 -0.7421 -1.8780 19 7 8.5274 1.4412 -1.6488 20 6 9.9653 1.2975 -1.8898 21 6 10.6343 2.6716 -1.8177 22 7 12.0721 2.5279 -2.0592 23 6 12.7873 3.1761 -3.0022 24 6 14.0738 2.7702 -2.8956 25 6 14.1455 1.8349 -1.8582 26 7 12.9462 1.6888 -1.3561 27 6 4.0232 -0.4725 -1.2495 28 1 -0.4850 0.8401 -0.0004 29 1 3.6399 -3.1595 0.8743 30 1 3.6798 -3.1415 -0.9049 31 1 5.8972 -2.1106 0.9222 32 1 5.9159 -3.6648 0.0534 33 1 5.8171 -2.5053 -2.1108 34 1 7.1720 -1.8429 -1.1607 35 1 8.1494 2.3182 -1.4787 36 1 10.3969 0.6426 -1.1327 37 1 10.1269 0.8664 -2.8778 38 1 10.2026 3.3260 -2.5749 39 1 10.4728 3.1029 -0.8298 40 1 12.4026 3.8929 -3.7125 41 1 14.8986 3.1058 -3.5068 42 1 15.0367 1.3216 -1.5287 43 1 3.7452 0.5805 -1.2033 44 1 3.5878 -0.9288 -2.1386 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350692243.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:25 Heat of formation + Delta-G solvation = 6.630965 kcal Electronic energy + Delta-G solvation = -26711.584784 eV Core-core repulsion = 22858.674871 eV Total energy + Delta-G solvation = -3852.909913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.18669 -41.96168 -40.05723 -38.71212 -37.04250 -35.27901 -34.10048 -33.61872 -32.28287 -31.12246 -29.77348 -27.65466 -26.95152 -25.26090 -23.67037 -23.52465 -22.06437 -21.85931 -21.41868 -20.61735 -19.07668 -18.69907 -18.43199 -17.92896 -17.36953 -17.06030 -16.53439 -16.27386 -16.17894 -15.69136 -15.49705 -15.22110 -15.08730 -14.91004 -14.77565 -14.51903 -14.24693 -14.15246 -13.76180 -13.62228 -13.31518 -13.24966 -13.05665 -12.77478 -12.53266 -12.34469 -12.14451 -11.79489 -11.62796 -11.58048 -11.33821 -11.09587 -10.81696 -10.56956 -10.43087 -10.25037 -9.76803 -9.53406 -8.38510 -6.41864 0.19264 0.89321 1.07889 1.24853 1.30901 1.42082 1.64714 1.97220 1.97740 2.21920 2.43354 2.97112 3.16391 3.37822 3.69716 3.93462 4.02014 4.10088 4.11328 4.12304 4.19875 4.37331 4.43792 4.48563 4.54524 4.61279 4.70040 4.74621 4.82167 4.91056 4.91877 5.01649 5.12428 5.17584 5.20081 5.28890 5.46599 5.57385 5.62222 5.74740 5.83324 6.11170 6.19529 6.24723 6.55974 6.66990 6.76231 6.78342 7.23565 8.77278 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024514 B = 0.002676 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.914890 B =10458.954338 C =11330.414028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.025 3.975 3 Si 0.938 3.062 4 H -0.273 1.273 5 H -0.293 1.293 6 H -0.262 1.262 7 C -0.513 4.513 8 H 0.049 0.951 9 C 0.005 3.995 10 H 0.017 0.983 11 C -0.099 4.099 12 C -0.127 4.127 13 C 0.071 3.929 14 N -0.576 5.576 15 C 0.491 3.509 16 O -0.557 6.557 17 C 0.524 3.476 18 O -0.518 6.518 19 N -0.684 5.684 20 C 0.116 3.884 21 C 0.126 3.874 22 N -0.383 5.383 23 C 0.058 3.942 24 C -0.286 4.286 25 C 0.037 3.963 26 N -0.341 5.341 27 C 0.104 3.896 28 H 0.268 0.732 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.141 0.859 35 H 0.423 0.577 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.139 0.861 39 H 0.102 0.898 40 H 0.210 0.790 41 H 0.168 0.832 42 H 0.202 0.798 43 H 0.058 0.942 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.872 5.970 -7.214 30.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.174 4.174 3 Si 0.767 3.233 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.187 1.187 7 C -0.551 4.551 8 H 0.067 0.933 9 C -0.014 4.014 10 H 0.035 0.965 11 C -0.137 4.137 12 C -0.165 4.165 13 C -0.049 4.049 14 N -0.308 5.308 15 C 0.274 3.726 16 O -0.437 6.437 17 C 0.305 3.695 18 O -0.395 6.395 19 N -0.338 5.338 20 C -0.008 4.008 21 C 0.004 3.996 22 N -0.166 5.166 23 C -0.087 4.087 24 C -0.315 4.315 25 C -0.149 4.149 26 N -0.163 5.163 27 C -0.017 4.017 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.121 0.879 33 H 0.098 0.902 34 H 0.158 0.842 35 H 0.262 0.738 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.157 0.843 39 H 0.120 0.880 40 H 0.226 0.774 41 H 0.186 0.814 42 H 0.218 0.782 43 H 0.076 0.924 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 27.945 5.291 -6.419 29.157 hybrid contribution -0.240 1.557 -0.401 1.625 sum 27.705 6.847 -6.820 29.342 Atomic orbital electron populations 1.69997 1.07646 1.28003 1.52030 1.25711 0.95309 1.02045 0.94357 0.86038 0.78442 0.80192 0.78659 1.19997 1.22058 1.18721 1.21255 0.90572 0.93328 1.49991 0.93253 1.19412 0.94093 0.95310 0.92624 0.96463 1.21412 0.95010 0.95569 1.01725 1.22038 0.95205 1.01930 0.97332 1.23091 1.02358 0.80403 0.99025 1.48383 1.07048 1.07869 1.67466 1.20463 0.88353 0.84792 0.78977 1.90728 1.75585 1.26001 1.51350 1.19767 0.86591 0.85079 0.78113 1.90502 1.75642 1.25119 1.48286 1.45459 1.07953 1.10527 1.69858 1.21588 0.77912 0.98383 1.02891 1.21886 0.74821 0.96552 1.06313 1.48627 1.07784 1.33366 1.26796 1.23267 0.92530 0.98835 0.94108 1.21913 0.98057 1.06112 1.05431 1.24429 0.96098 0.98355 0.95989 1.77364 1.01720 1.15970 1.21232 1.22381 0.77324 1.00992 1.01045 0.92303 0.92367 0.92123 0.92498 0.87870 0.90195 0.84210 0.73823 0.91014 0.90637 0.84271 0.88029 0.77369 0.81442 0.78177 0.92361 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.25 13.96 21.45 0.30 -57.95 16 2 C 0.02 1.44 5.45 84.66 0.46 1.90 16 3 Si 0.94 47.96 24.31 68.60 1.67 49.63 16 4 H -0.27 -13.81 6.92 99.48 0.69 -13.13 16 5 H -0.29 -14.72 7.11 99.48 0.71 -14.02 16 6 H -0.26 -13.30 6.53 99.48 0.65 -12.65 16 7 C -0.51 -28.87 9.15 25.60 0.23 -28.63 16 8 H 0.05 3.00 7.99 -2.91 -0.02 2.98 16 9 C 0.01 0.24 1.84 -11.46 -0.02 0.22 16 10 H 0.02 0.85 7.20 -2.39 -0.02 0.84 16 11 C -0.10 -3.71 5.11 30.62 0.16 -3.56 16 12 C -0.13 -3.74 6.10 30.82 0.19 -3.55 16 13 C 0.07 2.13 6.01 86.51 0.52 2.65 16 14 N -0.58 -21.17 2.97 -819.64 -2.43 -23.60 16 15 C 0.49 17.18 7.73 87.27 0.67 17.85 16 16 O -0.56 -22.20 15.93 -3.25 -0.05 -22.26 16 17 C 0.52 14.30 7.74 87.27 0.68 14.98 16 18 O -0.52 -15.09 13.18 -3.26 -0.04 -15.14 16 19 N -0.68 -13.15 5.55 -464.41 -2.58 -15.73 16 20 C 0.12 1.85 5.86 86.38 0.51 2.36 16 21 C 0.13 1.27 6.62 86.38 0.57 1.84 16 22 N -0.38 -5.55 3.68 -348.08 -1.28 -6.83 16 23 C 0.06 0.59 11.45 83.54 0.96 1.55 16 24 C -0.29 -3.29 10.80 21.99 0.24 -3.05 16 25 C 0.04 0.56 12.03 85.24 1.03 1.58 16 26 N -0.34 -6.75 12.42 -57.03 -0.71 -7.46 16 27 C 0.10 4.58 5.12 86.36 0.44 5.02 16 28 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 29 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.14 3.99 4.30 -48.56 -0.21 3.78 16 35 H 0.42 6.80 7.96 -92.71 -0.74 6.06 16 36 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.14 0.47 8.07 -2.39 -0.02 0.45 16 39 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.21 0.45 8.06 -2.91 -0.02 0.43 16 41 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 42 H 0.20 1.87 8.06 -2.91 -0.02 1.85 16 43 H 0.06 2.83 2.32 -2.39 -0.01 2.82 16 44 H 0.07 3.23 8.14 -2.38 -0.02 3.21 16 Total: -1.00 -76.92 357.16 1.52 -75.39 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.02 Total: 12.78 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 6.63 Total: 11.16 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -6.70 Total: -111.57 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -0.09 Total: -37.39 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 1.67 Total: 49.63 kcal Total: -76.92 1.52 -75.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350692243.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.025 kcal (2) G-P(sol) polarization free energy of solvation -76.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds