Wall clock time and date at job start Tue Mar 31 2020 12:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99796 * 2 1 4 4 H 1.48502 * 109.47496 * 270.00323 * 3 2 1 5 5 H 1.48503 * 109.47098 * 30.00459 * 3 2 1 6 6 H 1.48508 * 109.47255 * 150.00346 * 3 2 1 7 7 C 1.37875 * 120.00297 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99749 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99971 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46885 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47188 * 180.02562 * 10 9 7 12 12 N 1.46494 * 109.47534 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00401 * 180.02562 * 12 11 10 14 14 O 1.21363 * 119.99599 * 359.97438 * 13 12 11 15 15 C 1.49306 * 119.99919 * 180.02562 * 13 12 11 16 16 O 1.21393 * 120.00029 * 359.97438 * 15 13 12 17 17 N 1.34777 * 119.99519 * 180.27489 * 15 13 12 18 18 C 1.39196 * 119.99709 * 179.72219 * 17 15 13 19 19 C 1.36218 * 126.27547 * 0.02606 * 18 17 15 20 20 C 1.39693 * 107.86413 * 180.02562 * 19 18 17 21 21 N 1.30852 * 108.45336 * 359.97438 * 20 19 18 22 22 N 1.35856 * 126.27485 * 179.71020 * 18 17 15 23 23 C 1.46508 * 126.09482 * 0.02562 * 22 18 17 24 24 C 1.53771 * 113.61313 * 219.13380 * 23 22 18 25 25 C 1.53949 * 87.02085 * 220.04867 * 24 23 22 26 26 C 1.53777 * 113.61114 * 121.52603 * 23 22 18 27 27 H 0.97001 * 119.99846 * 359.97438 * 1 2 3 28 28 H 1.09008 * 109.47155 * 60.00323 * 9 7 2 29 29 H 1.08998 * 109.47598 * 300.00064 * 9 7 2 30 30 H 1.08994 * 109.46778 * 60.00427 * 10 9 7 31 31 H 1.08998 * 109.47208 * 300.00491 * 10 9 7 32 32 H 1.09000 * 109.46887 * 59.99729 * 11 10 9 33 33 H 1.08998 * 109.46846 * 300.00551 * 11 10 9 34 34 H 0.97000 * 119.99459 * 0.02562 * 12 11 10 35 35 H 0.97001 * 120.00485 * 359.71503 * 17 15 13 36 36 H 1.08003 * 126.06497 * 359.97438 * 19 18 17 37 37 H 1.07997 * 125.77228 * 180.02562 * 20 19 18 38 38 H 1.08996 * 112.84673 * 350.33289 * 23 22 18 39 39 H 1.08995 * 113.61949 * 334.57092 * 24 23 22 40 40 H 1.09002 * 113.61445 * 105.47205 * 24 23 22 41 41 H 1.08998 * 113.54066 * 270.81501 * 25 24 23 42 42 H 1.09002 * 113.74593 * 139.94362 * 25 24 23 43 43 H 1.09004 * 113.61951 * 254.52791 * 26 23 22 44 44 H 1.09000 * 113.61772 * 25.43247 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5468 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1939 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5516 -2.6364 -0.0009 12 7 6.0400 -4.0176 -0.0014 13 6 7.3651 -4.2638 -0.0010 14 8 8.1537 -3.3413 -0.0006 15 6 7.8628 -5.6715 -0.0020 16 8 7.0740 -6.5942 -0.0029 17 7 9.1879 -5.9177 0.0040 18 6 9.6519 -7.2300 0.0089 19 6 8.8852 -8.3560 0.0076 20 6 9.7430 -9.4585 0.0145 21 7 10.9770 -9.0232 0.0190 22 7 10.9524 -7.6228 0.0096 23 6 12.1209 -6.7390 0.0060 24 6 13.2710 -7.2422 -0.8820 25 6 14.2278 -6.7681 0.2270 26 6 13.0572 -6.9509 1.2074 27 1 -0.4850 0.8401 0.0004 28 1 3.8752 -0.6803 0.8889 29 1 3.8746 -0.6799 -0.8911 30 1 3.6580 -3.1504 -0.8907 31 1 3.6586 -3.1501 0.8892 32 1 5.9149 -2.1225 0.8890 33 1 5.9149 -2.1226 -0.8909 34 1 5.4097 -4.7548 -0.0021 35 1 9.8182 -5.1804 0.0049 36 1 7.8057 -8.3901 0.0031 37 1 9.4391 -10.4948 0.0149 38 1 11.8611 -5.6946 -0.1662 39 1 13.2709 -8.3225 -1.0262 40 1 13.3756 -6.6896 -1.8158 41 1 14.5452 -5.7315 0.1144 42 1 15.0600 -7.4481 0.4090 43 1 12.9894 -6.1635 1.9581 44 1 12.9984 -7.9515 1.6356 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354119854.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:53 Heat of formation + Delta-G solvation = 30.797789 kcal Electronic energy + Delta-G solvation = -25624.589752 eV Core-core repulsion = 21772.727791 eV Total energy + Delta-G solvation = -3851.861961 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.00935 -40.70429 -39.02771 -38.60533 -36.16716 -35.25135 -33.41910 -31.89085 -31.56832 -29.60912 -27.73797 -26.24980 -25.78762 -25.21116 -22.97191 -22.17942 -21.30745 -20.72297 -20.12156 -19.68473 -18.98407 -17.90322 -16.95261 -16.76967 -16.50604 -16.00409 -15.76714 -15.54471 -15.43979 -14.82404 -14.42902 -14.29539 -13.97096 -13.82963 -13.57545 -13.36290 -13.05554 -12.77318 -12.75727 -12.18882 -12.04698 -11.98500 -11.70368 -11.49725 -11.24132 -11.18036 -11.15727 -10.97116 -10.79175 -10.25637 -10.06622 -9.86230 -9.69583 -9.28743 -9.27113 -9.23961 -8.59996 -8.47189 -6.10184 -4.09533 0.81926 1.50408 1.70756 2.32813 2.59846 2.97298 3.24155 3.27235 3.35254 3.37800 3.80953 3.94316 4.08338 4.14083 4.23339 4.39869 4.56918 4.72305 4.99402 5.15573 5.16525 5.22130 5.23246 5.32219 5.36150 5.38097 5.41754 5.46966 5.53278 5.70652 5.83429 5.89218 5.98193 6.30783 6.38030 6.45488 6.49116 6.66558 6.69372 7.07210 7.14485 7.27531 7.36365 7.43918 7.69968 7.73722 8.45584 8.93713 9.51357 11.02934 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027190 B = 0.001985 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.528480 B =14103.118087 C =14981.882149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.116 4.116 11 C 0.111 3.889 12 N -0.684 5.684 13 C 0.510 3.490 14 O -0.523 6.523 15 C 0.516 3.484 16 O -0.480 6.480 17 N -0.625 5.625 18 C 0.300 3.700 19 C -0.275 4.275 20 C 0.059 3.941 21 N -0.284 5.284 22 N -0.375 5.375 23 C 0.126 3.874 24 C -0.137 4.137 25 C -0.139 4.139 26 C -0.143 4.143 27 H 0.264 0.736 28 H 0.019 0.981 29 H 0.015 0.985 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.415 0.585 35 H 0.421 0.579 36 H 0.174 0.826 37 H 0.188 0.812 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.572 -15.937 0.157 31.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.048 4.048 10 C -0.154 4.154 11 C -0.011 4.011 12 N -0.336 5.336 13 C 0.289 3.711 14 O -0.399 6.399 15 C 0.298 3.702 16 O -0.351 6.351 17 N -0.274 5.274 18 C 0.081 3.919 19 C -0.306 4.306 20 C -0.127 4.127 21 N -0.106 5.106 22 N -0.163 5.163 23 C 0.024 3.976 24 C -0.175 4.175 25 C -0.177 4.177 26 C -0.181 4.181 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.033 0.967 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.251 0.749 35 H 0.259 0.741 36 H 0.191 0.809 37 H 0.205 0.795 38 H 0.136 0.864 39 H 0.119 0.881 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 28.645 -15.977 0.162 32.799 hybrid contribution -0.523 1.279 -0.026 1.382 sum 28.122 -14.697 0.136 31.731 Atomic orbital electron populations 1.69910 1.06313 1.26998 1.50753 1.25034 0.94761 0.99237 0.94453 0.86776 0.80361 0.83561 0.78569 1.20241 1.21344 1.18936 1.21076 0.89203 0.94595 1.51313 0.90906 1.19503 0.97433 0.91142 0.96734 1.21759 0.89888 1.01412 1.02322 1.21921 0.96864 0.79604 1.02712 1.46004 1.05650 1.11512 1.70459 1.19512 0.84298 0.87853 0.79481 1.90788 1.55196 1.45001 1.48963 1.20395 0.81662 0.90752 0.77438 1.90740 1.54632 1.45166 1.44552 1.42407 1.08254 1.05568 1.71185 1.18124 0.85829 0.85391 1.02596 1.21719 1.01993 0.88758 1.18125 1.23785 0.89791 1.00297 0.98840 1.77355 1.21397 0.85839 1.25971 1.48893 1.02462 1.04972 1.59940 1.23036 0.82158 0.92507 0.99888 1.23323 0.93273 1.03277 0.97621 1.22754 0.96899 1.02225 0.95844 1.23385 0.94577 1.03796 0.96338 0.92645 0.96226 0.96655 0.91693 0.91671 0.90844 0.90860 0.74889 0.74119 0.80897 0.79533 0.86448 0.88094 0.90556 0.89512 0.90202 0.90508 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.96 55.43 0.77 -26.50 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 7 C -0.52 -14.38 9.66 -34.44 -0.33 -14.72 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 10 C -0.12 -2.02 5.27 -26.73 -0.14 -2.16 16 11 C 0.11 1.63 5.67 -4.04 -0.02 1.61 16 12 N -0.68 -8.74 5.55 -60.78 -0.34 -9.07 16 13 C 0.51 6.50 7.88 -11.65 -0.09 6.40 16 14 O -0.52 -7.58 16.47 5.49 0.09 -7.49 16 15 C 0.52 6.02 7.85 -11.65 -0.09 5.93 16 16 O -0.48 -6.25 13.60 5.46 0.07 -6.17 16 17 N -0.63 -6.26 5.40 -11.80 -0.06 -6.32 16 18 C 0.30 3.27 7.68 -152.85 -1.17 2.09 16 19 C -0.27 -3.10 9.65 -39.77 -0.38 -3.48 16 20 C 0.06 0.58 12.00 -17.43 -0.21 0.37 16 21 N -0.28 -3.02 12.02 30.59 0.37 -2.65 16 22 N -0.37 -3.68 3.71 -53.02 -0.20 -3.87 16 23 C 0.13 0.88 4.63 -67.12 -0.31 0.57 16 24 C -0.14 -0.82 7.78 -25.84 -0.20 -1.02 16 25 C -0.14 -0.64 8.09 -25.83 -0.21 -0.85 16 26 C -0.14 -0.86 7.88 -25.92 -0.20 -1.07 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 28 H 0.02 0.44 7.20 -51.92 -0.37 0.06 16 29 H 0.02 0.33 7.57 -51.93 -0.39 -0.06 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.41 4.77 7.94 -40.82 -0.32 4.44 16 35 H 0.42 3.42 7.21 -40.82 -0.29 3.12 16 36 H 0.17 2.07 5.83 -52.48 -0.31 1.76 16 37 H 0.19 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.12 0.61 7.15 -51.93 -0.37 0.24 16 39 H 0.10 0.75 7.75 -51.93 -0.40 0.35 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 370.77 15.07 5.59 5.59 Total: -1.00 -32.64 370.77 -8.23 -40.88 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -6.28 Total: 3.99 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -3.58 Total: -4.86 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.54 Total: -48.42 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.16 Total: -13.66 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.64 -8.23 -40.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354119854.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.673 kcal (2) G-P(sol) polarization free energy of solvation -32.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds