Wall clock time and date at job start Tue Mar 31 2020 13:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35234 * 126.07018 * 2 1 4 4 C 1.40406 * 107.87334 * 180.02562 * 3 2 1 5 5 N 1.40154 * 125.98084 * 179.97438 * 4 3 2 6 6 C 1.34782 * 119.99381 * 0.02562 * 5 4 3 7 7 O 1.21292 * 120.00277 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99498 * 179.97438 * 6 5 4 9 9 C 1.53005 * 109.46992 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.73389 * 54.59276 * 9 8 6 11 11 C 1.53342 * 109.60449 * 175.00018 * 9 8 6 12 12 C 1.53069 * 108.42527 * 187.28942 * 11 9 8 13 13 C 1.50178 * 109.82098 * 311.14114 * 12 11 9 14 14 O 1.21283 * 118.24507 * 197.54064 * 13 12 11 15 15 N 1.33182 * 123.63409 * 17.53268 * 13 12 11 16 16 C 1.45752 * 124.06115 * 357.82730 * 15 13 12 17 17 N 1.31229 * 108.05030 * 0.23114 * 4 3 2 18 18 N 1.34971 * 126.07225 * 180.02562 * 2 1 3 19 19 C 1.46501 * 125.97278 * 0.02562 * 18 2 1 20 20 C 1.50705 * 109.47333 * 89.99633 * 19 18 2 21 21 H 1.08000 * 119.99807 * 359.97438 * 20 19 18 22 22 C 1.37874 * 119.99955 * 179.97438 * 20 19 18 23 23 N 1.31520 * 120.00173 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99859 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46779 * 60.00419 * 24 22 20 26 26 H 1.48503 * 109.47044 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47077 * 300.00175 * 24 22 20 28 28 H 1.08997 * 109.47009 * 89.98072 * 1 2 3 29 29 H 1.09003 * 109.46810 * 209.97529 * 1 2 3 30 30 H 1.09002 * 109.47307 * 329.97456 * 1 2 3 31 31 H 1.08003 * 126.06601 * 0.02562 * 3 2 1 32 32 H 0.96996 * 120.00529 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.47473 * 60.00186 * 8 6 5 34 34 H 1.08997 * 109.47446 * 299.99859 * 8 6 5 35 35 H 1.08999 * 109.67677 * 67.55520 * 11 9 8 36 36 H 1.09007 * 109.67154 * 307.01925 * 11 9 8 37 37 H 1.09002 * 109.40300 * 71.22794 * 12 11 9 38 38 H 1.09003 * 109.40410 * 191.05547 * 12 11 9 39 39 H 0.96998 * 117.99235 * 177.80255 * 15 13 12 40 40 H 1.09000 * 109.30135 * 258.74096 * 16 15 13 41 41 H 1.08995 * 109.13794 * 139.25044 * 16 15 13 42 42 H 1.08996 * 109.47040 * 209.99779 * 19 18 2 43 43 H 1.09003 * 109.46935 * 329.99519 * 19 18 2 44 44 H 0.96996 * 120.00096 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6546 -0.0006 5 7 4.7735 1.4749 -0.0013 6 6 4.6366 2.8158 -0.0009 7 8 3.5300 3.3125 -0.0005 8 6 5.8585 3.6978 -0.0011 9 6 5.4277 5.1660 0.0000 10 1 4.7542 5.3512 0.8368 11 6 6.6637 6.0647 0.1258 12 6 6.1943 7.5102 0.3081 13 6 5.1620 7.8451 -0.7299 14 8 4.9203 9.0144 -0.9427 15 7 4.4964 6.9289 -1.4309 16 6 4.7161 5.4929 -1.3135 17 7 3.6337 -0.6577 -0.0060 18 7 2.3017 -1.0909 -0.0005 19 6 1.8501 -2.4846 -0.0016 20 6 1.6956 -2.9615 -1.4229 21 1 1.9118 -2.2931 -2.2432 22 6 1.2783 -4.2510 -1.6758 23 7 1.0146 -5.0647 -0.6768 24 14 1.0862 -4.8419 -3.4375 25 1 2.3921 -4.7435 -4.1377 26 1 0.6285 -6.2546 -3.4386 27 1 0.0848 -3.9971 -4.1365 28 1 -0.3633 0.0003 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3634 0.8898 0.5142 31 1 1.9719 2.1211 0.0004 32 1 5.6584 1.0777 -0.0021 33 1 6.4536 3.4941 -0.8913 34 1 6.4542 3.4937 0.8886 35 1 7.2680 5.9864 -0.7780 36 1 7.2536 5.7587 0.9899 37 1 5.7605 7.6276 1.3012 38 1 7.0452 8.1833 0.2028 39 1 3.8234 7.2360 -2.0583 40 1 5.3279 5.1525 -2.1489 41 1 3.7542 4.9809 -1.3391 42 1 2.5845 -3.1049 0.5120 43 1 0.8913 -2.5562 0.5119 44 1 0.7207 -5.9718 -0.8548 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362598900.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:20 Heat of formation + Delta-G solvation = -9.838868 kcal Electronic energy + Delta-G solvation = -26262.101498 eV Core-core repulsion = 22408.477400 eV Total energy + Delta-G solvation = -3853.624098 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.99315 -40.51334 -39.42974 -36.97977 -34.92044 -33.75582 -33.41416 -31.91584 -31.39452 -30.82236 -27.60549 -26.51852 -26.31272 -24.84124 -23.25467 -22.46352 -21.18701 -19.89374 -19.40358 -19.23493 -17.43388 -16.96628 -16.73113 -16.30688 -16.28441 -15.79331 -15.49578 -15.32737 -14.76099 -14.50274 -14.32632 -14.05368 -13.92180 -13.57277 -13.33928 -13.06788 -12.66805 -12.52608 -12.34828 -12.17594 -11.92982 -11.75544 -11.64244 -11.45476 -11.33714 -11.27388 -11.15005 -10.85299 -10.52618 -10.28451 -10.04548 -9.96897 -9.65356 -9.60192 -9.26851 -8.68119 -8.01264 -7.53294 -6.29718 -4.37610 2.20665 2.41320 2.67210 2.83643 3.05543 3.19862 3.24077 3.27865 3.63580 3.75091 4.12485 4.23181 4.25192 4.30583 4.39314 4.62250 4.89516 4.99010 5.02055 5.04098 5.15562 5.20481 5.32385 5.39210 5.40544 5.44106 5.64529 5.69665 5.85330 5.86962 6.05696 6.18281 6.38060 6.46503 6.51288 6.64488 6.87446 7.00061 7.09997 7.37507 7.55985 7.62326 7.84018 7.97124 7.98475 8.14467 8.58363 8.69645 9.28814 10.77579 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026030 B = 0.002260 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.438509 B =12388.659324 C =12479.413454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.091 3.909 3 C -0.290 4.290 4 C 0.261 3.739 5 N -0.630 5.630 6 C 0.516 3.484 7 O -0.516 6.516 8 C -0.129 4.129 9 C -0.088 4.088 10 H 0.093 0.907 11 C -0.121 4.121 12 C -0.134 4.134 13 C 0.517 3.483 14 O -0.567 6.567 15 N -0.715 5.715 16 C 0.105 3.895 17 N -0.320 5.320 18 N -0.316 5.316 19 C 0.258 3.742 20 C -0.537 4.537 21 H 0.063 0.937 22 C 0.066 3.934 23 N -0.892 5.892 24 Si 0.907 3.093 25 H -0.275 1.275 26 H -0.284 1.284 27 H -0.274 1.274 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.159 0.841 32 H 0.411 0.589 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.400 0.600 40 H 0.063 0.937 41 H 0.100 0.900 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.113 18.099 2.608 20.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.040 4.040 3 C -0.321 4.321 4 C 0.008 3.992 5 N -0.278 5.278 6 C 0.302 3.698 7 O -0.390 6.390 8 C -0.170 4.170 9 C -0.108 4.108 10 H 0.112 0.888 11 C -0.158 4.158 12 C -0.174 4.174 13 C 0.304 3.696 14 O -0.446 6.446 15 N -0.365 5.365 16 C -0.019 4.019 17 N -0.151 5.151 18 N -0.098 5.098 19 C 0.141 3.859 20 C -0.575 4.575 21 H 0.082 0.918 22 C -0.138 4.138 23 N -0.529 5.529 24 Si 0.734 3.266 25 H -0.200 1.200 26 H -0.209 1.209 27 H -0.199 1.199 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.177 0.823 32 H 0.246 0.754 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.235 0.765 40 H 0.082 0.918 41 H 0.118 0.882 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.998 17.611 2.712 20.431 hybrid contribution -0.289 -0.205 -1.209 1.259 sum 9.709 17.406 1.503 19.987 Atomic orbital electron populations 1.20338 0.87882 1.02853 1.03198 1.21084 0.94939 0.87204 1.00799 1.21221 0.89686 0.99738 1.21449 1.19012 0.87279 0.89623 1.03284 1.42528 1.07571 1.05214 1.72459 1.20652 0.91514 0.81488 0.76180 1.90634 1.26946 1.73651 1.47779 1.21660 0.96264 0.93482 1.05603 1.21221 0.97399 0.92946 0.99195 0.88844 1.21763 0.97258 0.93330 1.03478 1.21622 0.98554 0.98199 0.98989 1.20178 0.82155 0.85183 0.82111 1.90760 1.67090 1.19035 1.67752 1.45439 1.40845 1.07095 1.43155 1.21698 1.03102 0.80126 0.96972 1.77263 0.99983 1.08576 1.29269 1.49009 1.00972 1.07832 1.52022 1.19696 0.95985 0.71274 0.98958 1.21264 1.47023 0.97947 0.91303 0.91840 1.24928 0.94635 0.96059 0.98143 1.69907 1.44756 1.07149 1.31118 0.86408 0.78806 0.77716 0.83714 1.19987 1.20926 1.19929 0.90404 0.90842 0.90814 0.82334 0.75415 0.87997 0.87655 0.90812 0.90036 0.88077 0.88068 0.76457 0.91850 0.88190 0.93005 0.92778 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 10.11 36.00 0.36 -1.02 16 2 C 0.09 1.84 6.92 -82.28 -0.57 1.27 16 3 C -0.29 -5.56 9.52 -39.84 -0.38 -5.94 16 4 C 0.26 4.89 8.11 -154.38 -1.25 3.64 16 5 N -0.63 -8.27 5.45 -11.13 -0.06 -8.33 16 6 C 0.52 5.72 7.56 -10.98 -0.08 5.63 16 7 O -0.52 -7.31 11.19 5.55 0.06 -7.25 16 8 C -0.13 -0.75 5.17 -27.88 -0.14 -0.89 16 9 C -0.09 -0.56 1.89 -90.48 -0.17 -0.74 16 10 H 0.09 0.73 7.93 -51.93 -0.41 0.32 16 11 C -0.12 -0.56 5.32 -26.52 -0.14 -0.70 16 12 C -0.13 -0.88 6.04 -28.10 -0.17 -1.05 16 13 C 0.52 5.30 7.70 -11.95 -0.09 5.21 16 14 O -0.57 -8.26 17.78 5.55 0.10 -8.16 16 15 N -0.71 -6.27 5.44 -61.43 -0.33 -6.61 16 16 C 0.11 0.80 6.11 -4.49 -0.03 0.78 16 17 N -0.32 -7.04 12.59 31.44 0.40 -6.65 16 18 N -0.32 -7.24 3.59 -58.33 -0.21 -7.45 16 19 C 0.26 6.47 5.99 -5.19 -0.03 6.44 16 20 C -0.54 -14.48 9.39 -34.44 -0.32 -14.80 16 21 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 22 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -24.64 13.29 55.43 0.74 -23.90 16 24 Si 0.91 20.73 29.54 -169.99 -5.02 15.71 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.07 1.22 7.07 -51.93 -0.37 0.86 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.16 2.91 5.92 -52.48 -0.31 2.60 16 32 H 0.41 4.14 8.82 -40.82 -0.36 3.78 16 33 H 0.10 0.39 8.11 -51.93 -0.42 -0.03 16 34 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.31 8.13 -51.93 -0.42 -0.11 16 36 H 0.08 0.25 8.14 -51.92 -0.42 -0.18 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.40 3.38 8.80 -40.82 -0.36 3.02 16 40 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 41 H 0.10 0.96 6.24 -51.93 -0.32 0.64 16 42 H 0.05 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.05 1.34 7.04 -51.93 -0.37 0.98 16 44 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 364.73 15.07 5.50 5.50 Total: -1.00 -34.49 364.73 -8.22 -42.71 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.26 Total: 4.96 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -3.12 Total: -0.52 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 0.53 Total: -52.94 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.16 Total: -15.41 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.49 -8.22 -42.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362598900.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.868 kcal (2) G-P(sol) polarization free energy of solvation -34.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds