Wall clock time and date at job start Tue Mar 31 2020 13:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39759 * 125.83345 * 2 1 4 4 C 1.36117 * 107.82406 * 180.14357 * 3 2 1 5 5 N 1.39464 * 126.21465 * 179.84440 * 4 3 2 6 6 C 1.34779 * 120.00404 * 359.69184 * 5 4 3 7 7 O 1.21297 * 119.99592 * 359.97438 * 6 5 4 8 8 C 1.50693 * 120.00531 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.47380 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.73263 * 305.40243 * 9 8 6 11 11 C 1.53344 * 109.60395 * 185.00121 * 9 8 6 12 12 C 1.53069 * 108.42740 * 172.70911 * 11 9 8 13 13 C 1.50178 * 109.82098 * 48.94141 * 12 11 9 14 14 O 1.21276 * 118.24609 * 162.37280 * 13 12 11 15 15 N 1.33242 * 123.59638 * 342.28284 * 13 12 11 16 16 C 1.45754 * 124.06721 * 2.38387 * 15 13 12 17 17 N 1.35260 * 107.56364 * 359.58585 * 4 3 2 18 18 C 1.46508 * 126.04063 * 180.22974 * 17 4 3 19 19 C 1.50692 * 109.47138 * 89.99902 * 18 17 4 20 20 H 1.07999 * 120.00220 * 359.97438 * 19 18 17 21 21 C 1.37884 * 119.99716 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99962 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99799 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47050 * 90.00062 * 23 21 19 25 25 H 1.48499 * 109.47304 * 209.99969 * 23 21 19 26 26 H 1.48497 * 109.47391 * 330.00236 * 23 21 19 27 27 N 1.30845 * 125.83779 * 179.67659 * 2 1 3 28 28 H 1.09002 * 109.47023 * 270.29701 * 1 2 3 29 29 H 1.08996 * 109.47556 * 30.30272 * 1 2 3 30 30 H 1.09006 * 109.46763 * 150.30296 * 1 2 3 31 31 H 1.07995 * 126.08656 * 359.97438 * 3 2 1 32 32 H 0.97006 * 120.00305 * 179.69023 * 5 4 3 33 33 H 1.09004 * 109.46951 * 59.99917 * 8 6 5 34 34 H 1.09001 * 109.46904 * 300.00026 * 8 6 5 35 35 H 1.09001 * 109.67758 * 52.97731 * 11 9 8 36 36 H 1.09000 * 109.67480 * 292.44400 * 11 9 8 37 37 H 1.09002 * 109.40300 * 169.02821 * 12 11 9 38 38 H 1.09003 * 109.40410 * 288.85575 * 12 11 9 39 39 H 0.96999 * 117.98155 * 182.30064 * 15 13 12 40 40 H 1.08997 * 109.30011 * 220.53170 * 16 15 13 41 41 H 1.09001 * 109.13243 * 101.05060 * 16 15 13 42 42 H 1.09002 * 109.46745 * 210.00045 * 18 17 4 43 43 H 1.08996 * 109.46920 * 329.99236 * 18 17 4 44 44 H 0.97001 * 119.99797 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1331 0.0000 4 6 3.6197 0.7122 -0.0032 5 7 4.7512 1.5276 -0.0074 6 6 4.6156 2.8685 -0.0148 7 8 3.5094 3.3662 -0.0183 8 6 5.8382 3.7495 -0.0187 9 6 5.4087 5.2179 -0.0263 10 1 4.7353 5.4001 -0.8639 11 6 6.6455 6.1151 -0.1563 12 6 6.1773 7.5602 -0.3450 13 6 5.1469 7.9013 0.6929 14 8 4.9079 9.0719 0.9013 15 7 4.4790 6.9882 1.3967 16 6 4.6975 5.5514 1.2857 17 7 3.6092 -0.6403 0.0041 18 6 4.7871 -1.5115 0.0085 19 6 5.1914 -1.8024 1.4308 20 1 4.6276 -1.3803 2.2495 21 6 6.2811 -2.6075 1.6868 22 7 6.9679 -3.1211 0.6897 23 14 6.7826 -2.9676 3.4498 24 1 6.0825 -4.1883 3.9241 25 1 8.2506 -3.1830 3.5127 26 1 6.4135 -1.8179 4.3141 27 7 2.2731 -1.0607 0.0060 28 1 -0.3633 0.0053 1.0277 29 1 -0.3634 0.8872 -0.5185 30 1 -0.3633 -0.8928 -0.5092 31 1 1.9901 2.1597 -0.0004 32 1 5.6358 1.1296 -0.0050 33 1 6.4340 3.5402 -0.9072 34 1 6.4327 3.5499 0.8728 35 1 7.2350 5.8048 -1.0190 36 1 7.2497 6.0402 0.7478 37 1 7.0291 8.2328 -0.2444 38 1 5.7422 7.6731 -1.3380 39 1 3.8063 7.2987 2.0228 40 1 3.7367 5.0375 1.3154 41 1 5.3106 5.2175 2.1227 42 1 4.5499 -2.4458 -0.5002 43 1 5.6082 -1.0148 -0.5083 44 1 7.7347 -3.6872 0.8698 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362075620.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:17 Heat of formation + Delta-G solvation = -34.837939 kcal Electronic energy + Delta-G solvation = -26763.363795 eV Core-core repulsion = 22908.655656 eV Total energy + Delta-G solvation = -3854.708139 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.39977 -41.40299 -40.44382 -37.75635 -36.19554 -35.53520 -34.39498 -33.80183 -32.43989 -30.76600 -29.91765 -27.85438 -27.67155 -25.40203 -24.74110 -23.49312 -22.26803 -21.18947 -20.60311 -19.98639 -18.86684 -18.37350 -18.16291 -17.70572 -17.10712 -16.75323 -16.49241 -16.45747 -16.07143 -15.70443 -15.46542 -15.01239 -14.63366 -14.49622 -14.39097 -14.30907 -14.01370 -13.93393 -13.63006 -13.36670 -13.17912 -13.09220 -12.85836 -12.71214 -12.48461 -12.28219 -12.22587 -11.97436 -11.83572 -11.74176 -11.63792 -11.36402 -10.85443 -10.75390 -10.69089 -10.04811 -9.59946 -9.00859 -8.35222 -6.52503 0.86738 1.37281 1.39396 1.43647 1.51516 1.63599 1.70594 2.12141 2.24890 2.36834 2.38859 2.95524 3.51233 3.55855 3.73162 3.84183 3.86884 4.00380 4.26893 4.41586 4.45998 4.56101 4.65918 4.66246 4.74756 4.77507 4.80412 4.86492 4.89578 4.93783 4.98823 5.00742 5.03485 5.20514 5.24244 5.27520 5.39693 5.52621 5.78809 5.78992 5.99185 6.23022 6.35373 6.38260 6.59833 7.03697 7.11280 7.20057 7.20355 8.71082 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012021 B = 0.003300 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.635234 B = 8482.037966 C =10012.459966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.055 3.945 3 C -0.308 4.308 4 C 0.302 3.698 5 N -0.641 5.641 6 C 0.515 3.485 7 O -0.538 6.538 8 C -0.118 4.118 9 C -0.084 4.084 10 H 0.081 0.919 11 C -0.111 4.111 12 C -0.130 4.130 13 C 0.509 3.491 14 O -0.618 6.618 15 N -0.711 5.711 16 C 0.104 3.896 17 N -0.369 5.369 18 C 0.273 3.727 19 C -0.555 4.555 20 H 0.047 0.953 21 C 0.029 3.971 22 N -0.913 5.913 23 Si 0.967 3.033 24 H -0.280 1.280 25 H -0.269 1.269 26 H -0.269 1.269 27 N -0.337 5.337 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.170 0.830 32 H 0.422 0.578 33 H 0.138 0.862 34 H 0.128 0.872 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.398 0.602 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.023 0.977 43 H 0.052 0.948 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.564 15.761 -2.409 16.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.110 4.110 3 C -0.340 4.340 4 C 0.079 3.921 5 N -0.289 5.289 6 C 0.305 3.695 7 O -0.414 6.414 8 C -0.158 4.158 9 C -0.103 4.103 10 H 0.100 0.900 11 C -0.148 4.148 12 C -0.170 4.170 13 C 0.298 3.702 14 O -0.502 6.502 15 N -0.360 5.360 16 C -0.019 4.019 17 N -0.154 5.154 18 C 0.154 3.846 19 C -0.593 4.593 20 H 0.065 0.935 21 C -0.173 4.173 22 N -0.551 5.551 23 Si 0.792 3.208 24 H -0.206 1.206 25 H -0.193 1.193 26 H -0.194 1.194 27 N -0.162 5.162 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.091 0.909 31 H 0.187 0.813 32 H 0.260 0.740 33 H 0.156 0.844 34 H 0.146 0.854 35 H 0.128 0.872 36 H 0.102 0.898 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.233 0.767 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.041 0.959 43 H 0.070 0.930 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.208 15.179 -2.521 15.434 hybrid contribution 0.257 -0.123 1.123 1.159 sum 1.466 15.056 -1.398 15.191 Atomic orbital electron populations 1.20209 0.84250 1.03915 1.03574 1.22871 0.98620 0.90334 0.99144 1.21473 0.89058 1.00692 1.22745 1.18384 0.89869 0.82722 1.01129 1.43139 1.07316 1.06285 1.72142 1.21694 0.93017 0.80500 0.74327 1.90605 1.28608 1.73627 1.48560 1.21769 0.93887 0.91615 1.08534 1.21190 0.98055 0.93288 0.97796 0.90037 1.21747 0.96412 0.91332 1.05349 1.21675 0.97771 0.99647 0.97899 1.20915 0.82411 0.84498 0.82330 1.90727 1.68947 1.20923 1.69587 1.45526 1.40280 1.07573 1.42583 1.21757 1.02569 0.79031 0.98593 1.49164 1.06170 1.03130 1.56939 1.19210 0.78690 0.88985 0.97720 1.21400 1.13587 1.32636 0.91656 0.93475 1.25651 0.95430 0.94300 1.01893 1.69985 1.19523 1.32693 1.32925 0.85414 0.77849 0.78572 0.78990 1.20599 1.19337 1.19372 1.77306 0.86643 1.23768 1.28463 0.89836 0.88662 0.90875 0.81283 0.73985 0.84391 0.85373 0.87247 0.89750 0.87054 0.87154 0.76716 0.90165 0.90417 0.95874 0.93041 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.66 10.44 71.24 0.74 -0.92 16 2 C 0.06 2.14 7.21 43.07 0.31 2.45 16 3 C -0.31 -11.78 9.58 22.14 0.21 -11.57 16 4 C 0.30 11.89 7.66 131.32 1.01 12.89 16 5 N -0.64 -18.95 5.41 -308.56 -1.67 -20.62 16 6 C 0.52 12.06 7.55 87.65 0.66 12.72 16 7 O -0.54 -15.49 11.19 -3.08 -0.03 -15.53 16 8 C -0.12 -1.38 5.17 29.85 0.15 -1.22 16 9 C -0.08 -1.03 1.89 -10.71 -0.02 -1.05 16 10 H 0.08 1.24 7.93 -2.39 -0.02 1.22 16 11 C -0.11 -0.86 5.32 30.73 0.16 -0.70 16 12 C -0.13 -1.62 6.04 29.71 0.18 -1.44 16 13 C 0.51 10.76 7.71 87.73 0.68 11.44 16 14 O -0.62 -18.92 17.78 -3.02 -0.05 -18.97 16 15 N -0.71 -13.01 5.44 -467.48 -2.55 -15.56 16 16 C 0.10 1.63 6.11 86.49 0.53 2.16 16 17 N -0.37 -16.94 3.60 -348.71 -1.26 -18.20 16 18 C 0.27 13.48 6.01 85.63 0.51 13.99 16 19 C -0.55 -29.17 9.39 25.60 0.24 -28.93 16 20 H 0.05 2.60 7.81 -2.91 -0.02 2.58 16 21 C 0.03 1.49 5.46 84.66 0.46 1.95 16 22 N -0.91 -48.30 13.29 21.45 0.28 -48.01 16 23 Si 0.97 40.53 29.54 68.60 2.03 42.55 16 24 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 25 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 26 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 27 N -0.34 -15.59 12.56 -47.45 -0.60 -16.18 16 28 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.17 6.13 5.83 -2.91 -0.02 6.11 16 32 H 0.42 11.32 7.97 -92.70 -0.74 10.58 16 33 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.13 1.02 8.11 -2.39 -0.02 1.00 16 35 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.08 0.56 8.13 -2.39 -0.02 0.54 16 37 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.40 7.25 8.80 -92.71 -0.82 6.44 16 40 H 0.08 1.61 6.23 -2.39 -0.01 1.60 16 41 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 42 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.05 2.41 7.50 -2.39 -0.02 2.39 16 44 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 Total: -1.00 -74.60 365.52 1.48 -73.12 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: -0.51 Total: 25.62 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 5.83 Total: 11.78 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -5.78 Total: -118.57 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -0.09 Total: -34.50 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.55 kcal Total: -74.60 1.48 -73.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362075620.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.280 kcal (2) G-P(sol) polarization free energy of solvation -74.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds