Wall clock time and date at job start Tue Mar 31 2020 12:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99696 * 2 1 4 4 H 1.48504 * 109.47142 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46986 * 299.99725 * 3 2 1 6 6 H 1.48500 * 109.47717 * 59.99885 * 3 2 1 7 7 C 1.37879 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99808 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99594 * 0.02562 * 7 2 1 10 10 O 1.42897 * 110.88885 * 62.42398 * 9 7 2 11 11 C 1.55159 * 111.03476 * 186.32884 * 9 7 2 12 12 C 1.54340 * 103.01966 * 153.39286 * 11 9 7 13 13 N 1.47017 * 107.26418 * 338.14224 * 12 11 9 14 14 C 1.34776 * 125.64701 * 178.85100 * 13 12 11 15 15 O 1.21599 * 120.00104 * 179.68993 * 14 13 12 16 16 N 1.34777 * 120.00009 * 359.68956 * 14 13 12 17 17 C 1.40845 * 120.00203 * 180.02562 * 16 14 13 18 18 C 1.40230 * 126.07710 * 359.68699 * 17 16 14 19 19 N 1.30839 * 108.34437 * 180.26311 * 18 17 16 20 20 N 1.40066 * 108.36261 * 0.02562 * 19 18 17 21 21 C 1.46503 * 126.06020 * 180.02562 * 20 19 18 22 22 C 1.53000 * 109.46860 * 304.95697 * 21 20 19 23 23 C 1.53002 * 117.49945 * 243.74432 * 22 21 20 24 24 C 1.53001 * 117.49692 * 175.08388 * 22 21 20 25 25 C 1.35735 * 126.07479 * 180.02562 * 17 16 14 26 26 C 1.47425 * 108.70649 * 358.58128 * 13 12 11 27 27 H 0.97002 * 120.00246 * 0.02562 * 1 2 3 28 28 H 0.96707 * 114.00163 * 297.56660 * 10 9 7 29 29 H 1.08999 * 110.71563 * 271.95284 * 11 9 7 30 30 H 1.08995 * 110.72204 * 35.22304 * 11 9 7 31 31 H 1.08995 * 109.98649 * 218.66312 * 12 11 9 32 32 H 1.09006 * 109.77284 * 97.49603 * 12 11 9 33 33 H 0.97007 * 119.99734 * 359.97438 * 16 14 13 34 34 H 1.08001 * 125.82701 * 0.24605 * 18 17 16 35 35 H 1.09001 * 109.46977 * 64.95185 * 21 20 19 36 36 H 1.08995 * 109.47616 * 184.95845 * 21 20 19 37 37 H 1.09006 * 115.55128 * 29.41559 * 22 21 20 38 38 H 1.09000 * 117.49548 * 0.02562 * 23 22 21 39 39 H 1.09003 * 117.49574 * 145.02299 * 23 22 21 40 40 H 1.09001 * 117.49665 * 214.97873 * 24 22 21 41 41 H 1.09000 * 117.50255 * 359.97438 * 24 22 21 42 42 H 1.08004 * 126.21541 * 359.71051 * 25 17 16 43 43 H 1.09004 * 110.36531 * 143.19866 * 26 13 12 44 44 H 1.08998 * 110.36920 * 265.41325 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4616 -2.6316 -1.1831 11 6 2.2191 -3.7011 0.1608 12 6 1.3287 -4.7801 0.8127 13 7 0.2056 -4.0864 1.4598 14 6 -0.8077 -4.6796 2.1215 15 8 -1.6841 -4.0031 2.6245 16 7 -0.8497 -6.0227 2.2257 17 6 -1.9089 -6.6427 2.9167 18 6 -2.9780 -5.9898 3.5470 19 7 -3.7546 -6.8955 4.0841 20 7 -3.2101 -8.1581 3.8172 21 6 -3.7687 -9.4449 4.2396 22 6 -3.9651 -9.4422 5.7569 23 6 -3.1462 -10.4409 6.5771 24 6 -4.6488 -10.6594 6.3829 25 6 -2.0728 -7.9781 3.0964 26 6 0.3746 -2.6342 1.2707 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2245 -1.9564 -1.2760 29 1 2.5843 -4.0342 -0.8106 30 1 3.0493 -3.4427 0.8181 31 1 1.9001 -5.3350 1.5567 32 1 0.9534 -5.4599 0.0477 33 1 -0.1508 -6.5624 1.8241 34 1 -3.1335 -4.9217 3.5831 35 1 -4.7293 -9.6026 3.7491 36 1 -3.0838 -10.2466 3.9634 37 1 -4.1645 -8.4679 6.2034 38 1 -2.4671 -11.0996 6.0357 39 1 -2.8071 -10.1239 7.5634 40 1 -5.2975 -10.4860 7.2415 41 1 -4.9590 -11.4620 5.7138 42 1 -1.4181 -8.7561 2.7323 43 1 -0.5930 -2.1565 1.1165 44 1 0.8804 -2.1959 2.1310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365039980.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:22 Heat of formation + Delta-G solvation = 17.034025 kcal Electronic energy + Delta-G solvation = -26569.585932 eV Core-core repulsion = 22717.127130 eV Total energy + Delta-G solvation = -3852.458802 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.33505 -41.05245 -39.12432 -38.37530 -36.05443 -35.66306 -34.20976 -33.39802 -31.82951 -30.32061 -29.45226 -27.70212 -26.67030 -24.37082 -23.29984 -23.02801 -22.08484 -21.60886 -21.41461 -20.37338 -19.20891 -18.74906 -18.42235 -17.24501 -16.94670 -16.85798 -16.44949 -16.24367 -16.00928 -15.66442 -15.18952 -15.01326 -14.71414 -14.65628 -14.56168 -13.95103 -13.78682 -13.66784 -13.50062 -13.27488 -12.85241 -12.71007 -12.49799 -12.37722 -12.30858 -12.18581 -12.05651 -11.84861 -11.72863 -11.35760 -11.22449 -11.12696 -10.98494 -10.65479 -10.31298 -10.28805 -9.52547 -8.58502 -8.22555 -6.39627 0.84321 1.35921 1.42711 1.45640 1.56052 1.61215 1.79857 2.39174 2.40570 2.85767 3.03577 3.09538 3.47322 3.82253 3.88764 3.94525 4.03462 4.07598 4.11391 4.21842 4.26389 4.37397 4.40156 4.57521 4.61632 4.67647 4.78110 4.79377 4.80552 5.00697 5.10171 5.12708 5.17189 5.23795 5.25625 5.34987 5.41609 5.49800 5.78584 5.83125 6.05589 6.12089 6.20441 6.67759 6.69325 7.05296 7.29857 7.37214 7.56314 8.82498 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033000 B = 0.002354 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.282828 B =11889.614228 C =12238.334547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.024 3.976 3 Si 0.963 3.037 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.553 4.553 8 H 0.070 0.930 9 C 0.231 3.769 10 O -0.587 6.587 11 C -0.110 4.110 12 C 0.104 3.896 13 N -0.629 5.629 14 C 0.711 3.289 15 O -0.628 6.628 16 N -0.641 5.641 17 C -0.001 4.001 18 C 0.024 3.976 19 N -0.312 5.312 20 N -0.364 5.364 21 C 0.168 3.832 22 C -0.190 4.190 23 C -0.173 4.173 24 C -0.158 4.158 25 C 0.040 3.960 26 C 0.129 3.871 27 H 0.268 0.732 28 H 0.372 0.628 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.421 0.579 34 H 0.174 0.826 35 H 0.094 0.906 36 H 0.136 0.864 37 H 0.083 0.917 38 H 0.117 0.883 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.118 0.882 42 H 0.227 0.773 43 H 0.044 0.956 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.490 -24.565 7.426 25.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.177 4.177 3 Si 0.789 3.211 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.591 4.591 8 H 0.088 0.912 9 C 0.191 3.809 10 O -0.394 6.394 11 C -0.148 4.148 12 C -0.018 4.018 13 N -0.365 5.365 14 C 0.413 3.587 15 O -0.509 6.509 16 N -0.291 5.291 17 C -0.106 4.106 18 C -0.162 4.162 19 N -0.135 5.135 20 N -0.150 5.150 21 C 0.048 3.952 22 C -0.209 4.209 23 C -0.210 4.210 24 C -0.195 4.195 25 C -0.109 4.109 26 C 0.006 3.994 27 H 0.077 0.923 28 H 0.221 0.779 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.260 0.740 34 H 0.191 0.809 35 H 0.112 0.888 36 H 0.154 0.846 37 H 0.102 0.898 38 H 0.135 0.865 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.137 0.863 42 H 0.244 0.756 43 H 0.062 0.938 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.988 -24.845 8.411 26.400 hybrid contribution 0.644 2.283 -0.427 2.411 sum -2.344 -22.561 7.984 24.047 Atomic orbital electron populations 1.69854 1.07177 1.28253 1.50173 1.25841 0.95729 1.02872 0.93214 0.85427 0.79262 0.79079 0.77365 1.18603 1.20720 1.21044 1.21830 0.93986 0.91172 1.52152 0.91175 1.19886 0.87224 0.93265 0.80573 1.86091 1.51439 1.56772 1.45139 1.22596 0.97163 0.93660 1.01367 1.22201 0.87069 0.95528 0.97011 1.47818 1.24200 1.08765 1.55720 1.15586 0.81555 0.82027 0.79525 1.90755 1.40832 1.64397 1.54964 1.41552 1.26367 1.03852 1.57281 1.17738 0.94003 0.91864 1.07012 1.24233 0.93503 1.00155 0.98331 1.77267 1.22894 0.88982 1.24390 1.48667 1.18669 1.05828 1.41794 1.21591 1.01243 0.79362 0.92971 1.22475 1.08519 0.95916 0.94023 1.23206 0.94769 1.01551 1.01444 1.23080 0.95317 0.98122 1.03024 1.22440 0.92602 0.95602 1.00232 1.22684 1.00169 0.77445 0.99144 0.92268 0.77926 0.89478 0.89242 0.88751 0.90459 0.74047 0.80928 0.88751 0.84650 0.89846 0.86516 0.89319 0.88575 0.86339 0.75615 0.93751 0.94167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.46 10.69 21.45 0.23 -50.24 16 2 C 0.02 1.28 5.29 84.66 0.45 1.72 16 3 Si 0.96 41.97 29.54 68.60 2.03 43.99 16 4 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.55 -28.52 8.27 25.60 0.21 -28.31 16 8 H 0.07 3.49 7.79 -2.91 -0.02 3.46 16 9 C 0.23 11.00 0.87 -10.15 -0.01 10.99 16 10 O -0.59 -29.89 13.16 -148.98 -1.96 -31.85 16 11 C -0.11 -3.97 6.13 31.79 0.19 -3.78 16 12 C 0.10 3.15 6.15 86.74 0.53 3.69 16 13 N -0.63 -25.34 3.33 -829.71 -2.76 -28.10 16 14 C 0.71 29.01 8.46 179.05 1.51 30.53 16 15 O -0.63 -31.17 13.75 -4.03 -0.06 -31.23 16 16 N -0.64 -19.04 5.44 -317.71 -1.73 -20.77 16 17 C 0.00 -0.04 6.90 37.59 0.26 0.22 16 18 C 0.02 0.86 10.84 85.32 0.92 1.78 16 19 N -0.31 -9.96 12.23 -56.78 -0.69 -10.65 16 20 N -0.36 -8.03 3.70 -346.97 -1.29 -9.32 16 21 C 0.17 2.14 6.80 86.38 0.59 2.72 16 22 C -0.19 -2.77 5.92 -10.79 -0.06 -2.83 16 23 C -0.17 -1.77 10.18 30.62 0.31 -1.46 16 24 C -0.16 -1.48 10.25 30.62 0.31 -1.16 16 25 C 0.04 0.79 11.52 83.49 0.96 1.75 16 26 C 0.13 6.35 5.38 86.86 0.47 6.82 16 27 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 28 H 0.37 20.11 7.57 -74.05 -0.56 19.55 16 29 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.09 3.00 8.03 -2.39 -0.02 2.98 16 31 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.42 8.89 7.81 -92.70 -0.72 8.16 16 34 H 0.17 7.36 5.91 -2.91 -0.02 7.34 16 35 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 36 H 0.14 0.64 7.81 -2.39 -0.02 0.62 16 37 H 0.08 1.83 7.92 -2.38 -0.02 1.81 16 38 H 0.12 0.72 8.03 -2.39 -0.02 0.70 16 39 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.10 0.93 8.14 -2.39 -0.02 0.92 16 41 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.23 1.87 8.06 -2.91 -0.02 1.85 16 43 H 0.04 2.53 7.33 -2.39 -0.02 2.52 16 44 H 0.04 2.07 8.03 -2.39 -0.02 2.05 16 Total: -1.00 -73.86 365.71 0.18 -73.68 By element: Atomic # 1 Polarization: 42.04 SS G_CDS: -0.25 Total: 41.79 kcal Atomic # 6 Polarization: 16.04 SS G_CDS: 6.66 Total: 22.69 kcal Atomic # 7 Polarization: -112.84 SS G_CDS: -6.24 Total: -119.08 kcal Atomic # 8 Polarization: -61.06 SS G_CDS: -2.02 Total: -63.08 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 43.99 kcal Total: -73.86 0.18 -73.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365039980.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.711 kcal (2) G-P(sol) polarization free energy of solvation -73.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds