Wall clock time and date at job start Tue Mar 31 2020 12:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99796 * 2 1 4 4 H 1.48502 * 109.47496 * 270.00323 * 3 2 1 5 5 H 1.48503 * 109.47098 * 30.00459 * 3 2 1 6 6 H 1.48508 * 109.47255 * 150.00346 * 3 2 1 7 7 C 1.37875 * 120.00297 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99749 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99971 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46885 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47188 * 180.02562 * 10 9 7 12 12 N 1.46494 * 109.47534 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00401 * 180.02562 * 12 11 10 14 14 O 1.21363 * 119.99599 * 359.97438 * 13 12 11 15 15 C 1.49306 * 119.99919 * 180.02562 * 13 12 11 16 16 O 1.21393 * 120.00029 * 359.97438 * 15 13 12 17 17 N 1.34777 * 119.99519 * 180.27489 * 15 13 12 18 18 C 1.39196 * 119.99709 * 179.72219 * 17 15 13 19 19 C 1.36218 * 126.27547 * 0.02606 * 18 17 15 20 20 C 1.39693 * 107.86413 * 180.02562 * 19 18 17 21 21 N 1.30852 * 108.45336 * 359.97438 * 20 19 18 22 22 N 1.35856 * 126.27485 * 179.71020 * 18 17 15 23 23 C 1.46508 * 126.09482 * 0.02562 * 22 18 17 24 24 C 1.53771 * 113.61313 * 219.13380 * 23 22 18 25 25 C 1.53949 * 87.02085 * 220.04867 * 24 23 22 26 26 C 1.53777 * 113.61114 * 121.52603 * 23 22 18 27 27 H 0.97001 * 119.99846 * 359.97438 * 1 2 3 28 28 H 1.09008 * 109.47155 * 60.00323 * 9 7 2 29 29 H 1.08998 * 109.47598 * 300.00064 * 9 7 2 30 30 H 1.08994 * 109.46778 * 60.00427 * 10 9 7 31 31 H 1.08998 * 109.47208 * 300.00491 * 10 9 7 32 32 H 1.09000 * 109.46887 * 59.99729 * 11 10 9 33 33 H 1.08998 * 109.46846 * 300.00551 * 11 10 9 34 34 H 0.97000 * 119.99459 * 0.02562 * 12 11 10 35 35 H 0.97001 * 120.00485 * 359.71503 * 17 15 13 36 36 H 1.08003 * 126.06497 * 359.97438 * 19 18 17 37 37 H 1.07997 * 125.77228 * 180.02562 * 20 19 18 38 38 H 1.08996 * 112.84673 * 350.33289 * 23 22 18 39 39 H 1.08995 * 113.61949 * 334.57092 * 24 23 22 40 40 H 1.09002 * 113.61445 * 105.47205 * 24 23 22 41 41 H 1.08998 * 113.54066 * 270.81501 * 25 24 23 42 42 H 1.09002 * 113.74593 * 139.94362 * 25 24 23 43 43 H 1.09004 * 113.61951 * 254.52791 * 26 23 22 44 44 H 1.09000 * 113.61772 * 25.43247 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5468 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1939 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5516 -2.6364 -0.0009 12 7 6.0400 -4.0176 -0.0014 13 6 7.3651 -4.2638 -0.0010 14 8 8.1537 -3.3413 -0.0006 15 6 7.8628 -5.6715 -0.0020 16 8 7.0740 -6.5942 -0.0029 17 7 9.1879 -5.9177 0.0040 18 6 9.6519 -7.2300 0.0089 19 6 8.8852 -8.3560 0.0076 20 6 9.7430 -9.4585 0.0145 21 7 10.9770 -9.0232 0.0190 22 7 10.9524 -7.6228 0.0096 23 6 12.1209 -6.7390 0.0060 24 6 13.2710 -7.2422 -0.8820 25 6 14.2278 -6.7681 0.2270 26 6 13.0572 -6.9509 1.2074 27 1 -0.4850 0.8401 0.0004 28 1 3.8752 -0.6803 0.8889 29 1 3.8746 -0.6799 -0.8911 30 1 3.6580 -3.1504 -0.8907 31 1 3.6586 -3.1501 0.8892 32 1 5.9149 -2.1225 0.8890 33 1 5.9149 -2.1226 -0.8909 34 1 5.4097 -4.7548 -0.0021 35 1 9.8182 -5.1804 0.0049 36 1 7.8057 -8.3901 0.0031 37 1 9.4391 -10.4948 0.0149 38 1 11.8611 -5.6946 -0.1662 39 1 13.2709 -8.3225 -1.0262 40 1 13.3756 -6.6896 -1.8158 41 1 14.5452 -5.7315 0.1144 42 1 15.0600 -7.4481 0.4090 43 1 12.9894 -6.1635 1.9581 44 1 12.9984 -7.9515 1.6356 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354119854.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:52 Heat of formation + Delta-G solvation = 8.912374 kcal Electronic energy + Delta-G solvation = -25625.538775 eV Core-core repulsion = 21772.727791 eV Total energy + Delta-G solvation = -3852.810983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.81453 -41.62542 -39.88820 -39.25844 -37.33546 -36.29920 -35.14131 -33.32645 -32.58286 -30.47794 -29.27755 -26.71299 -26.59302 -26.17989 -24.38384 -22.98069 -22.33090 -22.03461 -21.03456 -20.47007 -19.71745 -19.04187 -18.58001 -17.93520 -17.47280 -16.77247 -16.57154 -16.44114 -16.33999 -16.09242 -15.87456 -15.22593 -15.06924 -14.96798 -14.76959 -14.16582 -14.02416 -13.81387 -13.65385 -13.57241 -13.28680 -12.97813 -12.73941 -12.69561 -12.34328 -12.18058 -11.94818 -11.81611 -11.74800 -11.61549 -11.59329 -11.40502 -11.32158 -10.88498 -10.74367 -10.34878 -9.97340 -9.30584 -8.27255 -6.31697 -0.11804 0.63974 0.87814 1.39447 1.41104 1.52532 1.55850 1.77044 2.03852 2.34816 2.38378 3.08623 3.14329 3.30150 3.46291 3.61137 3.80146 3.96881 4.01263 4.10409 4.19041 4.32569 4.48304 4.49564 4.69131 4.72621 4.74450 4.79513 4.87815 4.91503 4.96319 4.98637 5.02842 5.03890 5.13287 5.39009 5.48150 5.57186 5.62034 5.66970 5.72726 5.84478 6.15339 6.29153 6.45903 6.67261 6.72230 6.77284 7.33058 8.89215 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027190 B = 0.001985 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.528480 B =14103.118087 C =14981.882149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.001 3.999 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.242 1.242 7 C -0.532 4.532 8 H 0.034 0.966 9 C -0.011 4.011 10 C -0.106 4.106 11 C 0.124 3.876 12 N -0.681 5.681 13 C 0.517 3.483 14 O -0.537 6.537 15 C 0.522 3.478 16 O -0.496 6.496 17 N -0.612 5.612 18 C 0.289 3.711 19 C -0.292 4.292 20 C 0.058 3.942 21 N -0.299 5.299 22 N -0.372 5.372 23 C 0.111 3.889 24 C -0.137 4.137 25 C -0.127 4.127 26 C -0.142 4.142 27 H 0.265 0.735 28 H 0.026 0.974 29 H 0.025 0.975 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.421 0.579 35 H 0.430 0.570 36 H 0.164 0.836 37 H 0.215 0.785 38 H 0.137 0.863 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.394 -15.189 0.121 33.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.196 4.196 3 Si 0.774 3.226 4 H -0.192 1.192 5 H -0.214 1.214 6 H -0.165 1.165 7 C -0.570 4.570 8 H 0.053 0.947 9 C -0.049 4.049 10 C -0.144 4.144 11 C 0.001 3.999 12 N -0.333 5.333 13 C 0.296 3.704 14 O -0.415 6.415 15 C 0.304 3.696 16 O -0.367 6.367 17 N -0.262 5.262 18 C 0.069 3.931 19 C -0.324 4.324 20 C -0.127 4.127 21 N -0.121 5.121 22 N -0.159 5.159 23 C 0.010 3.990 24 C -0.175 4.175 25 C -0.164 4.164 26 C -0.181 4.181 27 H 0.074 0.926 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.259 0.741 35 H 0.270 0.730 36 H 0.182 0.818 37 H 0.232 0.768 38 H 0.154 0.846 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.123 0.877 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 31.517 -15.251 0.127 35.013 hybrid contribution -1.423 0.936 -0.015 1.704 sum 30.093 -14.314 0.112 33.324 Atomic orbital electron populations 1.70074 1.08376 1.28114 1.52725 1.26047 0.95620 1.03661 0.94243 0.85656 0.79636 0.78161 0.79182 1.19242 1.21397 1.16512 1.21489 0.92147 0.93150 1.50243 0.94727 1.19465 0.93845 0.94386 0.97237 1.21533 0.92005 0.98442 1.02400 1.21613 0.94534 0.80609 1.03104 1.45845 1.05998 1.11031 1.70445 1.19545 0.83922 0.88071 0.78826 1.90784 1.55516 1.45543 1.49664 1.20109 0.82067 0.89982 0.77489 1.90750 1.55164 1.45326 1.45503 1.42234 1.07846 1.05733 1.70345 1.18209 0.86487 0.85476 1.02932 1.21788 1.01878 0.89672 1.19051 1.24232 0.89165 1.01367 0.97946 1.77330 1.21904 0.86502 1.26382 1.49130 1.02701 1.04949 1.59164 1.23503 0.81582 0.93080 1.00840 1.23291 0.93369 1.02367 0.98445 1.22747 0.96249 1.03317 0.94123 1.23349 0.95078 1.03130 0.96499 0.92591 0.95586 0.95701 0.91708 0.91729 0.90526 0.90464 0.74137 0.72992 0.81844 0.76847 0.84581 0.89784 0.89599 0.87723 0.89774 0.89565 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.99 13.96 21.45 0.30 -58.69 16 2 C 0.00 0.05 5.47 84.65 0.46 0.51 16 3 Si 0.95 42.98 27.47 68.60 1.88 44.86 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 6 H -0.24 -9.96 6.54 99.48 0.65 -9.31 16 7 C -0.53 -29.52 9.66 25.60 0.25 -29.28 16 8 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 9 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 10 C -0.11 -3.55 5.27 30.60 0.16 -3.39 16 11 C 0.12 3.37 5.67 86.38 0.49 3.86 16 12 N -0.68 -16.16 5.55 -464.57 -2.58 -18.73 16 13 C 0.52 12.23 7.88 87.22 0.69 12.92 16 14 O -0.54 -14.39 16.47 -3.29 -0.05 -14.45 16 15 C 0.52 11.52 7.85 87.22 0.68 12.20 16 16 O -0.50 -12.51 13.60 -3.38 -0.05 -12.56 16 17 N -0.61 -11.39 5.40 -309.58 -1.67 -13.07 16 18 C 0.29 6.02 7.68 131.25 1.01 7.03 16 19 C -0.29 -6.45 9.65 22.15 0.21 -6.24 16 20 C 0.06 1.09 12.00 85.19 1.02 2.12 16 21 N -0.30 -6.16 12.02 -57.13 -0.69 -6.84 16 22 N -0.37 -6.92 3.71 -321.65 -1.19 -8.11 16 23 C 0.11 1.37 4.63 45.51 0.21 1.58 16 24 C -0.14 -1.44 7.78 31.17 0.24 -1.19 16 25 C -0.13 -0.90 8.09 31.18 0.25 -0.64 16 26 C -0.14 -1.50 7.88 31.12 0.25 -1.26 16 27 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 28 H 0.03 1.09 7.20 -2.38 -0.02 1.07 16 29 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 30 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.42 9.08 7.94 -92.71 -0.74 8.34 16 35 H 0.43 6.18 7.21 -92.71 -0.67 5.51 16 36 H 0.16 3.91 5.83 -2.91 -0.02 3.89 16 37 H 0.22 2.46 8.06 -2.91 -0.02 2.44 16 38 H 0.14 1.11 7.15 -2.39 -0.02 1.09 16 39 H 0.08 1.19 7.75 -2.39 -0.02 1.17 16 40 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -70.73 370.77 1.58 -69.15 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -0.42 Total: 20.59 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 6.05 Total: -2.15 kcal Atomic # 7 Polarization: -99.62 SS G_CDS: -5.83 Total: -105.45 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.10 Total: -27.00 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.88 Total: 44.86 kcal Total: -70.73 1.58 -69.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354119854.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.062 kcal (2) G-P(sol) polarization free energy of solvation -70.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds