Wall clock time and date at job start Tue Mar 31 2020 12:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86793 * 119.99850 * 2 1 4 4 H 1.48493 * 109.47250 * 240.00001 * 3 2 1 5 5 H 1.48503 * 109.47339 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46979 * 119.99669 * 3 2 1 7 7 C 1.37881 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99635 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00047 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.52286 * 299.91668 * 9 7 2 11 11 C 1.53040 * 109.49627 * 179.83697 * 9 7 2 12 12 C 1.53070 * 109.66092 * 178.74544 * 11 9 7 13 13 C 1.53191 * 109.29330 * 61.15257 * 12 11 9 14 14 N 1.46929 * 108.89438 * 305.58156 * 13 12 11 15 15 C 1.34784 * 120.62828 * 233.55930 * 14 13 12 16 16 O 1.21344 * 119.99559 * 171.34854 * 15 14 13 17 17 C 1.49448 * 120.00133 * 351.35143 * 15 14 13 18 18 O 1.21352 * 120.00059 * 353.23366 * 17 15 14 19 19 N 1.34775 * 119.99800 * 173.23049 * 17 15 14 20 20 C 1.46499 * 119.99505 * 180.02562 * 19 17 15 21 21 C 1.53002 * 109.46991 * 179.97438 * 20 19 17 22 22 N 1.46496 * 109.47504 * 180.02562 * 21 20 19 23 23 C 1.34941 * 126.04296 * 124.99981 * 22 21 20 24 24 C 1.35317 * 107.74926 * 179.97438 * 23 22 21 25 25 C 1.39863 * 107.91999 * 0.02562 * 24 23 22 26 26 N 1.30842 * 108.20078 * 359.73856 * 25 24 23 27 27 C 1.46924 * 118.74080 * 53.53130 * 14 13 12 28 28 H 0.96998 * 120.00395 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46044 * 298.70739 * 11 9 7 30 30 H 1.09002 * 109.45987 * 58.67367 * 11 9 7 31 31 H 1.09001 * 109.38987 * 301.28181 * 12 11 9 32 32 H 1.08999 * 109.62294 * 181.17026 * 12 11 9 33 33 H 1.09001 * 109.59053 * 185.72359 * 13 12 11 34 34 H 1.08998 * 109.59048 * 65.43732 * 13 12 11 35 35 H 0.96995 * 120.00135 * 359.97438 * 19 17 15 36 36 H 1.08995 * 109.47247 * 299.99389 * 20 19 17 37 37 H 1.09002 * 109.47528 * 60.00666 * 20 19 17 38 38 H 1.09006 * 109.47119 * 300.00036 * 21 20 19 39 39 H 1.09005 * 109.46945 * 59.99566 * 21 20 19 40 40 H 1.08001 * 126.12319 * 359.97438 * 23 22 21 41 41 H 1.07998 * 126.03757 * 179.97438 * 24 23 22 42 42 H 1.07997 * 125.90025 * 179.97438 * 25 24 23 43 43 H 1.09006 * 109.57806 * 66.18216 * 27 14 13 44 44 H 1.09000 * 109.58866 * 186.46100 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6249 -2.5582 0.8907 11 6 2.2450 -3.6629 -0.0029 12 6 1.4838 -4.9905 0.0286 13 6 0.6033 -5.0989 -1.2203 14 7 -0.2555 -3.9094 -1.3016 15 6 -1.5922 -4.0344 -1.4206 16 8 -2.3035 -3.0556 -1.3293 17 6 -2.1982 -5.3785 -1.6649 18 8 -1.4843 -6.3363 -1.8784 19 7 -3.5377 -5.5269 -1.6480 20 6 -4.1317 -6.8445 -1.8869 21 6 -5.6562 -6.7377 -1.8129 22 7 -6.2503 -8.0555 -2.0512 23 6 -7.1134 -8.6965 -1.2357 24 6 -7.4242 -9.8804 -1.8127 25 6 -6.7267 -9.9660 -3.0219 26 7 -6.0267 -8.8703 -3.1685 27 6 0.3706 -2.5812 -1.2503 28 1 -0.4850 0.8400 0.0004 29 1 2.8544 -3.6173 -0.9056 30 1 2.8890 -3.5930 0.8737 31 1 0.8572 -5.0273 0.9198 32 1 2.1925 -5.8184 0.0471 33 1 -0.0164 -5.9931 -1.1540 34 1 1.2334 -5.1559 -2.1078 35 1 -4.1083 -4.7614 -1.4770 36 1 -3.8398 -7.2010 -2.8747 37 1 -3.7798 -7.5446 -1.1292 38 1 -5.9479 -6.3814 -0.8248 39 1 -6.0086 -6.0375 -2.5703 40 1 -7.4888 -8.3303 -0.2916 41 1 -8.0921 -10.6275 -1.4101 42 1 -6.7628 -10.7920 -3.7167 43 1 0.9836 -2.4317 -2.1391 44 1 -0.4027 -1.8142 -1.2064 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350692244.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:29 Heat of formation + Delta-G solvation = 1.257020 kcal Electronic energy + Delta-G solvation = -26526.611245 eV Core-core repulsion = 22673.468300 eV Total energy + Delta-G solvation = -3853.142945 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.10627 -41.88543 -39.89003 -38.53861 -36.98985 -35.23505 -34.05780 -33.44899 -31.60077 -31.10638 -29.73430 -27.58513 -26.80944 -25.18485 -23.61824 -23.42566 -22.04119 -21.83236 -21.41573 -20.48391 -18.90029 -18.41873 -18.06452 -17.76395 -17.33738 -16.81522 -16.50305 -16.43150 -15.99711 -15.60924 -15.29432 -15.15007 -14.88893 -14.67607 -14.62496 -14.39230 -14.18424 -13.92903 -13.60656 -13.50068 -13.24645 -13.05220 -12.85166 -12.74326 -12.54220 -12.28761 -12.17320 -11.76374 -11.64816 -11.56333 -11.15813 -10.99134 -10.54363 -10.52610 -10.41054 -10.15536 -9.56897 -9.51945 -8.11416 -6.28022 0.30651 0.93655 1.14319 1.42738 1.43788 1.51879 1.71516 1.99098 2.09119 2.41674 2.57045 3.16310 3.27601 3.39736 3.71498 4.03779 4.10475 4.12801 4.15894 4.21241 4.31856 4.49939 4.57313 4.61787 4.69383 4.76386 4.80201 4.83804 4.93035 5.04837 5.10109 5.18784 5.21764 5.22107 5.31588 5.45374 5.56585 5.76123 5.82863 5.90506 5.94546 6.12587 6.29563 6.40290 6.66987 6.77788 6.82884 6.94517 7.41600 8.92198 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027343 B = 0.002384 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.778615 B =11740.233594 C =12442.801690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.012 3.988 3 Si 0.958 3.042 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.537 4.537 8 H 0.062 0.938 9 C 0.040 3.960 10 H -0.009 1.009 11 C -0.107 4.107 12 C -0.126 4.126 13 C 0.071 3.929 14 N -0.576 5.576 15 C 0.488 3.512 16 O -0.553 6.553 17 C 0.522 3.478 18 O -0.523 6.523 19 N -0.684 5.684 20 C 0.116 3.884 21 C 0.127 3.873 22 N -0.382 5.382 23 C 0.058 3.942 24 C -0.286 4.286 25 C 0.037 3.963 26 N -0.342 5.342 27 C 0.120 3.880 28 H 0.262 0.738 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.100 0.900 33 H 0.136 0.864 34 H 0.072 0.928 35 H 0.423 0.577 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.139 0.861 39 H 0.101 0.899 40 H 0.210 0.790 41 H 0.169 0.831 42 H 0.202 0.798 43 H 0.045 0.955 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.692 -18.567 -1.991 23.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.188 4.188 3 Si 0.784 3.216 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.575 4.575 8 H 0.080 0.920 9 C 0.020 3.980 10 H 0.009 0.991 11 C -0.145 4.145 12 C -0.163 4.163 13 C -0.049 4.049 14 N -0.308 5.308 15 C 0.270 3.730 16 O -0.432 6.432 17 C 0.303 3.697 18 O -0.400 6.400 19 N -0.339 5.339 20 C -0.008 4.008 21 C 0.005 3.995 22 N -0.165 5.165 23 C -0.088 4.088 24 C -0.315 4.315 25 C -0.149 4.149 26 N -0.164 5.164 27 C -0.001 4.001 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.118 0.882 33 H 0.153 0.847 34 H 0.090 0.910 35 H 0.261 0.739 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.157 0.843 39 H 0.119 0.881 40 H 0.226 0.774 41 H 0.186 0.814 42 H 0.219 0.781 43 H 0.063 0.937 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.841 -17.840 -2.821 22.161 hybrid contribution -0.325 1.175 0.531 1.330 sum -13.166 -16.665 -2.289 21.362 Atomic orbital electron populations 1.70047 1.07256 1.27473 1.50382 1.25874 0.95649 1.02800 0.94489 0.85606 0.78293 0.78750 0.78991 1.19345 1.21281 1.19489 1.21449 0.93310 0.91302 1.51430 0.91982 1.18887 0.93054 0.93816 0.92201 0.99089 1.21559 0.97796 0.94051 1.01050 1.21933 0.98878 0.98360 0.97174 1.22883 0.94710 0.88642 0.98703 1.48457 1.05320 1.09844 1.67142 1.20393 0.83644 0.89487 0.79453 1.90751 1.60840 1.40582 1.50999 1.19941 0.83716 0.88152 0.77848 1.90485 1.59780 1.41291 1.48490 1.45463 1.05510 1.12965 1.69915 1.21573 0.92921 0.83430 1.02828 1.21879 0.90805 0.80679 1.06154 1.48616 1.36083 1.16073 1.15754 1.23275 0.93463 0.93837 0.98183 1.21909 1.10395 1.00733 0.98438 1.24433 0.95131 0.96609 0.98693 1.77365 1.25795 1.05211 1.08015 1.21976 0.97644 0.81821 0.98670 0.92920 0.92495 0.92680 0.93140 0.88170 0.84669 0.90969 0.73889 0.91217 0.90648 0.84277 0.88056 0.77379 0.81373 0.78129 0.93717 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.95 11.39 21.45 0.24 -53.71 16 2 C 0.01 0.64 5.30 84.65 0.45 1.09 16 3 Si 0.96 43.55 29.54 68.60 2.03 45.57 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.54 -29.29 8.56 25.60 0.22 -29.07 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.04 2.00 2.26 -11.47 -0.03 1.98 16 10 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 11 C -0.11 -4.27 5.10 30.63 0.16 -4.12 16 12 C -0.13 -4.14 6.09 30.68 0.19 -3.96 16 13 C 0.07 2.44 5.98 86.36 0.52 2.96 16 14 N -0.58 -24.04 2.97 -820.49 -2.44 -26.48 16 15 C 0.49 19.51 7.73 87.27 0.67 20.19 16 16 O -0.55 -25.31 15.93 -3.23 -0.05 -25.36 16 17 C 0.52 16.39 7.74 87.27 0.68 17.06 16 18 O -0.52 -17.24 13.18 -3.25 -0.04 -17.28 16 19 N -0.68 -15.54 5.55 -464.41 -2.58 -18.12 16 20 C 0.12 2.17 5.86 86.38 0.51 2.68 16 21 C 0.13 1.56 6.62 86.38 0.57 2.13 16 22 N -0.38 -6.20 3.68 -348.06 -1.28 -7.48 16 23 C 0.06 0.68 11.45 83.54 0.96 1.63 16 24 C -0.29 -3.63 10.80 21.99 0.24 -3.39 16 25 C 0.04 0.60 12.03 85.23 1.02 1.63 16 26 N -0.34 -7.30 12.42 -57.03 -0.71 -8.01 16 27 C 0.12 5.97 5.41 86.36 0.47 6.44 16 28 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 29 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.14 4.42 4.32 -47.38 -0.20 4.21 16 34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.42 8.37 7.96 -92.71 -0.74 7.64 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.14 0.79 8.07 -2.38 -0.02 0.77 16 39 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.21 0.77 8.06 -2.91 -0.02 0.74 16 41 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 42 H 0.20 2.09 8.06 -2.91 -0.02 2.06 16 43 H 0.04 2.20 8.14 -2.38 -0.02 2.18 16 44 H 0.09 5.04 5.13 -2.39 -0.01 5.03 16 Total: -1.00 -74.20 364.04 1.88 -72.33 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.09 Total: 21.29 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 6.62 Total: 17.25 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -6.76 Total: -113.80 kcal Atomic # 8 Polarization: -42.54 SS G_CDS: -0.09 Total: -42.64 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -74.20 1.88 -72.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350692244.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.584 kcal (2) G-P(sol) polarization free energy of solvation -74.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds