Wall clock time and date at job start Tue Mar 31 2020 13:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39759 * 125.83345 * 2 1 4 4 C 1.36117 * 107.82406 * 180.14357 * 3 2 1 5 5 N 1.39464 * 126.21465 * 179.84440 * 4 3 2 6 6 C 1.34779 * 120.00404 * 359.69184 * 5 4 3 7 7 O 1.21297 * 119.99592 * 359.97438 * 6 5 4 8 8 C 1.50693 * 120.00531 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.47380 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.73263 * 305.40243 * 9 8 6 11 11 C 1.53344 * 109.60395 * 185.00121 * 9 8 6 12 12 C 1.53069 * 108.42740 * 172.70911 * 11 9 8 13 13 C 1.50178 * 109.82098 * 48.94141 * 12 11 9 14 14 O 1.21276 * 118.24609 * 162.37280 * 13 12 11 15 15 N 1.33242 * 123.59638 * 342.28284 * 13 12 11 16 16 C 1.45754 * 124.06721 * 2.38387 * 15 13 12 17 17 N 1.35260 * 107.56364 * 359.58585 * 4 3 2 18 18 C 1.46508 * 126.04063 * 180.22974 * 17 4 3 19 19 C 1.50692 * 109.47138 * 89.99902 * 18 17 4 20 20 H 1.07999 * 120.00220 * 359.97438 * 19 18 17 21 21 C 1.37884 * 119.99716 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99962 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99799 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47050 * 90.00062 * 23 21 19 25 25 H 1.48499 * 109.47304 * 209.99969 * 23 21 19 26 26 H 1.48497 * 109.47391 * 330.00236 * 23 21 19 27 27 N 1.30845 * 125.83779 * 179.67659 * 2 1 3 28 28 H 1.09002 * 109.47023 * 270.29701 * 1 2 3 29 29 H 1.08996 * 109.47556 * 30.30272 * 1 2 3 30 30 H 1.09006 * 109.46763 * 150.30296 * 1 2 3 31 31 H 1.07995 * 126.08656 * 359.97438 * 3 2 1 32 32 H 0.97006 * 120.00305 * 179.69023 * 5 4 3 33 33 H 1.09004 * 109.46951 * 59.99917 * 8 6 5 34 34 H 1.09001 * 109.46904 * 300.00026 * 8 6 5 35 35 H 1.09001 * 109.67758 * 52.97731 * 11 9 8 36 36 H 1.09000 * 109.67480 * 292.44400 * 11 9 8 37 37 H 1.09002 * 109.40300 * 169.02821 * 12 11 9 38 38 H 1.09003 * 109.40410 * 288.85575 * 12 11 9 39 39 H 0.96999 * 117.98155 * 182.30064 * 15 13 12 40 40 H 1.08997 * 109.30011 * 220.53170 * 16 15 13 41 41 H 1.09001 * 109.13243 * 101.05060 * 16 15 13 42 42 H 1.09002 * 109.46745 * 210.00045 * 18 17 4 43 43 H 1.08996 * 109.46920 * 329.99236 * 18 17 4 44 44 H 0.97001 * 119.99797 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1331 0.0000 4 6 3.6197 0.7122 -0.0032 5 7 4.7512 1.5276 -0.0074 6 6 4.6156 2.8685 -0.0148 7 8 3.5094 3.3662 -0.0183 8 6 5.8382 3.7495 -0.0187 9 6 5.4087 5.2179 -0.0263 10 1 4.7353 5.4001 -0.8639 11 6 6.6455 6.1151 -0.1563 12 6 6.1773 7.5602 -0.3450 13 6 5.1469 7.9013 0.6929 14 8 4.9079 9.0719 0.9013 15 7 4.4790 6.9882 1.3967 16 6 4.6975 5.5514 1.2857 17 7 3.6092 -0.6403 0.0041 18 6 4.7871 -1.5115 0.0085 19 6 5.1914 -1.8024 1.4308 20 1 4.6276 -1.3803 2.2495 21 6 6.2811 -2.6075 1.6868 22 7 6.9679 -3.1211 0.6897 23 14 6.7826 -2.9676 3.4498 24 1 6.0825 -4.1883 3.9241 25 1 8.2506 -3.1830 3.5127 26 1 6.4135 -1.8179 4.3141 27 7 2.2731 -1.0607 0.0060 28 1 -0.3633 0.0053 1.0277 29 1 -0.3634 0.8872 -0.5185 30 1 -0.3633 -0.8928 -0.5092 31 1 1.9901 2.1597 -0.0004 32 1 5.6358 1.1296 -0.0050 33 1 6.4340 3.5402 -0.9072 34 1 6.4327 3.5499 0.8728 35 1 7.2350 5.8048 -1.0190 36 1 7.2497 6.0402 0.7478 37 1 7.0291 8.2328 -0.2444 38 1 5.7422 7.6731 -1.3380 39 1 3.8063 7.2987 2.0228 40 1 3.7367 5.0375 1.3154 41 1 5.3106 5.2175 2.1227 42 1 4.5499 -2.4458 -0.5002 43 1 5.6082 -1.0148 -0.5083 44 1 7.7347 -3.6872 0.8698 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362075620.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:17 Heat of formation + Delta-G solvation = -11.662978 kcal Electronic energy + Delta-G solvation = -26762.358853 eV Core-core repulsion = 22908.655656 eV Total energy + Delta-G solvation = -3853.703198 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.06007 -40.48060 -39.31154 -36.90400 -34.80476 -33.82537 -33.66415 -32.14183 -31.71273 -29.26314 -28.53508 -26.83631 -26.07882 -24.75143 -23.05689 -22.51479 -21.20850 -19.81438 -19.32220 -19.30228 -17.37806 -17.10665 -16.81419 -16.52139 -16.17212 -15.79317 -15.44055 -15.07427 -14.71460 -14.45537 -14.25154 -14.01232 -13.86397 -13.50701 -13.30286 -12.89538 -12.83292 -12.56140 -12.52512 -12.07155 -11.88841 -11.82352 -11.63245 -11.56921 -11.29248 -11.19305 -11.13093 -10.94647 -10.45343 -10.39372 -10.00245 -9.90402 -9.87406 -9.56525 -9.21351 -8.78199 -7.97948 -7.50626 -6.39625 -4.48386 2.15850 2.46556 2.73368 3.03667 3.11394 3.11943 3.19405 3.22949 3.54051 3.70769 4.18227 4.20929 4.30492 4.34273 4.46100 4.68833 4.93861 4.98849 5.07054 5.10125 5.25266 5.30745 5.31540 5.41282 5.47267 5.51517 5.59702 5.76507 5.94212 5.99174 6.11032 6.13501 6.20506 6.36727 6.56785 6.60116 6.76978 6.98190 7.15243 7.45154 7.52042 7.55978 7.73370 7.83640 8.02345 8.21541 8.56000 8.64990 9.19566 10.67460 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012021 B = 0.003300 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.635234 B = 8482.037966 C =10012.459966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.050 3.950 3 C -0.295 4.295 4 C 0.300 3.700 5 N -0.639 5.639 6 C 0.517 3.483 7 O -0.516 6.516 8 C -0.130 4.130 9 C -0.087 4.087 10 H 0.093 0.907 11 C -0.121 4.121 12 C -0.134 4.134 13 C 0.517 3.483 14 O -0.567 6.567 15 N -0.715 5.715 16 C 0.105 3.895 17 N -0.344 5.344 18 C 0.257 3.743 19 C -0.541 4.541 20 H 0.065 0.935 21 C 0.067 3.933 22 N -0.890 5.890 23 Si 0.906 3.094 24 H -0.276 1.276 25 H -0.283 1.283 26 H -0.272 1.272 27 N -0.286 5.286 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.161 0.839 32 H 0.417 0.583 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.400 0.600 40 H 0.100 0.900 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.044 0.956 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.165 14.931 -2.655 15.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.327 4.327 4 C 0.077 3.923 5 N -0.286 5.286 6 C 0.304 3.696 7 O -0.390 6.390 8 C -0.171 4.171 9 C -0.107 4.107 10 H 0.111 0.889 11 C -0.159 4.159 12 C -0.173 4.173 13 C 0.304 3.696 14 O -0.447 6.447 15 N -0.365 5.365 16 C -0.019 4.019 17 N -0.130 5.130 18 C 0.139 3.861 19 C -0.580 4.580 20 H 0.083 0.917 21 C -0.137 4.137 22 N -0.527 5.527 23 Si 0.733 3.267 24 H -0.202 1.202 25 H -0.208 1.208 26 H -0.197 1.197 27 N -0.111 5.111 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.179 0.821 32 H 0.254 0.746 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.235 0.765 40 H 0.118 0.882 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.200 14.351 -2.760 14.615 hybrid contribution 0.796 0.076 1.215 1.455 sum 0.596 14.427 -1.544 14.522 Atomic orbital electron populations 1.20022 0.87619 1.02335 1.02151 1.22039 0.96514 0.91091 1.01836 1.21258 0.89042 1.00394 1.21972 1.17953 0.88075 0.83364 1.02876 1.42840 1.08305 1.05718 1.71707 1.20632 0.91590 0.81350 0.76055 1.90618 1.26963 1.73572 1.47895 1.21667 0.96170 0.93318 1.05937 1.21211 0.97391 0.92934 0.99125 0.88881 1.21767 0.97276 0.93260 1.03592 1.21624 0.98566 0.98229 0.98931 1.20194 0.82104 0.85191 0.82082 1.90753 1.67168 1.18888 1.67905 1.45452 1.40787 1.07140 1.43161 1.21705 1.03088 0.80023 0.97104 1.49365 1.06532 1.02245 1.54835 1.19617 0.77797 0.89792 0.98902 1.21334 1.13311 1.32007 0.91317 0.91720 1.24938 0.95686 0.94833 0.98204 1.69914 1.19180 1.32455 1.31164 0.86355 0.77652 0.79122 0.83573 1.20188 1.20821 1.19694 1.77365 0.86164 1.21844 1.25714 0.91322 0.91161 0.91559 0.82137 0.74640 0.87497 0.87733 0.89968 0.90743 0.88069 0.88095 0.76514 0.88199 0.91791 0.92587 0.93817 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.44 36.01 0.38 -0.52 16 2 C 0.05 0.97 7.21 -82.44 -0.59 0.37 16 3 C -0.29 -5.67 9.58 -39.78 -0.38 -6.05 16 4 C 0.30 5.89 7.66 -153.17 -1.17 4.72 16 5 N -0.64 -9.77 5.41 -11.46 -0.06 -9.83 16 6 C 0.52 6.52 7.55 -10.99 -0.08 6.44 16 7 O -0.52 -7.70 11.19 5.54 0.06 -7.63 16 8 C -0.13 -0.99 5.17 -27.89 -0.14 -1.14 16 9 C -0.09 -0.66 1.89 -90.49 -0.17 -0.83 16 10 H 0.09 0.81 7.93 -51.93 -0.41 0.40 16 11 C -0.12 -0.71 5.32 -26.52 -0.14 -0.85 16 12 C -0.13 -0.99 6.04 -28.10 -0.17 -1.16 16 13 C 0.52 5.69 7.71 -11.92 -0.09 5.59 16 14 O -0.57 -8.62 17.78 5.56 0.10 -8.52 16 15 N -0.71 -6.81 5.44 -61.42 -0.33 -7.15 16 16 C 0.10 0.91 6.11 -4.49 -0.03 0.88 16 17 N -0.34 -7.73 3.60 -61.57 -0.22 -7.95 16 18 C 0.26 6.16 6.01 -5.19 -0.03 6.13 16 19 C -0.54 -14.02 9.39 -34.44 -0.32 -14.35 16 20 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 21 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -23.57 13.29 55.43 0.74 -22.83 16 23 Si 0.91 20.01 29.54 -169.99 -5.02 14.99 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 27 N -0.29 -6.45 12.56 33.65 0.42 -6.03 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.16 2.95 5.83 -52.49 -0.31 2.65 16 32 H 0.42 5.83 7.97 -40.82 -0.33 5.51 16 33 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.65 8.11 -51.93 -0.42 0.23 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.40 3.62 8.80 -40.82 -0.36 3.26 16 40 H 0.10 1.04 6.23 -51.93 -0.32 0.72 16 41 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 42 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.04 1.00 7.50 -51.93 -0.39 0.61 16 44 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 365.52 15.07 5.51 5.51 Total: -1.00 -33.22 365.52 -8.17 -41.39 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.30 Total: 7.20 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -3.05 Total: 0.86 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.54 Total: -53.79 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.16 Total: -16.15 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.22 -8.17 -41.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362075620.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.724 kcal (2) G-P(sol) polarization free energy of solvation -33.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds