Wall clock time and date at job start Tue Mar 31 2020 12:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00270 * 2 1 4 4 H 1.48500 * 109.46971 * 270.00083 * 3 2 1 5 5 H 1.48505 * 109.46977 * 29.99620 * 3 2 1 6 6 H 1.48502 * 109.47551 * 149.99667 * 3 2 1 7 7 C 1.37878 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99591 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00446 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47595 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47600 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47555 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00199 * 180.02562 * 12 11 10 14 14 O 1.21363 * 119.99801 * 359.97438 * 13 12 11 15 15 C 1.49328 * 119.99886 * 180.27510 * 13 12 11 16 16 O 1.21403 * 120.00227 * 359.71910 * 15 13 12 17 17 N 1.34775 * 119.99747 * 179.72511 * 15 13 12 18 18 C 1.40481 * 119.99800 * 180.02562 * 17 15 13 19 19 C 1.40342 * 126.11562 * 359.68522 * 18 17 15 20 20 N 1.30823 * 108.20762 * 179.81750 * 19 18 17 21 21 N 1.40052 * 108.36987 * 0.44330 * 20 19 18 22 22 C 1.46500 * 125.99826 * 179.71186 * 21 20 19 23 23 C 1.53772 * 113.61524 * 194.13419 * 22 21 20 24 24 C 1.53956 * 87.02251 * 220.05087 * 23 22 21 25 25 C 1.53777 * 87.10814 * 25.36544 * 24 23 22 26 26 C 1.35232 * 108.00886 * 359.71656 * 21 20 19 27 27 H 0.97000 * 119.99614 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47333 * 59.99560 * 9 7 2 29 29 H 1.09002 * 109.47271 * 299.99993 * 9 7 2 30 30 H 1.08998 * 109.47142 * 59.99440 * 10 9 7 31 31 H 1.09011 * 109.47134 * 299.99765 * 10 9 7 32 32 H 1.08998 * 109.47382 * 59.99524 * 11 10 9 33 33 H 1.08997 * 109.46954 * 299.99596 * 11 10 9 34 34 H 0.97000 * 119.99484 * 359.97438 * 12 11 10 35 35 H 0.97000 * 120.00517 * 359.97438 * 17 15 13 36 36 H 1.08001 * 125.89534 * 359.97438 * 19 18 17 37 37 H 1.08998 * 112.85092 * 325.33874 * 22 21 20 38 38 H 1.09000 * 113.61922 * 334.57212 * 23 22 21 39 39 H 1.09007 * 113.61137 * 105.47518 * 23 22 21 40 40 H 1.08996 * 113.53690 * 270.81296 * 24 23 22 41 41 H 1.08999 * 113.74168 * 139.94094 * 24 23 22 42 42 H 1.09004 * 113.61482 * 220.09201 * 25 24 23 43 43 H 1.09006 * 113.61634 * 89.18790 * 25 24 23 44 44 H 1.07995 * 126.17927 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0012 12 7 2.4322 -6.1007 0.0018 13 6 1.9829 -7.3714 0.0009 14 8 0.7897 -7.5931 0.0000 15 6 2.9533 -8.5064 0.0077 16 8 4.1469 -8.2846 0.0089 17 7 2.5039 -9.7770 0.0124 18 6 3.4168 -10.8448 0.0193 19 6 4.8161 -10.7368 0.0159 20 7 5.3192 -11.9444 0.0288 21 7 4.2621 -12.8630 0.0305 22 6 4.3896 -14.3224 0.0373 23 6 3.0829 -15.0566 -0.3065 24 6 3.4570 -16.0690 0.7913 25 6 4.2804 -14.9437 1.4398 26 6 3.1029 -12.1665 0.0246 27 1 -0.4849 0.8401 0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5568 0.8903 30 1 2.8712 -3.6040 0.8922 31 1 2.8726 -3.6048 -0.8878 32 1 0.8545 -5.0450 -0.8894 33 1 0.8527 -5.0447 0.8905 34 1 3.3858 -5.9234 0.0021 35 1 1.5503 -9.9543 0.0117 36 1 5.3801 -9.8158 0.0071 37 1 5.2508 -14.6748 -0.5304 38 1 2.1857 -14.4799 -0.0812 39 1 3.0725 -15.4828 -1.3097 40 1 4.0624 -16.8999 0.4291 41 1 2.6101 -16.3941 1.3956 42 1 5.2354 -15.2789 1.8444 43 1 3.7113 -14.3361 2.1434 44 1 2.1075 -12.5854 0.0246 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354448284.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:45 Heat of formation + Delta-G solvation = 0.950199 kcal Electronic energy + Delta-G solvation = -25112.063422 eV Core-core repulsion = 21258.907173 eV Total energy + Delta-G solvation = -3853.156249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.67757 -41.58524 -39.84687 -39.17176 -37.21798 -35.99757 -35.12252 -33.03595 -32.45963 -30.55952 -28.94814 -26.83220 -26.61382 -25.72926 -24.38993 -22.86941 -22.35546 -22.21036 -21.09030 -20.29348 -19.33502 -18.87818 -18.44090 -17.70722 -17.26371 -16.79921 -16.61191 -16.52305 -16.29884 -16.22089 -15.76722 -15.37507 -15.09998 -14.86089 -14.26575 -14.13217 -13.96238 -13.76492 -13.51693 -13.41002 -13.25287 -12.79639 -12.75041 -12.52810 -12.39234 -12.35290 -12.04831 -11.90554 -11.67997 -11.53590 -11.51561 -11.41844 -11.21952 -10.71734 -10.53324 -10.43519 -10.29365 -8.86770 -8.18310 -6.28927 0.11843 0.82402 1.08236 1.43109 1.43741 1.54559 1.56252 1.63029 2.23084 2.42621 2.61050 3.15765 3.27478 3.36046 3.50863 3.72045 3.82680 3.83575 3.96152 4.10272 4.20908 4.39265 4.44365 4.55041 4.59344 4.70226 4.77028 4.86101 4.89684 4.94042 4.97639 5.00869 5.07527 5.17191 5.23854 5.36519 5.53329 5.62969 5.72950 5.86162 5.89352 5.99641 6.24207 6.30157 6.56597 6.72791 6.87951 6.88756 7.40396 8.93459 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.047002 B = 0.001648 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.582470 B =16987.193202 C =17430.787314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.024 3.976 10 C -0.107 4.107 11 C 0.127 3.873 12 N -0.684 5.684 13 C 0.511 3.489 14 O -0.544 6.544 15 C 0.512 3.488 16 O -0.526 6.526 17 N -0.597 5.597 18 C -0.033 4.033 19 C 0.037 3.963 20 N -0.317 5.317 21 N -0.350 5.350 22 C 0.121 3.879 23 C -0.137 4.137 24 C -0.126 4.126 25 C -0.150 4.150 26 C 0.052 3.948 27 H 0.263 0.737 28 H -0.003 1.003 29 H -0.003 1.003 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.420 0.580 35 H 0.432 0.568 36 H 0.193 0.807 37 H 0.124 0.876 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.130 -35.593 0.464 36.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.013 4.013 10 C -0.145 4.145 11 C 0.005 3.995 12 N -0.336 5.336 13 C 0.291 3.709 14 O -0.422 6.422 15 C 0.293 3.707 16 O -0.403 6.403 17 N -0.244 5.244 18 C -0.137 4.137 19 C -0.149 4.149 20 N -0.140 5.140 21 N -0.133 5.133 22 C 0.020 3.980 23 C -0.176 4.176 24 C -0.163 4.163 25 C -0.188 4.188 26 C -0.098 4.098 27 H 0.072 0.928 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.258 0.742 35 H 0.271 0.729 36 H 0.210 0.790 37 H 0.142 0.858 38 H 0.121 0.879 39 H 0.113 0.887 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 7.062 -36.267 0.474 36.951 hybrid contribution -0.530 1.890 0.007 1.963 sum 6.533 -34.377 0.480 34.995 Atomic orbital electron populations 1.70096 1.07760 1.27730 1.51652 1.25957 0.95739 1.03315 0.94807 0.85458 0.78676 0.78562 0.78404 1.19898 1.20956 1.18721 1.21691 0.93715 0.92194 1.50504 0.91826 1.18937 0.94369 0.92541 0.95498 1.21646 0.98647 0.91937 1.02238 1.21494 0.91536 0.84344 1.02174 1.45850 1.12389 1.04507 1.70870 1.19933 0.88144 0.84501 0.78343 1.90764 1.16755 1.84943 1.49784 1.19959 0.88227 0.84094 0.78379 1.90663 1.16548 1.84514 1.48541 1.42209 1.10617 1.02381 1.69221 1.17850 0.89864 0.87602 1.18402 1.24445 0.93095 0.96690 1.00681 1.77363 1.13088 0.98514 1.24990 1.48723 1.02789 1.06792 1.55013 1.23515 1.02620 0.71461 1.00377 1.23495 0.95381 0.97026 1.01675 1.22721 1.00664 0.96029 0.96925 1.23464 1.02042 0.98055 0.95287 1.22289 0.94254 0.89427 1.03793 0.92824 0.98447 0.98447 0.91472 0.91460 0.91533 0.91530 0.74227 0.72874 0.79038 0.85772 0.87924 0.88679 0.88202 0.89085 0.90383 0.90015 0.76530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.23 13.29 21.45 0.28 -55.94 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.54 -30.18 9.11 25.60 0.23 -29.95 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.02 1.23 4.97 29.84 0.15 1.38 16 10 C -0.11 -4.05 5.27 30.59 0.16 -3.89 16 11 C 0.13 4.23 5.67 86.38 0.49 4.72 16 12 N -0.68 -19.29 5.55 -464.55 -2.58 -21.86 16 13 C 0.51 14.28 7.88 87.23 0.69 14.97 16 14 O -0.54 -17.26 16.48 -3.29 -0.05 -17.31 16 15 C 0.51 12.85 7.86 87.23 0.69 13.54 16 16 O -0.53 -14.88 13.63 -3.41 -0.05 -14.93 16 17 N -0.60 -11.92 5.46 -305.42 -1.67 -13.58 16 18 C -0.03 -0.67 6.90 37.71 0.26 -0.41 16 19 C 0.04 0.91 10.84 85.36 0.93 1.84 16 20 N -0.32 -7.61 12.56 -56.72 -0.71 -8.33 16 21 N -0.35 -5.74 3.81 -324.34 -1.24 -6.98 16 22 C 0.12 1.12 5.02 45.52 0.23 1.35 16 23 C -0.14 -0.44 7.46 31.18 0.23 -0.21 16 24 C -0.13 -0.27 8.09 31.18 0.25 -0.02 16 25 C -0.15 -1.07 7.88 31.12 0.25 -0.83 16 26 C 0.05 0.73 10.73 83.62 0.90 1.62 16 27 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 28 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 29 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 30 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 32 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.42 10.61 7.94 -92.71 -0.74 9.88 16 35 H 0.43 6.67 8.29 -92.71 -0.77 5.90 16 36 H 0.19 5.18 5.92 -2.91 -0.02 5.16 16 37 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.10 0.16 6.32 -2.39 -0.02 0.14 16 39 H 0.09 0.16 8.14 -2.38 -0.02 0.14 16 40 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 42 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 43 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 44 H 0.22 1.08 6.70 -2.91 -0.02 1.06 16 Total: -1.00 -72.73 373.69 1.46 -71.27 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -0.46 Total: 17.23 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 5.91 Total: 4.56 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -5.91 Total: -106.70 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.10 Total: -32.24 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -72.73 1.46 -71.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354448284.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.221 kcal (2) G-P(sol) polarization free energy of solvation -72.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds