Wall clock time and date at job start Tue Mar 31 2020 13:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35243 * 126.06578 * 2 1 4 4 C 1.40410 * 107.86129 * 180.02562 * 3 2 1 5 5 N 1.40159 * 125.97049 * 180.02562 * 4 3 2 6 6 C 1.34776 * 119.99858 * 359.97438 * 5 4 3 7 7 O 1.21292 * 120.00456 * 0.02562 * 6 5 4 8 8 C 1.50708 * 120.00159 * 179.97438 * 6 5 4 9 9 C 1.52996 * 109.47140 * 180.02562 * 8 6 5 10 10 H 1.09005 * 109.60082 * 305.32001 * 9 8 6 11 11 C 1.53353 * 109.59928 * 185.00369 * 9 8 6 12 12 C 1.53076 * 108.42235 * 172.71313 * 11 9 8 13 13 C 1.50170 * 109.89247 * 48.89556 * 12 11 9 14 14 O 1.21283 * 118.24588 * 162.44188 * 13 12 11 15 15 N 1.33354 * 123.51042 * 342.41495 * 13 12 11 16 16 C 1.45759 * 124.10773 * 2.22735 * 15 13 12 17 17 N 1.31213 * 108.05721 * 0.26680 * 4 3 2 18 18 N 1.34965 * 126.06852 * 180.02562 * 2 1 3 19 19 C 1.46501 * 125.97668 * 359.97438 * 18 2 1 20 20 C 1.50698 * 109.46909 * 90.00077 * 19 18 2 21 21 H 1.08001 * 120.00279 * 359.97438 * 20 19 18 22 22 C 1.37876 * 119.99626 * 179.97438 * 20 19 18 23 23 N 1.31510 * 120.00267 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99679 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47295 * 60.00585 * 24 22 20 26 26 H 1.48504 * 109.47130 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47196 * 300.00138 * 24 22 20 28 28 H 1.09005 * 109.47440 * 89.97392 * 1 2 3 29 29 H 1.08997 * 109.47356 * 209.97421 * 1 2 3 30 30 H 1.09008 * 109.47221 * 329.97434 * 1 2 3 31 31 H 1.07990 * 126.06641 * 0.02562 * 3 2 1 32 32 H 0.97000 * 120.00116 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.46475 * 60.00085 * 8 6 5 34 34 H 1.09003 * 109.46858 * 300.00573 * 8 6 5 35 35 H 1.08997 * 109.67462 * 52.97858 * 11 9 8 36 36 H 1.09000 * 109.70024 * 292.45930 * 11 9 8 37 37 H 1.08996 * 109.39452 * 288.76879 * 12 11 9 38 38 H 1.08992 * 109.32968 * 168.98130 * 12 11 9 39 39 H 0.97004 * 117.94628 * 181.93894 * 15 13 12 40 40 H 1.08999 * 109.30102 * 101.23219 * 16 15 13 41 41 H 1.08996 * 109.29931 * 220.61002 * 16 15 13 42 42 H 1.09005 * 109.47006 * 209.99963 * 19 18 2 43 43 H 1.08997 * 109.47207 * 330.00143 * 19 18 2 44 44 H 0.97006 * 120.00225 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 -0.0006 5 7 4.7734 1.4749 -0.0003 6 6 4.6366 2.8157 0.0001 7 8 3.5301 3.3125 0.0007 8 6 5.8585 3.6979 0.0011 9 6 5.4276 5.1659 0.0020 10 1 4.7552 5.3502 -0.8358 11 6 6.6637 6.0649 -0.1230 12 6 6.1942 7.5107 -0.3032 13 6 5.1629 7.8462 0.7356 14 8 4.9225 9.0156 0.9490 15 7 4.4969 6.9271 1.4356 16 6 4.7165 5.4911 1.3162 17 7 3.6336 -0.6575 -0.0068 18 7 2.3016 -1.0909 -0.0005 19 6 1.8500 -2.4846 -0.0006 20 6 1.6946 -2.9622 -1.4214 21 1 1.9103 -2.2943 -2.2423 22 6 1.2772 -4.2518 -1.6734 23 7 1.0141 -5.0650 -0.6739 24 14 1.0839 -4.8436 -3.4347 25 1 2.3893 -4.7457 -4.1358 26 1 0.6263 -6.2563 -3.4348 27 1 0.0821 -3.9991 -4.1335 28 1 -0.3634 0.0005 -1.0277 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3634 0.8898 0.5143 31 1 1.9718 2.1210 0.0004 32 1 5.6583 1.0777 -0.0011 33 1 6.4542 3.4942 -0.8888 34 1 6.4535 3.4935 0.8912 35 1 7.2532 5.7601 -0.9877 36 1 7.2688 5.9854 0.7801 37 1 5.7601 7.6292 -1.2959 38 1 7.0460 8.1824 -0.1978 39 1 3.8270 7.2336 2.0667 40 1 5.3285 5.1496 2.1510 41 1 3.7562 4.9763 1.3431 42 1 2.5848 -3.1047 0.5129 43 1 0.8915 -2.5560 0.5135 44 1 0.7207 -5.9725 -0.8512 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362598902.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:22 Heat of formation + Delta-G solvation = -34.689541 kcal Electronic energy + Delta-G solvation = -26245.808686 eV Core-core repulsion = 22391.106982 eV Total energy + Delta-G solvation = -3854.701704 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.28319 -41.39861 -40.46543 -37.75765 -36.23914 -35.27233 -34.36931 -33.10059 -32.67169 -32.14704 -28.87701 -27.90739 -27.66585 -25.47623 -24.87740 -23.39625 -22.18290 -21.20523 -20.61118 -19.96155 -18.80073 -18.19044 -17.88051 -17.62387 -17.09626 -17.02493 -16.52582 -16.41712 -16.11385 -15.81265 -15.44143 -14.99902 -14.75485 -14.45873 -14.30870 -14.27639 -13.94420 -13.77944 -13.72757 -13.52086 -13.19767 -13.05004 -12.84040 -12.66108 -12.45910 -12.23999 -12.19844 -12.08709 -11.87764 -11.71699 -11.49907 -11.31199 -10.83167 -10.73663 -10.65346 -10.02551 -9.55082 -9.09943 -8.32598 -6.50523 0.97112 1.37010 1.39429 1.41961 1.49639 1.50823 1.64340 2.27997 2.30502 2.38850 2.44983 2.96940 3.56812 3.58333 3.76010 3.85598 3.89456 4.07453 4.19737 4.43378 4.44610 4.49742 4.58779 4.70065 4.70963 4.78207 4.81843 4.87895 4.91188 4.97018 5.01815 5.02454 5.04300 5.16958 5.23468 5.30220 5.42116 5.53410 5.80535 5.81210 6.01008 6.27009 6.35996 6.39461 6.62020 7.05422 7.20423 7.21424 7.23523 8.72848 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029644 B = 0.002232 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.320904 B =12541.575896 C =12837.407445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.083 3.917 3 C -0.297 4.297 4 C 0.273 3.727 5 N -0.625 5.625 6 C 0.513 3.487 7 O -0.547 6.547 8 C -0.115 4.115 9 C -0.087 4.087 10 H 0.075 0.925 11 C -0.109 4.109 12 C -0.132 4.132 13 C 0.509 3.491 14 O -0.619 6.619 15 N -0.712 5.712 16 C 0.104 3.896 17 N -0.361 5.361 18 N -0.345 5.345 19 C 0.276 3.724 20 C -0.553 4.553 21 H 0.049 0.951 22 C 0.022 3.978 23 N -0.918 5.918 24 Si 0.970 3.030 25 H -0.274 1.274 26 H -0.273 1.273 27 H -0.266 1.266 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.169 0.831 32 H 0.426 0.574 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.397 0.603 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.024 0.976 43 H 0.050 0.950 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.843 18.846 1.900 22.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.048 4.048 3 C -0.327 4.327 4 C 0.019 3.981 5 N -0.276 5.276 6 C 0.302 3.698 7 O -0.423 6.423 8 C -0.154 4.154 9 C -0.106 4.106 10 H 0.094 0.906 11 C -0.146 4.146 12 C -0.172 4.172 13 C 0.298 3.702 14 O -0.503 6.503 15 N -0.361 5.361 16 C -0.019 4.019 17 N -0.191 5.191 18 N -0.128 5.128 19 C 0.157 3.843 20 C -0.591 4.591 21 H 0.067 0.933 22 C -0.179 4.179 23 N -0.556 5.556 24 Si 0.794 3.206 25 H -0.200 1.200 26 H -0.198 1.198 27 H -0.191 1.191 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.186 0.814 32 H 0.264 0.736 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.127 0.873 36 H 0.106 0.894 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.232 0.768 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.042 0.958 43 H 0.068 0.932 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.751 18.354 1.909 21.877 hybrid contribution -0.822 -0.308 -0.352 0.946 sum 10.929 18.046 1.557 21.155 Atomic orbital electron populations 1.20454 0.85712 1.04095 1.03789 1.21752 0.96555 0.86723 0.99731 1.21436 0.90012 0.99747 1.21551 1.19416 0.89160 0.89169 1.00346 1.42795 1.06663 1.05476 1.72618 1.21790 0.92941 0.80782 0.74241 1.90624 1.28947 1.73918 1.48786 1.21753 0.93800 0.91144 1.08746 1.21206 0.97967 0.93830 0.97632 0.90618 1.21741 0.96403 0.91052 1.05452 1.21678 0.97721 0.99991 0.97762 1.20949 0.82440 0.84460 0.82363 1.90731 1.68930 1.21119 1.69485 1.45562 1.40471 1.07639 1.42396 1.21763 1.02602 0.78897 0.98641 1.77174 0.99874 1.10368 1.31713 1.48761 1.01928 1.07425 1.54635 1.19208 0.94828 0.72581 0.97698 1.21399 1.47581 0.98312 0.91794 0.93258 1.25733 0.93974 0.95975 1.02196 1.69992 1.45042 1.07536 1.33045 0.85422 0.78769 0.77650 0.78755 1.19955 1.19819 1.19103 0.90027 0.91485 0.87619 0.81409 0.73596 0.84399 0.84665 0.87286 0.89413 0.87473 0.87099 0.76798 0.89942 0.90344 0.95799 0.93231 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.69 10.11 71.23 0.72 -1.97 16 2 C 0.08 3.36 6.92 41.39 0.29 3.65 16 3 C -0.30 -11.29 9.52 22.11 0.21 -11.08 16 4 C 0.27 10.13 8.11 133.33 1.08 11.21 16 5 N -0.63 -15.17 5.45 -307.51 -1.68 -16.84 16 6 C 0.51 10.07 7.56 87.66 0.66 10.73 16 7 O -0.55 -14.74 11.19 -3.07 -0.03 -14.77 16 8 C -0.11 -0.81 5.17 29.85 0.15 -0.65 16 9 C -0.09 -0.82 1.89 -10.71 -0.02 -0.84 16 10 H 0.08 1.04 7.93 -2.38 -0.02 1.02 16 11 C -0.11 -0.54 5.33 30.74 0.16 -0.38 16 12 C -0.13 -1.42 6.03 29.71 0.18 -1.24 16 13 C 0.51 9.99 7.71 87.71 0.68 10.66 16 14 O -0.62 -18.24 17.78 -3.04 -0.05 -18.29 16 15 N -0.71 -11.71 5.45 -467.32 -2.55 -14.25 16 16 C 0.10 1.35 6.12 86.49 0.53 1.88 16 17 N -0.36 -16.12 12.59 -54.45 -0.69 -16.81 16 18 N -0.35 -16.26 3.59 -338.45 -1.22 -17.47 16 19 C 0.28 14.37 5.99 85.63 0.51 14.89 16 20 C -0.55 -30.57 9.39 25.60 0.24 -30.32 16 21 H 0.05 2.81 7.81 -2.91 -0.02 2.78 16 22 C 0.02 1.20 5.46 84.66 0.46 1.67 16 23 N -0.92 -51.34 13.29 21.45 0.28 -51.06 16 24 Si 0.97 42.42 29.54 68.60 2.03 44.45 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 28 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 29 H 0.07 2.26 7.07 -2.39 -0.02 2.24 16 30 H 0.11 2.71 8.14 -2.38 -0.02 2.69 16 31 H 0.17 6.05 5.91 -2.92 -0.02 6.03 16 32 H 0.43 7.50 8.82 -92.71 -0.82 6.69 16 33 H 0.14 0.25 8.14 -2.38 -0.02 0.23 16 34 H 0.14 0.20 8.10 -2.39 -0.02 0.18 16 35 H 0.11 0.05 8.14 -2.39 -0.02 0.04 16 36 H 0.09 0.27 8.13 -2.39 -0.02 0.25 16 37 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.40 6.61 8.80 -92.71 -0.82 5.79 16 40 H 0.08 0.76 8.08 -2.39 -0.02 0.74 16 41 H 0.08 1.40 6.23 -2.39 -0.01 1.38 16 42 H 0.02 1.35 8.14 -2.38 -0.02 1.33 16 43 H 0.05 2.57 7.04 -2.39 -0.02 2.55 16 44 H 0.27 14.31 8.31 -92.70 -0.77 13.54 16 Total: -1.00 -78.62 364.75 1.37 -77.25 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -0.59 Total: 19.61 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 5.86 Total: 8.18 kcal Atomic # 7 Polarization: -110.60 SS G_CDS: -5.84 Total: -116.44 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -0.09 Total: -33.06 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -78.62 1.37 -77.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362598902.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.560 kcal (2) G-P(sol) polarization free energy of solvation -78.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds