Wall clock time and date at job start Tue Mar 31 2020 12:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00270 * 2 1 4 4 H 1.48500 * 109.46971 * 270.00083 * 3 2 1 5 5 H 1.48505 * 109.46977 * 29.99620 * 3 2 1 6 6 H 1.48502 * 109.47551 * 149.99667 * 3 2 1 7 7 C 1.37878 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99591 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00446 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47595 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47600 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47555 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00199 * 180.02562 * 12 11 10 14 14 O 1.21363 * 119.99801 * 359.97438 * 13 12 11 15 15 C 1.49328 * 119.99886 * 180.27510 * 13 12 11 16 16 O 1.21403 * 120.00227 * 359.71910 * 15 13 12 17 17 N 1.34775 * 119.99747 * 179.72511 * 15 13 12 18 18 C 1.40481 * 119.99800 * 180.02562 * 17 15 13 19 19 C 1.40342 * 126.11562 * 359.68522 * 18 17 15 20 20 N 1.30823 * 108.20762 * 179.81750 * 19 18 17 21 21 N 1.40052 * 108.36987 * 0.44330 * 20 19 18 22 22 C 1.46500 * 125.99826 * 179.71186 * 21 20 19 23 23 C 1.53772 * 113.61524 * 194.13419 * 22 21 20 24 24 C 1.53956 * 87.02251 * 220.05087 * 23 22 21 25 25 C 1.53777 * 87.10814 * 25.36544 * 24 23 22 26 26 C 1.35232 * 108.00886 * 359.71656 * 21 20 19 27 27 H 0.97000 * 119.99614 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47333 * 59.99560 * 9 7 2 29 29 H 1.09002 * 109.47271 * 299.99993 * 9 7 2 30 30 H 1.08998 * 109.47142 * 59.99440 * 10 9 7 31 31 H 1.09011 * 109.47134 * 299.99765 * 10 9 7 32 32 H 1.08998 * 109.47382 * 59.99524 * 11 10 9 33 33 H 1.08997 * 109.46954 * 299.99596 * 11 10 9 34 34 H 0.97000 * 119.99484 * 359.97438 * 12 11 10 35 35 H 0.97000 * 120.00517 * 359.97438 * 17 15 13 36 36 H 1.08001 * 125.89534 * 359.97438 * 19 18 17 37 37 H 1.08998 * 112.85092 * 325.33874 * 22 21 20 38 38 H 1.09000 * 113.61922 * 334.57212 * 23 22 21 39 39 H 1.09007 * 113.61137 * 105.47518 * 23 22 21 40 40 H 1.08996 * 113.53690 * 270.81296 * 24 23 22 41 41 H 1.08999 * 113.74168 * 139.94094 * 24 23 22 42 42 H 1.09004 * 113.61482 * 220.09201 * 25 24 23 43 43 H 1.09006 * 113.61634 * 89.18790 * 25 24 23 44 44 H 1.07995 * 126.17927 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0012 12 7 2.4322 -6.1007 0.0018 13 6 1.9829 -7.3714 0.0009 14 8 0.7897 -7.5931 0.0000 15 6 2.9533 -8.5064 0.0077 16 8 4.1469 -8.2846 0.0089 17 7 2.5039 -9.7770 0.0124 18 6 3.4168 -10.8448 0.0193 19 6 4.8161 -10.7368 0.0159 20 7 5.3192 -11.9444 0.0288 21 7 4.2621 -12.8630 0.0305 22 6 4.3896 -14.3224 0.0373 23 6 3.0829 -15.0566 -0.3065 24 6 3.4570 -16.0690 0.7913 25 6 4.2804 -14.9437 1.4398 26 6 3.1029 -12.1665 0.0246 27 1 -0.4849 0.8401 0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5568 0.8903 30 1 2.8712 -3.6040 0.8922 31 1 2.8726 -3.6048 -0.8878 32 1 0.8545 -5.0450 -0.8894 33 1 0.8527 -5.0447 0.8905 34 1 3.3858 -5.9234 0.0021 35 1 1.5503 -9.9543 0.0117 36 1 5.3801 -9.8158 0.0071 37 1 5.2508 -14.6748 -0.5304 38 1 2.1857 -14.4799 -0.0812 39 1 3.0725 -15.4828 -1.3097 40 1 4.0624 -16.8999 0.4291 41 1 2.6101 -16.3941 1.3956 42 1 5.2354 -15.2789 1.8444 43 1 3.7113 -14.3361 2.1434 44 1 2.1075 -12.5854 0.0246 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354448284.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:46 Heat of formation + Delta-G solvation = 24.205249 kcal Electronic energy + Delta-G solvation = -25111.055007 eV Core-core repulsion = 21258.907173 eV Total energy + Delta-G solvation = -3852.147835 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.90705 -40.57472 -39.11746 -38.37174 -35.87454 -34.90231 -33.32468 -31.76794 -31.26150 -29.75400 -27.31128 -26.42015 -25.85234 -24.61962 -22.89276 -22.15880 -21.33941 -20.76116 -20.16205 -19.64572 -18.38490 -18.06636 -16.76383 -16.39434 -16.27908 -16.10750 -15.81226 -15.33028 -15.21212 -14.72848 -14.59233 -14.44356 -13.89984 -13.67039 -13.53701 -13.45984 -12.97062 -12.81583 -12.31557 -12.02372 -11.90072 -11.81897 -11.59842 -11.45504 -11.30989 -11.00944 -10.96971 -10.91387 -10.76698 -10.60421 -9.90928 -9.81063 -9.70973 -9.39931 -9.13890 -9.02051 -8.38023 -8.07202 -6.02902 -4.05857 1.10038 1.62885 1.91295 2.40153 2.54736 3.25836 3.31358 3.37792 3.40909 3.56830 3.69453 3.82504 4.09758 4.13034 4.31049 4.42732 4.46162 4.62802 4.87932 4.97084 4.98952 5.15443 5.20380 5.22767 5.27505 5.33230 5.38109 5.57547 5.64669 5.67818 5.76894 6.06746 6.22930 6.49228 6.53130 6.61674 6.68033 6.87505 6.94473 7.29383 7.43277 7.61352 7.67961 7.72838 7.95255 7.99191 8.36659 9.00623 9.58601 11.08337 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.047002 B = 0.001648 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.582470 B =16987.193202 C =17430.787314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.114 3.886 12 N -0.688 5.688 13 C 0.506 3.494 14 O -0.525 6.525 15 C 0.510 3.490 16 O -0.510 6.510 17 N -0.615 5.615 18 C -0.004 4.004 19 C 0.054 3.946 20 N -0.286 5.286 21 N -0.357 5.357 22 C 0.140 3.860 23 C -0.146 4.146 24 C -0.137 4.137 25 C -0.149 4.149 26 C 0.026 3.974 27 H 0.261 0.739 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.412 0.588 35 H 0.422 0.578 36 H 0.208 0.792 37 H 0.123 0.877 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.883 -33.693 0.541 34.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.161 4.161 11 C -0.008 4.008 12 N -0.340 5.340 13 C 0.285 3.715 14 O -0.402 6.402 15 C 0.292 3.708 16 O -0.384 6.384 17 N -0.261 5.261 18 C -0.109 4.109 19 C -0.133 4.133 20 N -0.107 5.107 21 N -0.140 5.140 22 C 0.039 3.961 23 C -0.185 4.185 24 C -0.175 4.175 25 C -0.187 4.187 26 C -0.122 4.122 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.248 0.752 35 H 0.259 0.741 36 H 0.224 0.776 37 H 0.141 0.859 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.108 0.892 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 6.789 -34.317 0.550 34.987 hybrid contribution -0.445 1.466 -0.027 1.533 sum 6.344 -32.851 0.523 33.462 Atomic orbital electron populations 1.69963 1.06057 1.26706 1.50554 1.25021 0.94860 0.99316 0.95219 0.86573 0.79821 0.83363 0.78111 1.20654 1.21218 1.19861 1.21204 0.93072 0.90887 1.50984 0.92553 1.19033 0.93804 0.90785 0.97730 1.21934 0.99895 0.92903 1.01377 1.21868 0.91712 0.84635 1.02621 1.46053 1.12354 1.04845 1.70753 1.19725 0.88186 0.84349 0.79239 1.90775 1.15852 1.84642 1.48969 1.20349 0.88928 0.83815 0.77757 1.90653 1.16187 1.84304 1.47257 1.42392 1.10060 1.03154 1.70544 1.17721 0.90468 0.86729 1.15983 1.24564 0.92117 0.96833 0.99753 1.77423 1.11509 0.98058 1.23675 1.48313 1.03170 1.05836 1.56726 1.23011 1.00740 0.73257 0.99136 1.23459 0.96693 0.97510 1.00813 1.22737 1.00716 0.96515 0.97568 1.23464 1.01762 0.97391 0.96104 1.21686 0.92949 0.90442 1.07134 0.92931 0.96181 0.96180 0.92368 0.92382 0.90997 0.90990 0.75180 0.74083 0.77616 0.85883 0.88837 0.89737 0.89265 0.90063 0.90117 0.89204 0.80588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 11 C 0.11 1.89 5.67 -4.04 -0.02 1.87 16 12 N -0.69 -9.91 5.55 -60.77 -0.34 -10.25 16 13 C 0.51 7.22 7.88 -11.64 -0.09 7.13 16 14 O -0.53 -8.50 16.48 5.49 0.09 -8.41 16 15 C 0.51 6.52 7.86 -11.64 -0.09 6.42 16 16 O -0.51 -7.17 13.63 5.45 0.07 -7.10 16 17 N -0.61 -6.47 5.46 -10.48 -0.06 -6.53 16 18 C 0.00 -0.05 6.90 -83.95 -0.58 -0.63 16 19 C 0.05 0.66 10.84 -17.19 -0.19 0.48 16 20 N -0.29 -3.42 12.56 30.72 0.39 -3.04 16 21 N -0.36 -3.18 3.81 -53.87 -0.21 -3.39 16 22 C 0.14 0.79 5.02 -67.12 -0.34 0.45 16 23 C -0.15 -0.47 7.46 -25.83 -0.19 -0.66 16 24 C -0.14 -0.35 8.09 -25.83 -0.21 -0.56 16 25 C -0.15 -0.67 7.88 -25.92 -0.20 -0.87 16 26 C 0.03 0.21 10.73 -16.91 -0.18 0.03 16 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.41 5.37 7.94 -40.82 -0.32 5.04 16 35 H 0.42 3.62 8.29 -40.82 -0.34 3.28 16 36 H 0.21 2.63 5.92 -52.49 -0.31 2.32 16 37 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.26 6.32 -51.93 -0.33 -0.07 16 39 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 40 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 41 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 42 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.18 0.80 6.70 -52.49 -0.35 0.45 16 LS Contribution 373.69 15.07 5.63 5.63 Total: -1.00 -33.31 373.69 -7.76 -41.07 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.27 Total: 3.04 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -2.79 Total: -1.64 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.52 Total: -48.99 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: 0.16 Total: -15.51 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.31 -7.76 -41.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354448284.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.275 kcal (2) G-P(sol) polarization free energy of solvation -33.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds