Wall clock time and date at job start Tue Mar 31 2020 12:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00035 * 2 1 4 4 H 1.48495 * 109.47224 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47022 * 299.99861 * 3 2 1 6 6 H 1.48501 * 109.47272 * 59.99612 * 3 2 1 7 7 C 1.37871 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00521 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00138 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.87746 * 300.69532 * 9 7 2 11 11 C 1.55152 * 111.04128 * 176.79441 * 9 7 2 12 12 C 1.54320 * 102.94118 * 206.40570 * 11 9 7 13 13 N 1.47014 * 107.27380 * 22.18831 * 12 11 9 14 14 C 1.34781 * 125.65284 * 181.02071 * 13 12 11 15 15 O 1.21599 * 120.00252 * 180.02562 * 14 13 12 16 16 N 1.34781 * 119.99219 * 0.04827 * 14 13 12 17 17 C 1.40847 * 119.99508 * 179.97438 * 16 14 13 18 18 C 1.40239 * 126.07665 * 0.02562 * 17 16 14 19 19 N 1.30838 * 108.34163 * 179.97438 * 18 17 16 20 20 N 1.40070 * 108.36360 * 0.02562 * 19 18 17 21 21 C 1.46497 * 126.05770 * 180.02562 * 20 19 18 22 22 C 1.53006 * 109.47249 * 304.97580 * 21 20 19 23 23 C 1.53006 * 117.49577 * 243.74919 * 22 21 20 24 24 C 1.52998 * 117.50080 * 175.08707 * 22 21 20 25 25 C 1.35726 * 126.07649 * 179.71630 * 17 16 14 26 26 C 1.47430 * 108.70312 * 1.06155 * 13 12 11 27 27 H 0.97002 * 119.99909 * 359.97438 * 1 2 3 28 28 H 0.96700 * 114.00311 * 62.42930 * 10 9 7 29 29 H 1.09007 * 110.71500 * 324.76880 * 11 9 7 30 30 H 1.09000 * 110.72475 * 88.03847 * 11 9 7 31 31 H 1.09000 * 109.87963 * 262.77148 * 12 11 9 32 32 H 1.09006 * 109.88030 * 141.61202 * 12 11 9 33 33 H 0.96998 * 120.00902 * 359.97438 * 16 14 13 34 34 H 1.07995 * 125.82522 * 0.02562 * 18 17 16 35 35 H 1.08997 * 109.47548 * 64.97447 * 21 20 19 36 36 H 1.09002 * 109.47271 * 184.97348 * 21 20 19 37 37 H 1.08999 * 115.54536 * 29.41388 * 22 21 20 38 38 H 1.08995 * 117.49858 * 359.97438 * 23 22 21 39 39 H 1.08997 * 117.49404 * 145.01971 * 23 22 21 40 40 H 1.08994 * 117.50093 * 214.97537 * 24 22 21 41 41 H 1.09007 * 117.49826 * 359.97438 * 24 22 21 42 42 H 1.08005 * 126.21870 * 0.02562 * 25 17 16 43 43 H 1.08997 * 110.36336 * 217.03107 * 26 13 12 44 44 H 1.09002 * 110.45871 * 94.75588 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4057 -2.5992 1.1484 11 6 2.2247 -3.7045 -0.0798 12 6 1.3626 -4.8018 -0.7387 13 7 0.2753 -4.1270 -1.4624 14 6 -0.7056 -4.7390 -2.1551 15 8 -1.5566 -4.0772 -2.7177 16 7 -0.7434 -6.0845 -2.2238 17 6 -1.7688 -6.7241 -2.9472 18 6 -2.8093 -6.0896 -3.6412 19 7 -3.5617 -7.0104 -4.1869 20 7 -3.0302 -8.2648 -3.8612 21 6 -3.5695 -9.5631 -4.2730 22 6 -5.0364 -9.6636 -3.8497 23 6 -5.4042 -10.7398 -2.8262 24 6 -5.8159 -10.9038 -4.2914 25 6 -1.9221 -8.0638 -3.1015 26 6 0.4361 -2.6699 -1.3057 27 1 -0.4850 0.8401 0.0004 28 1 -0.2835 -1.9221 1.1896 29 1 3.0856 -3.4638 -0.7036 30 1 2.5428 -4.0104 0.9168 31 1 0.9475 -5.4568 0.0273 32 1 1.9687 -5.3807 -1.4357 33 1 -0.0646 -6.6124 -1.7751 34 1 -2.9627 -5.0231 -3.7135 35 1 -3.4966 -9.6599 -5.3562 36 1 -2.9988 -10.3610 -3.7978 37 1 -5.5780 -8.7188 -3.8034 38 1 -4.6012 -11.3764 -2.4548 39 1 -6.1881 -10.5031 -2.1068 40 1 -6.8704 -10.7751 -4.5353 41 1 -5.2837 -11.6481 -4.8840 42 1 -1.2813 -8.8308 -2.6922 43 1 -0.5374 -2.1888 -1.2112 44 1 0.9836 -2.2539 -2.1515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365039979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:20 Heat of formation + Delta-G solvation = 39.181522 kcal Electronic energy + Delta-G solvation = -26572.844319 eV Core-core repulsion = 22721.345904 eV Total energy + Delta-G solvation = -3851.498415 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.21101 -39.57560 -37.89778 -37.34172 -34.39812 -34.22867 -32.41042 -32.19105 -30.27367 -29.18071 -27.80793 -26.62494 -24.94099 -22.84654 -22.78974 -22.03429 -21.02045 -20.63146 -19.64777 -19.11706 -17.62281 -17.36180 -17.03407 -16.10781 -15.64794 -15.35836 -15.06595 -15.03709 -14.48259 -14.42750 -14.09576 -13.85863 -13.50613 -13.07309 -13.01756 -12.82169 -12.67357 -12.12273 -12.03533 -11.93406 -11.63632 -11.52690 -11.05767 -10.89518 -10.83696 -10.69897 -10.61894 -10.52457 -10.45234 -10.35743 -10.17566 -9.58343 -9.39608 -9.28077 -8.69453 -8.38242 -7.92669 -7.39056 -6.27850 -4.37123 1.86674 2.35839 2.90895 3.09312 3.21175 3.29695 3.32650 3.40059 3.83558 4.11481 4.25966 4.40902 4.45000 4.54622 4.70591 4.82783 4.99001 4.99583 5.14190 5.23027 5.29027 5.38342 5.48223 5.61121 5.63350 5.68621 5.71919 5.79088 5.87952 5.99060 6.11381 6.43592 6.48589 6.68812 6.85286 6.93375 6.97336 7.14892 7.19781 7.30502 7.53904 7.74841 7.82938 8.02728 8.44151 8.66677 9.03688 9.31494 9.41233 10.79633 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032091 B = 0.002363 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.299406 B =11844.693900 C =12149.860480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.537 4.537 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.102 3.898 13 N -0.623 5.623 14 C 0.719 3.281 15 O -0.584 6.584 16 N -0.664 5.664 17 C 0.039 3.961 18 C 0.054 3.946 19 N -0.286 5.286 20 N -0.376 5.376 21 C 0.176 3.824 22 C -0.169 4.169 23 C -0.178 4.178 24 C -0.172 4.172 25 C -0.002 4.002 26 C 0.112 3.888 27 H 0.270 0.730 28 H 0.383 0.617 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.402 0.598 34 H 0.208 0.792 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.172 0.828 43 H 0.085 0.915 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.059 -20.767 -5.672 21.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.392 6.392 11 C -0.154 4.154 12 C -0.021 4.021 13 N -0.360 5.360 14 C 0.422 3.578 15 O -0.462 6.462 16 N -0.312 5.312 17 C -0.067 4.067 18 C -0.134 4.134 19 N -0.108 5.108 20 N -0.162 5.162 21 C 0.055 3.945 22 C -0.188 4.188 23 C -0.215 4.215 24 C -0.209 4.209 25 C -0.148 4.148 26 C -0.010 4.010 27 H 0.080 0.920 28 H 0.234 0.766 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.237 0.763 34 H 0.225 0.775 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.137 0.863 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.189 0.811 43 H 0.103 0.897 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.520 -20.994 -6.711 22.721 hybrid contribution 1.208 1.176 0.657 1.809 sum -4.312 -19.819 -6.054 21.166 Atomic orbital electron populations 1.69663 1.05995 1.27865 1.49555 1.25078 0.95038 0.99781 0.93336 0.86351 0.80016 0.82766 0.77764 1.19605 1.20769 1.20774 1.21492 0.93659 0.90016 1.52366 0.91455 1.19633 0.86250 0.91615 0.81733 1.86087 1.48952 1.58053 1.46123 1.22595 0.97694 0.94932 1.00157 1.21984 0.88958 0.96393 0.94760 1.47908 1.26268 1.09737 1.52042 1.15381 0.81875 0.80569 0.80022 1.90762 1.40260 1.63917 1.51308 1.41987 1.29038 1.05418 1.54781 1.17541 0.94854 0.90347 1.03939 1.24614 0.91984 1.00862 0.95936 1.77323 1.22401 0.87661 1.23410 1.48179 1.20943 1.05560 1.41515 1.21112 0.92546 0.80212 1.00641 1.22626 0.95656 0.95677 1.04807 1.23105 1.03871 1.01989 0.92563 1.22978 1.00925 0.99356 0.97667 1.21685 0.94531 0.95903 1.02717 1.23216 1.02658 0.75141 0.99979 0.91983 0.76596 0.90357 0.90689 0.92479 0.92965 0.76314 0.77547 0.89640 0.88854 0.86335 0.88599 0.88592 0.88386 0.88503 0.81093 0.89678 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.62 10.72 55.43 0.59 -23.02 16 2 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 3 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.54 -13.72 8.26 -34.44 -0.28 -14.00 16 8 H 0.07 1.69 7.78 -52.48 -0.41 1.28 16 9 C 0.25 5.87 0.87 -89.63 -0.08 5.79 16 10 O -0.58 -14.67 13.15 -35.23 -0.46 -15.13 16 11 C -0.12 -2.20 6.13 -24.90 -0.15 -2.35 16 12 C 0.10 1.70 6.15 -3.07 -0.02 1.68 16 13 N -0.62 -12.53 3.33 -176.24 -0.59 -13.11 16 14 C 0.72 14.38 8.46 -86.91 -0.74 13.65 16 15 O -0.58 -13.53 13.75 5.28 0.07 -13.46 16 16 N -0.66 -10.32 5.44 -14.39 -0.08 -10.40 16 17 C 0.04 0.59 6.90 -83.86 -0.58 0.02 16 18 C 0.05 0.92 10.84 -17.22 -0.19 0.73 16 19 N -0.29 -4.47 12.23 30.70 0.38 -4.09 16 20 N -0.38 -4.58 3.70 -61.02 -0.23 -4.81 16 21 C 0.18 1.44 6.80 -4.04 -0.03 1.41 16 22 C -0.17 -1.41 5.93 -90.61 -0.54 -1.94 16 23 C -0.18 -1.21 10.18 -26.69 -0.27 -1.48 16 24 C -0.17 -1.05 10.25 -26.69 -0.27 -1.32 16 25 C 0.00 -0.02 11.52 -16.67 -0.19 -0.21 16 26 C 0.11 2.63 5.50 -2.53 -0.01 2.62 16 27 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 28 H 0.38 10.00 7.32 45.56 0.33 10.34 16 29 H 0.08 1.40 8.03 -51.93 -0.42 0.98 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.40 4.95 7.81 -40.82 -0.32 4.63 16 34 H 0.21 3.93 5.91 -52.49 -0.31 3.62 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.51 7.81 -51.93 -0.41 0.10 16 37 H 0.12 1.29 7.92 -51.93 -0.41 0.88 16 38 H 0.10 0.54 8.03 -51.93 -0.42 0.12 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.17 1.31 8.06 -52.48 -0.42 0.89 16 43 H 0.08 2.27 7.47 -51.93 -0.39 1.88 16 44 H 0.06 1.45 8.03 -51.93 -0.42 1.03 16 LS Contribution 365.73 15.07 5.51 5.51 Total: -1.00 -30.92 365.73 -8.94 -39.86 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -5.68 Total: 17.17 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: -3.44 Total: 6.32 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.08 Total: -55.44 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.39 Total: -28.59 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.92 -8.94 -39.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365039979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.046 kcal (2) G-P(sol) polarization free energy of solvation -30.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds