Wall clock time and date at job start Tue Mar 31 2020 12:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86793 * 119.99850 * 2 1 4 4 H 1.48493 * 109.47250 * 240.00001 * 3 2 1 5 5 H 1.48503 * 109.47339 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46979 * 119.99669 * 3 2 1 7 7 C 1.37881 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99635 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00047 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.52286 * 299.91668 * 9 7 2 11 11 C 1.53040 * 109.49627 * 179.83697 * 9 7 2 12 12 C 1.53070 * 109.66092 * 178.74544 * 11 9 7 13 13 C 1.53191 * 109.29330 * 61.15257 * 12 11 9 14 14 N 1.46929 * 108.89438 * 305.58156 * 13 12 11 15 15 C 1.34784 * 120.62828 * 233.55930 * 14 13 12 16 16 O 1.21344 * 119.99559 * 171.34854 * 15 14 13 17 17 C 1.49448 * 120.00133 * 351.35143 * 15 14 13 18 18 O 1.21352 * 120.00059 * 353.23366 * 17 15 14 19 19 N 1.34775 * 119.99800 * 173.23049 * 17 15 14 20 20 C 1.46499 * 119.99505 * 180.02562 * 19 17 15 21 21 C 1.53002 * 109.46991 * 179.97438 * 20 19 17 22 22 N 1.46496 * 109.47504 * 180.02562 * 21 20 19 23 23 C 1.34941 * 126.04296 * 124.99981 * 22 21 20 24 24 C 1.35317 * 107.74926 * 179.97438 * 23 22 21 25 25 C 1.39863 * 107.91999 * 0.02562 * 24 23 22 26 26 N 1.30842 * 108.20078 * 359.73856 * 25 24 23 27 27 C 1.46924 * 118.74080 * 53.53130 * 14 13 12 28 28 H 0.96998 * 120.00395 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46044 * 298.70739 * 11 9 7 30 30 H 1.09002 * 109.45987 * 58.67367 * 11 9 7 31 31 H 1.09001 * 109.38987 * 301.28181 * 12 11 9 32 32 H 1.08999 * 109.62294 * 181.17026 * 12 11 9 33 33 H 1.09001 * 109.59053 * 185.72359 * 13 12 11 34 34 H 1.08998 * 109.59048 * 65.43732 * 13 12 11 35 35 H 0.96995 * 120.00135 * 359.97438 * 19 17 15 36 36 H 1.08995 * 109.47247 * 299.99389 * 20 19 17 37 37 H 1.09002 * 109.47528 * 60.00666 * 20 19 17 38 38 H 1.09006 * 109.47119 * 300.00036 * 21 20 19 39 39 H 1.09005 * 109.46945 * 59.99566 * 21 20 19 40 40 H 1.08001 * 126.12319 * 359.97438 * 23 22 21 41 41 H 1.07998 * 126.03757 * 179.97438 * 24 23 22 42 42 H 1.07997 * 125.90025 * 179.97438 * 25 24 23 43 43 H 1.09006 * 109.57806 * 66.18216 * 27 14 13 44 44 H 1.09000 * 109.58866 * 186.46100 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6249 -2.5582 0.8907 11 6 2.2450 -3.6629 -0.0029 12 6 1.4838 -4.9905 0.0286 13 6 0.6033 -5.0989 -1.2203 14 7 -0.2555 -3.9094 -1.3016 15 6 -1.5922 -4.0344 -1.4206 16 8 -2.3035 -3.0556 -1.3293 17 6 -2.1982 -5.3785 -1.6649 18 8 -1.4843 -6.3363 -1.8784 19 7 -3.5377 -5.5269 -1.6480 20 6 -4.1317 -6.8445 -1.8869 21 6 -5.6562 -6.7377 -1.8129 22 7 -6.2503 -8.0555 -2.0512 23 6 -7.1134 -8.6965 -1.2357 24 6 -7.4242 -9.8804 -1.8127 25 6 -6.7267 -9.9660 -3.0219 26 7 -6.0267 -8.8703 -3.1685 27 6 0.3706 -2.5812 -1.2503 28 1 -0.4850 0.8400 0.0004 29 1 2.8544 -3.6173 -0.9056 30 1 2.8890 -3.5930 0.8737 31 1 0.8572 -5.0273 0.9198 32 1 2.1925 -5.8184 0.0471 33 1 -0.0164 -5.9931 -1.1540 34 1 1.2334 -5.1559 -2.1078 35 1 -4.1083 -4.7614 -1.4770 36 1 -3.8398 -7.2010 -2.8747 37 1 -3.7798 -7.5446 -1.1292 38 1 -5.9479 -6.3814 -0.8248 39 1 -6.0086 -6.0375 -2.5703 40 1 -7.4888 -8.3303 -0.2916 41 1 -8.0921 -10.6275 -1.4101 42 1 -6.7628 -10.7920 -3.7167 43 1 0.9836 -2.4317 -2.1391 44 1 -0.4027 -1.8142 -1.2064 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350692244.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:29 Heat of formation + Delta-G solvation = 24.262236 kcal Electronic energy + Delta-G solvation = -26525.613664 eV Core-core repulsion = 22673.468300 eV Total energy + Delta-G solvation = -3852.145363 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.45319 -40.53573 -38.42923 -36.90322 -35.95554 -33.49405 -33.06172 -31.76781 -30.49664 -29.79226 -28.91140 -26.00441 -25.02844 -24.11763 -22.25856 -21.84062 -21.40633 -21.05674 -20.15193 -18.91544 -17.65747 -17.22688 -16.58659 -16.29166 -16.21833 -15.47085 -15.35562 -14.89808 -14.55829 -14.45625 -14.35052 -13.87664 -13.73299 -13.37786 -13.29627 -13.07094 -12.92266 -12.61409 -12.53226 -12.21124 -12.03745 -11.82695 -11.44237 -10.97864 -10.96183 -10.74977 -10.49031 -10.32783 -10.15934 -9.90908 -9.78480 -9.40874 -9.26084 -9.13734 -8.95512 -8.65166 -8.47019 -7.86103 -6.03491 -4.12111 1.55115 1.72574 1.95911 2.55077 2.74201 3.30136 3.35708 3.37420 3.56515 3.87896 4.04687 4.31759 4.40061 4.50054 4.64340 4.70184 4.75851 5.15076 5.26420 5.33718 5.43980 5.51430 5.57445 5.63245 5.68823 5.80556 5.99090 6.20829 6.31445 6.34102 6.46184 6.56700 6.63016 6.68285 6.81513 6.95911 6.97152 7.11976 7.15286 7.37151 7.55881 7.78775 7.87797 7.92873 8.11419 8.32506 8.52540 8.91666 9.53427 11.01797 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027343 B = 0.002384 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.778615 B =11740.233594 C =12442.801690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.062 3.938 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.041 3.959 10 H 0.030 0.970 11 C -0.113 4.113 12 C -0.133 4.133 13 C 0.071 3.929 14 N -0.568 5.568 15 C 0.495 3.505 16 O -0.520 6.520 17 C 0.513 3.487 18 O -0.513 6.513 19 N -0.707 5.707 20 C 0.109 3.891 21 C 0.123 3.877 22 N -0.372 5.372 23 C 0.056 3.944 24 C -0.275 4.275 25 C 0.045 3.955 26 N -0.292 5.292 27 C 0.108 3.892 28 H 0.264 0.736 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.125 0.875 34 H 0.061 0.939 35 H 0.414 0.586 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.175 0.825 41 H 0.148 0.852 42 H 0.184 0.816 43 H 0.049 0.951 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.393 -17.122 -2.376 21.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.077 0.923 9 C 0.022 3.978 10 H 0.048 0.952 11 C -0.150 4.150 12 C -0.172 4.172 13 C -0.051 4.051 14 N -0.300 5.300 15 C 0.276 3.724 16 O -0.397 6.397 17 C 0.295 3.705 18 O -0.389 6.389 19 N -0.362 5.362 20 C -0.016 4.016 21 C 0.001 3.999 22 N -0.155 5.155 23 C -0.089 4.089 24 C -0.305 4.305 25 C -0.141 4.141 26 N -0.113 5.113 27 C -0.012 4.012 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.142 0.858 34 H 0.079 0.921 35 H 0.251 0.749 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.124 0.876 39 H 0.114 0.886 40 H 0.192 0.808 41 H 0.166 0.834 42 H 0.201 0.799 43 H 0.067 0.933 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.524 -16.356 -3.203 20.848 hybrid contribution -0.341 0.781 0.641 1.066 sum -12.865 -15.575 -2.563 20.363 Atomic orbital electron populations 1.69872 1.05738 1.26980 1.49351 1.25066 0.94926 0.99308 0.94792 0.86625 0.79562 0.83009 0.78626 1.20219 1.21255 1.20258 1.21051 0.92951 0.90027 1.51822 0.92289 1.18951 0.92631 0.92478 0.93711 0.95203 1.21664 0.98587 0.94186 1.00609 1.21964 0.98629 0.98875 0.97690 1.22677 0.94706 0.89678 0.98032 1.48444 1.04385 1.10237 1.66904 1.19725 0.84043 0.88077 0.80579 1.90776 1.60170 1.38946 1.49846 1.20781 0.82440 0.90194 0.77050 1.90500 1.59220 1.41827 1.47340 1.45600 1.06969 1.11594 1.72015 1.21552 0.90852 0.85155 1.03998 1.21806 0.93227 0.80843 1.04011 1.48497 1.35454 1.15716 1.15784 1.22630 0.94601 0.94188 0.97517 1.21541 1.10142 0.99964 0.98809 1.23948 0.95691 0.96683 0.97779 1.77425 1.23865 1.03824 1.06228 1.22510 0.98855 0.80590 0.99239 0.92579 0.93152 0.93009 0.92448 0.92036 0.85828 0.92084 0.74933 0.89465 0.90475 0.87569 0.88637 0.80787 0.83436 0.79950 0.93263 0.85764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.18 11.39 55.43 0.63 -24.55 16 2 C 0.06 1.69 5.30 -17.81 -0.09 1.59 16 3 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -13.96 8.56 -34.44 -0.29 -14.26 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.04 1.02 2.26 -91.66 -0.21 0.81 16 10 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 11 C -0.11 -2.30 5.10 -26.67 -0.14 -2.43 16 12 C -0.13 -2.32 6.09 -26.60 -0.16 -2.48 16 13 C 0.07 1.26 5.98 -3.71 -0.02 1.24 16 14 N -0.57 -11.72 2.97 -173.28 -0.52 -12.23 16 15 C 0.50 9.77 7.73 -11.58 -0.09 9.68 16 16 O -0.52 -11.55 15.93 5.50 0.09 -11.46 16 17 C 0.51 8.23 7.74 -11.59 -0.09 8.14 16 18 O -0.51 -8.77 13.18 5.50 0.07 -8.70 16 19 N -0.71 -8.44 5.55 -60.73 -0.34 -8.78 16 20 C 0.11 1.09 5.86 -4.04 -0.02 1.07 16 21 C 0.12 0.89 6.62 -4.04 -0.03 0.86 16 22 N -0.37 -3.35 3.68 -61.36 -0.23 -3.57 16 23 C 0.06 0.41 11.45 -17.23 -0.20 0.21 16 24 C -0.28 -2.03 10.80 -40.01 -0.43 -2.46 16 25 C 0.05 0.39 12.03 -17.37 -0.21 0.18 16 26 N -0.29 -3.22 12.42 30.62 0.38 -2.84 16 27 C 0.11 2.59 5.41 -3.72 -0.02 2.57 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.12 2.13 4.32 -54.77 -0.24 1.90 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.41 4.36 7.96 -40.82 -0.33 4.03 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.11 0.48 8.07 -51.93 -0.42 0.07 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.12 3.41 5.13 -51.93 -0.27 3.14 16 LS Contribution 364.04 15.07 5.49 5.49 Total: -1.00 -32.97 364.04 -7.73 -40.70 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.28 Total: 5.24 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -2.00 Total: 4.72 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -0.07 Total: -51.97 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: 0.16 Total: -20.16 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.97 -7.73 -40.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350692244.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.959 kcal (2) G-P(sol) polarization free energy of solvation -32.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds