Wall clock time and date at job start Tue Mar 31 2020 12:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00035 * 2 1 4 4 H 1.48495 * 109.47224 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47022 * 299.99861 * 3 2 1 6 6 H 1.48501 * 109.47272 * 59.99612 * 3 2 1 7 7 C 1.37871 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00521 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00138 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.87746 * 300.69532 * 9 7 2 11 11 C 1.55152 * 111.04128 * 176.79441 * 9 7 2 12 12 C 1.54320 * 102.94118 * 206.40570 * 11 9 7 13 13 N 1.47014 * 107.27380 * 22.18831 * 12 11 9 14 14 C 1.34781 * 125.65284 * 181.02071 * 13 12 11 15 15 O 1.21599 * 120.00252 * 180.02562 * 14 13 12 16 16 N 1.34781 * 119.99219 * 0.04827 * 14 13 12 17 17 C 1.40847 * 119.99508 * 179.97438 * 16 14 13 18 18 C 1.40239 * 126.07665 * 0.02562 * 17 16 14 19 19 N 1.30838 * 108.34163 * 179.97438 * 18 17 16 20 20 N 1.40070 * 108.36360 * 0.02562 * 19 18 17 21 21 C 1.46497 * 126.05770 * 180.02562 * 20 19 18 22 22 C 1.53006 * 109.47249 * 304.97580 * 21 20 19 23 23 C 1.53006 * 117.49577 * 243.74919 * 22 21 20 24 24 C 1.52998 * 117.50080 * 175.08707 * 22 21 20 25 25 C 1.35726 * 126.07649 * 179.71630 * 17 16 14 26 26 C 1.47430 * 108.70312 * 1.06155 * 13 12 11 27 27 H 0.97002 * 119.99909 * 359.97438 * 1 2 3 28 28 H 0.96700 * 114.00311 * 62.42930 * 10 9 7 29 29 H 1.09007 * 110.71500 * 324.76880 * 11 9 7 30 30 H 1.09000 * 110.72475 * 88.03847 * 11 9 7 31 31 H 1.09000 * 109.87963 * 262.77148 * 12 11 9 32 32 H 1.09006 * 109.88030 * 141.61202 * 12 11 9 33 33 H 0.96998 * 120.00902 * 359.97438 * 16 14 13 34 34 H 1.07995 * 125.82522 * 0.02562 * 18 17 16 35 35 H 1.08997 * 109.47548 * 64.97447 * 21 20 19 36 36 H 1.09002 * 109.47271 * 184.97348 * 21 20 19 37 37 H 1.08999 * 115.54536 * 29.41388 * 22 21 20 38 38 H 1.08995 * 117.49858 * 359.97438 * 23 22 21 39 39 H 1.08997 * 117.49404 * 145.01971 * 23 22 21 40 40 H 1.08994 * 117.50093 * 214.97537 * 24 22 21 41 41 H 1.09007 * 117.49826 * 359.97438 * 24 22 21 42 42 H 1.08005 * 126.21870 * 0.02562 * 25 17 16 43 43 H 1.08997 * 110.36336 * 217.03107 * 26 13 12 44 44 H 1.09002 * 110.45871 * 94.75588 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4057 -2.5992 1.1484 11 6 2.2247 -3.7045 -0.0798 12 6 1.3626 -4.8018 -0.7387 13 7 0.2753 -4.1270 -1.4624 14 6 -0.7056 -4.7390 -2.1551 15 8 -1.5566 -4.0772 -2.7177 16 7 -0.7434 -6.0845 -2.2238 17 6 -1.7688 -6.7241 -2.9472 18 6 -2.8093 -6.0896 -3.6412 19 7 -3.5617 -7.0104 -4.1869 20 7 -3.0302 -8.2648 -3.8612 21 6 -3.5695 -9.5631 -4.2730 22 6 -5.0364 -9.6636 -3.8497 23 6 -5.4042 -10.7398 -2.8262 24 6 -5.8159 -10.9038 -4.2914 25 6 -1.9221 -8.0638 -3.1015 26 6 0.4361 -2.6699 -1.3057 27 1 -0.4850 0.8401 0.0004 28 1 -0.2835 -1.9221 1.1896 29 1 3.0856 -3.4638 -0.7036 30 1 2.5428 -4.0104 0.9168 31 1 0.9475 -5.4568 0.0273 32 1 1.9687 -5.3807 -1.4357 33 1 -0.0646 -6.6124 -1.7751 34 1 -2.9627 -5.0231 -3.7135 35 1 -3.4966 -9.6599 -5.3562 36 1 -2.9988 -10.3610 -3.7978 37 1 -5.5780 -8.7188 -3.8034 38 1 -4.6012 -11.3764 -2.4548 39 1 -6.1881 -10.5031 -2.1068 40 1 -6.8704 -10.7751 -4.5353 41 1 -5.2837 -11.6481 -4.8840 42 1 -1.2813 -8.8308 -2.6922 43 1 -0.5374 -2.1888 -1.2112 44 1 0.9836 -2.2539 -2.1515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365039979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:19 Heat of formation + Delta-G solvation = 17.034297 kcal Electronic energy + Delta-G solvation = -26573.804694 eV Core-core repulsion = 22721.345904 eV Total energy + Delta-G solvation = -3852.458790 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.33560 -41.05498 -39.12565 -38.37682 -36.06113 -35.66719 -34.17647 -33.39950 -31.83565 -30.32294 -29.47308 -27.70172 -26.66893 -24.36870 -23.30183 -23.02965 -22.08567 -21.61124 -21.40876 -20.37499 -19.22089 -18.75968 -18.42391 -17.24562 -16.94386 -16.84083 -16.44533 -16.27980 -16.00184 -15.67893 -15.13682 -15.03645 -14.76049 -14.61881 -14.57343 -13.93739 -13.81228 -13.65926 -13.47333 -13.28488 -12.85445 -12.72013 -12.49183 -12.38062 -12.29464 -12.18588 -12.05746 -11.84666 -11.73176 -11.35972 -11.24784 -11.13907 -10.98756 -10.64463 -10.31253 -10.29027 -9.52768 -8.58598 -8.23118 -6.39585 0.84271 1.35652 1.42796 1.45653 1.56136 1.61089 1.79609 2.39092 2.40386 2.85608 3.03275 3.09204 3.47124 3.82785 3.88675 3.94459 4.03498 4.07522 4.12170 4.21520 4.26496 4.37526 4.39995 4.57438 4.61568 4.67608 4.77845 4.78592 4.80256 5.00571 5.08635 5.12254 5.16789 5.23574 5.25523 5.34604 5.41223 5.48881 5.78828 5.82997 6.05212 6.11767 6.20146 6.67511 6.69180 7.04989 7.31392 7.38417 7.55911 8.82501 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032091 B = 0.002363 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.299406 B =11844.693900 C =12149.860480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.024 3.976 3 Si 0.964 3.036 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.553 4.553 8 H 0.071 0.929 9 C 0.231 3.769 10 O -0.588 6.588 11 C -0.110 4.110 12 C 0.104 3.896 13 N -0.628 5.628 14 C 0.711 3.289 15 O -0.628 6.628 16 N -0.641 5.641 17 C -0.001 4.001 18 C 0.024 3.976 19 N -0.312 5.312 20 N -0.365 5.365 21 C 0.168 3.832 22 C -0.191 4.191 23 C -0.174 4.174 24 C -0.157 4.157 25 C 0.040 3.960 26 C 0.127 3.873 27 H 0.268 0.732 28 H 0.374 0.626 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.422 0.578 34 H 0.174 0.826 35 H 0.096 0.904 36 H 0.136 0.864 37 H 0.083 0.917 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.228 0.772 43 H 0.041 0.959 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.146 -24.814 -5.553 25.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.177 4.177 3 Si 0.789 3.211 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.207 1.207 7 C -0.591 4.591 8 H 0.089 0.911 9 C 0.190 3.810 10 O -0.396 6.396 11 C -0.148 4.148 12 C -0.018 4.018 13 N -0.364 5.364 14 C 0.413 3.587 15 O -0.509 6.509 16 N -0.290 5.290 17 C -0.106 4.106 18 C -0.162 4.162 19 N -0.135 5.135 20 N -0.150 5.150 21 C 0.049 3.951 22 C -0.210 4.210 23 C -0.211 4.211 24 C -0.194 4.194 25 C -0.109 4.109 26 C 0.003 3.997 27 H 0.078 0.922 28 H 0.223 0.777 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.260 0.740 34 H 0.191 0.809 35 H 0.114 0.886 36 H 0.153 0.847 37 H 0.101 0.899 38 H 0.135 0.865 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.137 0.863 42 H 0.244 0.756 43 H 0.060 0.940 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.595 -25.121 -6.593 26.219 hybrid contribution 0.506 2.288 0.569 2.412 sum -3.089 -22.833 -6.024 23.815 Atomic orbital electron populations 1.69790 1.07218 1.28294 1.50323 1.25840 0.95731 1.02902 0.93202 0.85416 0.79261 0.79027 0.77362 1.18576 1.21041 1.20718 1.21849 0.94012 0.91190 1.52035 0.91112 1.19890 0.86806 0.93309 0.80950 1.86075 1.48886 1.57622 1.47026 1.22599 0.97280 0.93445 1.01480 1.22196 0.88015 0.95726 0.95844 1.47801 1.27478 1.08476 1.52690 1.15589 0.81339 0.81969 0.79789 1.90755 1.41836 1.65398 1.52961 1.41549 1.29464 1.03602 1.54425 1.17740 0.95251 0.91706 1.05934 1.24235 0.93915 1.00050 0.98022 1.77268 1.22944 0.89082 1.24235 1.48668 1.20513 1.05767 1.40020 1.21590 0.92728 0.78974 1.01838 1.22480 0.95968 0.95114 1.07403 1.23206 1.04189 1.01040 0.92673 1.23080 1.00817 0.97984 0.97551 1.22438 0.93470 0.95368 0.99590 1.22713 0.99962 0.77395 0.99590 0.92217 0.77708 0.89160 0.89530 0.90524 0.88683 0.74041 0.80922 0.88625 0.84660 0.89903 0.86516 0.89419 0.88589 0.86254 0.75614 0.94030 0.93923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.55 10.72 21.44 0.23 -50.32 16 2 C 0.02 1.25 5.30 84.65 0.45 1.70 16 3 Si 0.96 41.97 29.54 68.60 2.03 43.99 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.55 -28.50 8.26 25.60 0.21 -28.29 16 8 H 0.07 3.51 7.78 -2.91 -0.02 3.49 16 9 C 0.23 11.02 0.87 -10.15 -0.01 11.01 16 10 O -0.59 -30.20 13.15 -148.98 -1.96 -32.16 16 11 C -0.11 -3.98 6.13 31.78 0.19 -3.78 16 12 C 0.10 3.16 6.15 86.73 0.53 3.69 16 13 N -0.63 -25.25 3.33 -829.75 -2.76 -28.01 16 14 C 0.71 28.94 8.46 179.05 1.51 30.45 16 15 O -0.63 -31.08 13.75 -4.03 -0.06 -31.14 16 16 N -0.64 -18.99 5.44 -317.69 -1.73 -20.72 16 17 C 0.00 -0.04 6.90 37.59 0.26 0.22 16 18 C 0.02 0.86 10.84 85.33 0.92 1.78 16 19 N -0.31 -9.94 12.23 -56.78 -0.69 -10.63 16 20 N -0.36 -8.01 3.70 -346.98 -1.29 -9.30 16 21 C 0.17 2.13 6.80 86.38 0.59 2.72 16 22 C -0.19 -2.83 5.93 -10.79 -0.06 -2.89 16 23 C -0.17 -1.87 10.18 30.62 0.31 -1.56 16 24 C -0.16 -1.50 10.25 30.62 0.31 -1.18 16 25 C 0.04 0.79 11.52 83.49 0.96 1.75 16 26 C 0.13 6.23 5.50 86.85 0.48 6.71 16 27 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 28 H 0.37 20.42 7.32 -74.06 -0.54 19.88 16 29 H 0.09 3.01 8.03 -2.38 -0.02 2.99 16 30 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.42 8.86 7.81 -92.71 -0.72 8.14 16 34 H 0.17 7.34 5.91 -2.91 -0.02 7.33 16 35 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.14 0.63 7.81 -2.39 -0.02 0.62 16 37 H 0.08 1.85 7.92 -2.39 -0.02 1.83 16 38 H 0.12 0.77 8.03 -2.39 -0.02 0.76 16 39 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.12 0.62 8.14 -2.38 -0.02 0.60 16 42 H 0.23 1.86 8.06 -2.91 -0.02 1.83 16 43 H 0.04 2.37 7.47 -2.39 -0.02 2.35 16 44 H 0.04 2.17 8.03 -2.39 -0.02 2.15 16 Total: -1.00 -73.95 365.73 0.21 -73.73 By element: Atomic # 1 Polarization: 42.44 SS G_CDS: -0.23 Total: 42.21 kcal Atomic # 6 Polarization: 15.67 SS G_CDS: 6.67 Total: 22.33 kcal Atomic # 7 Polarization: -112.74 SS G_CDS: -6.24 Total: -118.97 kcal Atomic # 8 Polarization: -61.28 SS G_CDS: -2.01 Total: -63.29 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 43.99 kcal Total: -73.95 0.21 -73.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365039979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.769 kcal (2) G-P(sol) polarization free energy of solvation -73.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds