Wall clock time and date at job start Tue Mar 31 2020 12:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99696 * 2 1 4 4 H 1.48504 * 109.47142 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46986 * 299.99725 * 3 2 1 6 6 H 1.48500 * 109.47717 * 59.99885 * 3 2 1 7 7 C 1.37879 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99808 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99594 * 0.02562 * 7 2 1 10 10 O 1.42897 * 110.88885 * 62.42398 * 9 7 2 11 11 C 1.55159 * 111.03476 * 186.32884 * 9 7 2 12 12 C 1.54340 * 103.01966 * 153.39286 * 11 9 7 13 13 N 1.47017 * 107.26418 * 338.14224 * 12 11 9 14 14 C 1.34776 * 125.64701 * 178.85100 * 13 12 11 15 15 O 1.21599 * 120.00104 * 179.68993 * 14 13 12 16 16 N 1.34777 * 120.00009 * 359.68956 * 14 13 12 17 17 C 1.40845 * 120.00203 * 180.02562 * 16 14 13 18 18 C 1.40230 * 126.07710 * 359.68699 * 17 16 14 19 19 N 1.30839 * 108.34437 * 180.26311 * 18 17 16 20 20 N 1.40066 * 108.36261 * 0.02562 * 19 18 17 21 21 C 1.46503 * 126.06020 * 180.02562 * 20 19 18 22 22 C 1.53000 * 109.46860 * 304.95697 * 21 20 19 23 23 C 1.53002 * 117.49945 * 243.74432 * 22 21 20 24 24 C 1.53001 * 117.49692 * 175.08388 * 22 21 20 25 25 C 1.35735 * 126.07479 * 180.02562 * 17 16 14 26 26 C 1.47425 * 108.70649 * 358.58128 * 13 12 11 27 27 H 0.97002 * 120.00246 * 0.02562 * 1 2 3 28 28 H 0.96707 * 114.00163 * 297.56660 * 10 9 7 29 29 H 1.08999 * 110.71563 * 271.95284 * 11 9 7 30 30 H 1.08995 * 110.72204 * 35.22304 * 11 9 7 31 31 H 1.08995 * 109.98649 * 218.66312 * 12 11 9 32 32 H 1.09006 * 109.77284 * 97.49603 * 12 11 9 33 33 H 0.97007 * 119.99734 * 359.97438 * 16 14 13 34 34 H 1.08001 * 125.82701 * 0.24605 * 18 17 16 35 35 H 1.09001 * 109.46977 * 64.95185 * 21 20 19 36 36 H 1.08995 * 109.47616 * 184.95845 * 21 20 19 37 37 H 1.09006 * 115.55128 * 29.41559 * 22 21 20 38 38 H 1.09000 * 117.49548 * 0.02562 * 23 22 21 39 39 H 1.09003 * 117.49574 * 145.02299 * 23 22 21 40 40 H 1.09001 * 117.49665 * 214.97873 * 24 22 21 41 41 H 1.09000 * 117.50255 * 359.97438 * 24 22 21 42 42 H 1.08004 * 126.21541 * 359.71051 * 25 17 16 43 43 H 1.09004 * 110.36531 * 143.19866 * 26 13 12 44 44 H 1.08998 * 110.36920 * 265.41325 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4616 -2.6316 -1.1831 11 6 2.2191 -3.7011 0.1608 12 6 1.3287 -4.7801 0.8127 13 7 0.2056 -4.0864 1.4598 14 6 -0.8077 -4.6796 2.1215 15 8 -1.6841 -4.0031 2.6245 16 7 -0.8497 -6.0227 2.2257 17 6 -1.9089 -6.6427 2.9167 18 6 -2.9780 -5.9898 3.5470 19 7 -3.7546 -6.8955 4.0841 20 7 -3.2101 -8.1581 3.8172 21 6 -3.7687 -9.4449 4.2396 22 6 -3.9651 -9.4422 5.7569 23 6 -3.1462 -10.4409 6.5771 24 6 -4.6488 -10.6594 6.3829 25 6 -2.0728 -7.9781 3.0964 26 6 0.3746 -2.6342 1.2707 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2245 -1.9564 -1.2760 29 1 2.5843 -4.0342 -0.8106 30 1 3.0493 -3.4427 0.8181 31 1 1.9001 -5.3350 1.5567 32 1 0.9534 -5.4599 0.0477 33 1 -0.1508 -6.5624 1.8241 34 1 -3.1335 -4.9217 3.5831 35 1 -4.7293 -9.6026 3.7491 36 1 -3.0838 -10.2466 3.9634 37 1 -4.1645 -8.4679 6.2034 38 1 -2.4671 -11.0996 6.0357 39 1 -2.8071 -10.1239 7.5634 40 1 -5.2975 -10.4860 7.2415 41 1 -4.9590 -11.4620 5.7138 42 1 -1.4181 -8.7561 2.7323 43 1 -0.5930 -2.1565 1.1165 44 1 0.8804 -2.1959 2.1310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365039980.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:23 Heat of formation + Delta-G solvation = 39.203831 kcal Electronic energy + Delta-G solvation = -26568.624578 eV Core-core repulsion = 22717.127130 eV Total energy + Delta-G solvation = -3851.497447 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.20826 -39.57023 -37.90353 -37.34085 -34.39252 -34.22420 -32.40784 -32.22688 -30.26754 -29.17751 -27.78420 -26.62397 -24.94129 -22.84811 -22.79838 -22.03442 -21.01752 -20.63201 -19.65444 -19.11301 -17.61595 -17.35998 -17.01796 -16.09827 -15.67775 -15.35779 -15.09174 -14.97919 -14.51317 -14.40298 -14.11452 -13.85072 -13.50369 -13.06277 -13.02752 -12.81918 -12.66797 -12.11839 -12.03822 -11.94222 -11.66010 -11.51695 -11.05517 -10.91243 -10.83424 -10.69768 -10.61257 -10.52746 -10.46001 -10.36022 -10.17923 -9.57106 -9.36995 -9.27830 -8.70236 -8.38205 -7.92332 -7.38638 -6.27253 -4.37100 1.86967 2.36069 2.91281 3.09901 3.21252 3.29805 3.32726 3.39295 3.84183 4.11177 4.26077 4.41289 4.44438 4.53887 4.70195 4.83040 4.98848 4.99840 5.14388 5.22100 5.29239 5.38342 5.47016 5.61236 5.63287 5.67824 5.71539 5.78617 5.87318 5.98250 6.11599 6.44039 6.49079 6.69129 6.86747 6.94411 6.97658 7.15284 7.21243 7.31179 7.55454 7.74806 7.83329 8.03130 8.44926 8.67194 9.04463 9.30208 9.38496 10.79759 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033000 B = 0.002354 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.282828 B =11889.614228 C =12238.334547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.538 4.538 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.102 3.898 13 N -0.624 5.624 14 C 0.719 3.281 15 O -0.584 6.584 16 N -0.664 5.664 17 C 0.039 3.961 18 C 0.054 3.946 19 N -0.286 5.286 20 N -0.376 5.376 21 C 0.176 3.824 22 C -0.169 4.169 23 C -0.179 4.179 24 C -0.172 4.172 25 C -0.002 4.002 26 C 0.113 3.887 27 H 0.270 0.730 28 H 0.382 0.618 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.402 0.598 34 H 0.208 0.792 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.172 0.828 43 H 0.087 0.913 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.248 -20.500 7.620 22.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.207 3.793 10 O -0.391 6.391 11 C -0.153 4.153 12 C -0.021 4.021 13 N -0.360 5.360 14 C 0.421 3.579 15 O -0.462 6.462 16 N -0.312 5.312 17 C -0.067 4.067 18 C -0.134 4.134 19 N -0.108 5.108 20 N -0.162 5.162 21 C 0.055 3.945 22 C -0.188 4.188 23 C -0.216 4.216 24 C -0.209 4.209 25 C -0.149 4.149 26 C -0.008 4.008 27 H 0.080 0.920 28 H 0.231 0.769 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.237 0.763 34 H 0.225 0.775 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.137 0.863 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.189 0.811 43 H 0.106 0.894 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.760 -20.700 8.598 22.915 hybrid contribution 1.280 1.162 -0.568 1.820 sum -3.480 -19.538 8.030 21.409 Atomic orbital electron populations 1.69723 1.05957 1.27839 1.49412 1.25086 0.95045 0.99773 0.93362 0.86357 0.80024 0.82796 0.77762 1.19611 1.20781 1.20773 1.21478 0.93658 0.89985 1.52472 0.91468 1.19641 0.86641 0.91585 0.81402 1.86102 1.51560 1.57183 1.44288 1.22592 0.97537 0.95118 1.00095 1.21988 0.88295 0.96214 0.95629 1.47925 1.22933 1.09991 1.55150 1.15378 0.82122 0.80634 0.79722 1.90763 1.39256 1.62887 1.53321 1.41991 1.25841 1.05656 1.57751 1.17540 0.93771 0.90514 1.04842 1.24613 0.91534 1.00966 0.96281 1.77322 1.22313 0.87510 1.23656 1.48178 1.18996 1.05674 1.43345 1.21114 0.99709 0.80564 0.93141 1.22629 1.05798 0.96579 0.93746 1.23103 0.94075 1.02446 1.01929 1.22978 0.95492 0.99218 1.03228 1.21687 0.93513 0.96088 1.03563 1.23196 1.02745 0.75225 0.99644 0.92014 0.76859 0.90703 0.90362 0.92953 0.92511 0.76324 0.77543 0.89602 0.88850 0.86348 0.88603 0.88625 0.88387 0.88485 0.81096 0.89444 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.58 10.69 55.43 0.59 -22.98 16 2 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 3 Si 0.90 20.19 29.54 -169.99 -5.02 15.16 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.54 -13.73 8.27 -34.44 -0.28 -14.01 16 8 H 0.07 1.68 7.79 -52.49 -0.41 1.28 16 9 C 0.25 5.85 0.87 -89.62 -0.08 5.77 16 10 O -0.58 -14.57 13.16 -35.23 -0.46 -15.03 16 11 C -0.12 -2.20 6.13 -24.89 -0.15 -2.35 16 12 C 0.10 1.70 6.15 -3.06 -0.02 1.68 16 13 N -0.62 -12.57 3.33 -176.23 -0.59 -13.15 16 14 C 0.72 14.42 8.46 -86.92 -0.74 13.68 16 15 O -0.58 -13.57 13.75 5.28 0.07 -13.49 16 16 N -0.66 -10.35 5.44 -14.39 -0.08 -10.43 16 17 C 0.04 0.60 6.90 -83.86 -0.58 0.02 16 18 C 0.05 0.92 10.84 -17.23 -0.19 0.73 16 19 N -0.29 -4.48 12.23 30.70 0.38 -4.10 16 20 N -0.38 -4.59 3.70 -61.02 -0.23 -4.82 16 21 C 0.18 1.44 6.80 -4.04 -0.03 1.41 16 22 C -0.17 -1.39 5.92 -90.62 -0.54 -1.92 16 23 C -0.18 -1.18 10.18 -26.69 -0.27 -1.45 16 24 C -0.17 -1.04 10.25 -26.69 -0.27 -1.31 16 25 C 0.00 -0.02 11.52 -16.67 -0.19 -0.21 16 26 C 0.11 2.68 5.38 -2.53 -0.01 2.67 16 27 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 28 H 0.38 9.85 7.57 45.56 0.34 10.20 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.08 1.40 8.03 -51.93 -0.42 0.98 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.40 4.96 7.81 -40.82 -0.32 4.64 16 34 H 0.21 3.94 5.91 -52.49 -0.31 3.63 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.51 7.81 -51.93 -0.41 0.10 16 37 H 0.12 1.27 7.92 -51.93 -0.41 0.86 16 38 H 0.10 0.52 8.03 -51.93 -0.42 0.10 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.17 1.32 8.06 -52.48 -0.42 0.89 16 43 H 0.09 2.34 7.33 -51.93 -0.38 1.96 16 44 H 0.06 1.45 8.03 -51.93 -0.42 1.03 16 LS Contribution 365.71 15.07 5.51 5.51 Total: -1.00 -30.91 365.71 -8.93 -39.83 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -5.66 Total: 17.05 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: -3.45 Total: 6.44 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.08 Total: -55.48 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.39 Total: -28.52 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.91 -8.93 -39.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365039980.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.038 kcal (2) G-P(sol) polarization free energy of solvation -30.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds