Wall clock time and date at job start Tue Mar 31 2020 13:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35234 * 126.07018 * 2 1 4 4 C 1.40406 * 107.87334 * 180.02562 * 3 2 1 5 5 N 1.40154 * 125.98084 * 179.97438 * 4 3 2 6 6 C 1.34782 * 119.99381 * 0.02562 * 5 4 3 7 7 O 1.21292 * 120.00277 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99498 * 179.97438 * 6 5 4 9 9 C 1.53005 * 109.46992 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.73389 * 54.59276 * 9 8 6 11 11 C 1.53342 * 109.60449 * 175.00018 * 9 8 6 12 12 C 1.53069 * 108.42527 * 187.28942 * 11 9 8 13 13 C 1.50178 * 109.82098 * 311.14114 * 12 11 9 14 14 O 1.21283 * 118.24507 * 197.54064 * 13 12 11 15 15 N 1.33182 * 123.63409 * 17.53268 * 13 12 11 16 16 C 1.45752 * 124.06115 * 357.82730 * 15 13 12 17 17 N 1.31229 * 108.05030 * 0.23114 * 4 3 2 18 18 N 1.34971 * 126.07225 * 180.02562 * 2 1 3 19 19 C 1.46501 * 125.97278 * 0.02562 * 18 2 1 20 20 C 1.50705 * 109.47333 * 89.99633 * 19 18 2 21 21 H 1.08000 * 119.99807 * 359.97438 * 20 19 18 22 22 C 1.37874 * 119.99955 * 179.97438 * 20 19 18 23 23 N 1.31520 * 120.00173 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99859 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46779 * 60.00419 * 24 22 20 26 26 H 1.48503 * 109.47044 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47077 * 300.00175 * 24 22 20 28 28 H 1.08997 * 109.47009 * 89.98072 * 1 2 3 29 29 H 1.09003 * 109.46810 * 209.97529 * 1 2 3 30 30 H 1.09002 * 109.47307 * 329.97456 * 1 2 3 31 31 H 1.08003 * 126.06601 * 0.02562 * 3 2 1 32 32 H 0.96996 * 120.00529 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.47473 * 60.00186 * 8 6 5 34 34 H 1.08997 * 109.47446 * 299.99859 * 8 6 5 35 35 H 1.08999 * 109.67677 * 67.55520 * 11 9 8 36 36 H 1.09007 * 109.67154 * 307.01925 * 11 9 8 37 37 H 1.09002 * 109.40300 * 71.22794 * 12 11 9 38 38 H 1.09003 * 109.40410 * 191.05547 * 12 11 9 39 39 H 0.96998 * 117.99235 * 177.80255 * 15 13 12 40 40 H 1.09000 * 109.30135 * 258.74096 * 16 15 13 41 41 H 1.08995 * 109.13794 * 139.25044 * 16 15 13 42 42 H 1.08996 * 109.47040 * 209.99779 * 19 18 2 43 43 H 1.09003 * 109.46935 * 329.99519 * 19 18 2 44 44 H 0.96996 * 120.00096 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6546 -0.0006 5 7 4.7735 1.4749 -0.0013 6 6 4.6366 2.8158 -0.0009 7 8 3.5300 3.3125 -0.0005 8 6 5.8585 3.6978 -0.0011 9 6 5.4277 5.1660 0.0000 10 1 4.7542 5.3512 0.8368 11 6 6.6637 6.0647 0.1258 12 6 6.1943 7.5102 0.3081 13 6 5.1620 7.8451 -0.7299 14 8 4.9203 9.0144 -0.9427 15 7 4.4964 6.9289 -1.4309 16 6 4.7161 5.4929 -1.3135 17 7 3.6337 -0.6577 -0.0060 18 7 2.3017 -1.0909 -0.0005 19 6 1.8501 -2.4846 -0.0016 20 6 1.6956 -2.9615 -1.4229 21 1 1.9118 -2.2931 -2.2432 22 6 1.2783 -4.2510 -1.6758 23 7 1.0146 -5.0647 -0.6768 24 14 1.0862 -4.8419 -3.4375 25 1 2.3921 -4.7435 -4.1377 26 1 0.6285 -6.2546 -3.4386 27 1 0.0848 -3.9971 -4.1365 28 1 -0.3633 0.0003 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3634 0.8898 0.5142 31 1 1.9719 2.1211 0.0004 32 1 5.6584 1.0777 -0.0021 33 1 6.4536 3.4941 -0.8913 34 1 6.4542 3.4937 0.8886 35 1 7.2680 5.9864 -0.7780 36 1 7.2536 5.7587 0.9899 37 1 5.7605 7.6276 1.3012 38 1 7.0452 8.1833 0.2028 39 1 3.8234 7.2360 -2.0583 40 1 5.3279 5.1525 -2.1489 41 1 3.7542 4.9809 -1.3391 42 1 2.5845 -3.1049 0.5120 43 1 0.8913 -2.5562 0.5119 44 1 0.7207 -5.9718 -0.8548 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362598900.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:20 Heat of formation + Delta-G solvation = -34.557919 kcal Electronic energy + Delta-G solvation = -26263.173397 eV Core-core repulsion = 22408.477400 eV Total energy + Delta-G solvation = -3854.695997 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.28299 -41.41196 -40.46963 -37.75826 -36.23870 -35.27135 -34.37914 -33.10006 -32.67200 -32.14522 -28.87762 -27.90814 -27.66837 -25.47971 -24.87696 -23.39672 -22.18480 -21.20570 -20.61156 -19.96488 -18.80091 -18.19386 -17.88327 -17.62373 -17.08597 -17.03209 -16.48593 -16.45931 -16.15942 -15.74813 -15.46293 -15.00837 -14.75477 -14.45960 -14.33266 -14.24691 -13.94698 -13.78259 -13.70737 -13.54557 -13.19579 -13.03902 -12.84684 -12.66114 -12.45408 -12.23977 -12.20512 -12.08215 -11.88067 -11.71680 -11.49965 -11.31192 -10.83188 -10.73634 -10.65296 -10.03501 -9.55053 -9.09939 -8.32570 -6.50509 0.97097 1.37036 1.39410 1.42077 1.49522 1.50837 1.64706 2.28085 2.30451 2.38756 2.44975 2.96968 3.56833 3.58175 3.75683 3.85663 3.89457 4.07388 4.19697 4.43306 4.44547 4.49769 4.58876 4.69946 4.71052 4.77987 4.81710 4.87816 4.91106 4.97018 5.01809 5.02431 5.04395 5.16904 5.23183 5.30155 5.42161 5.53467 5.79533 5.81178 6.00997 6.27011 6.36066 6.39761 6.62055 7.05426 7.20445 7.21372 7.23538 8.72920 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026030 B = 0.002260 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.438509 B =12388.659324 C =12479.413454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.083 3.917 3 C -0.297 4.297 4 C 0.273 3.727 5 N -0.625 5.625 6 C 0.513 3.487 7 O -0.547 6.547 8 C -0.115 4.115 9 C -0.086 4.086 10 H 0.077 0.923 11 C -0.109 4.109 12 C -0.131 4.131 13 C 0.508 3.492 14 O -0.620 6.620 15 N -0.712 5.712 16 C 0.103 3.897 17 N -0.361 5.361 18 N -0.345 5.345 19 C 0.276 3.724 20 C -0.552 4.552 21 H 0.049 0.951 22 C 0.022 3.978 23 N -0.918 5.918 24 Si 0.970 3.030 25 H -0.274 1.274 26 H -0.274 1.274 27 H -0.266 1.266 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.169 0.831 32 H 0.426 0.574 33 H 0.133 0.867 34 H 0.140 0.860 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.397 0.603 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.024 0.976 43 H 0.050 0.950 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.854 18.852 2.222 22.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.048 4.048 3 C -0.327 4.327 4 C 0.019 3.981 5 N -0.276 5.276 6 C 0.302 3.698 7 O -0.423 6.423 8 C -0.154 4.154 9 C -0.106 4.106 10 H 0.096 0.904 11 C -0.147 4.147 12 C -0.171 4.171 13 C 0.297 3.703 14 O -0.504 6.504 15 N -0.360 5.360 16 C -0.020 4.020 17 N -0.191 5.191 18 N -0.128 5.128 19 C 0.157 3.843 20 C -0.591 4.591 21 H 0.068 0.932 22 C -0.179 4.179 23 N -0.556 5.556 24 Si 0.794 3.206 25 H -0.200 1.200 26 H -0.198 1.198 27 H -0.191 1.191 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.186 0.814 32 H 0.264 0.736 33 H 0.151 0.849 34 H 0.158 0.842 35 H 0.105 0.895 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.232 0.768 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.042 0.958 43 H 0.068 0.932 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.764 18.359 2.333 21.929 hybrid contribution -0.831 -0.310 -1.065 1.386 sum 10.933 18.049 1.269 21.140 Atomic orbital electron populations 1.20453 0.85709 1.04079 1.03803 1.21752 0.96555 0.86720 0.99736 1.21434 0.90014 0.99751 1.21543 1.19418 0.89161 0.89169 1.00349 1.42794 1.06662 1.05478 1.72619 1.21791 0.92940 0.80782 0.74239 1.90624 1.28943 1.73923 1.48785 1.21751 0.93799 0.91133 1.08753 1.21208 0.97971 0.93828 0.97564 0.90442 1.21742 0.96399 0.91065 1.05451 1.21680 0.97664 0.99968 0.97763 1.20940 0.82498 0.84467 0.82377 1.90732 1.68956 1.21176 1.69512 1.45537 1.40272 1.07690 1.42510 1.21784 1.02569 0.78921 0.98755 1.77179 0.99868 1.10364 1.31719 1.48761 1.01930 1.07426 1.54634 1.19210 0.94824 0.72585 0.97709 1.21400 1.47568 0.98307 0.91784 0.93226 1.25735 0.93978 0.95970 1.02198 1.69994 1.45038 1.07541 1.33066 0.85421 0.78768 0.77649 0.78752 1.19954 1.19834 1.19093 0.89983 0.91499 0.87648 0.81410 0.73595 0.84860 0.84185 0.89537 0.87135 0.87352 0.87096 0.76816 0.90079 0.90416 0.95810 0.93243 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.69 10.11 71.24 0.72 -1.97 16 2 C 0.08 3.36 6.92 41.38 0.29 3.65 16 3 C -0.30 -11.29 9.52 22.10 0.21 -11.08 16 4 C 0.27 10.13 8.11 133.32 1.08 11.21 16 5 N -0.63 -15.16 5.45 -307.50 -1.68 -16.84 16 6 C 0.51 10.06 7.56 87.66 0.66 10.72 16 7 O -0.55 -14.73 11.19 -3.07 -0.03 -14.77 16 8 C -0.11 -0.81 5.17 29.85 0.15 -0.65 16 9 C -0.09 -0.81 1.89 -10.70 -0.02 -0.83 16 10 H 0.08 1.03 7.93 -2.39 -0.02 1.01 16 11 C -0.11 -0.54 5.32 30.73 0.16 -0.37 16 12 C -0.13 -1.39 6.04 29.71 0.18 -1.22 16 13 C 0.51 10.05 7.70 87.74 0.68 10.72 16 14 O -0.62 -18.37 17.78 -3.04 -0.05 -18.42 16 15 N -0.71 -11.98 5.44 -467.55 -2.54 -14.53 16 16 C 0.10 1.38 6.11 86.49 0.53 1.91 16 17 N -0.36 -16.12 12.59 -54.45 -0.69 -16.81 16 18 N -0.35 -16.26 3.59 -338.44 -1.22 -17.47 16 19 C 0.28 14.37 5.99 85.63 0.51 14.88 16 20 C -0.55 -30.52 9.39 25.60 0.24 -30.28 16 21 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 22 C 0.02 1.20 5.46 84.65 0.46 1.66 16 23 N -0.92 -51.36 13.29 21.45 0.28 -51.07 16 24 Si 0.97 42.39 29.54 68.60 2.03 44.42 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.07 2.25 7.07 -2.39 -0.02 2.24 16 30 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.17 6.05 5.92 -2.91 -0.02 6.03 16 32 H 0.43 7.50 8.82 -92.71 -0.82 6.68 16 33 H 0.13 0.26 8.11 -2.39 -0.02 0.24 16 34 H 0.14 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.09 0.28 8.13 -2.39 -0.02 0.26 16 36 H 0.11 0.01 8.14 -2.38 -0.02 -0.01 16 37 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.40 6.82 8.80 -92.71 -0.82 6.01 16 40 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 41 H 0.08 1.43 6.24 -2.39 -0.01 1.42 16 42 H 0.02 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.05 2.57 7.04 -2.39 -0.02 2.55 16 44 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -78.64 364.73 1.37 -77.27 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -0.58 Total: 19.87 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 5.86 Total: 8.35 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -5.84 Total: -116.72 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -0.09 Total: -33.19 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -78.64 1.37 -77.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362598900.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.711 kcal (2) G-P(sol) polarization free energy of solvation -78.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds