Wall clock time and date at job start Tue Mar 31 2020 13:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35250 * 126.06988 * 2 1 4 4 C 1.40402 * 107.86758 * 180.02562 * 3 2 1 5 5 N 1.40193 * 125.97146 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00003 * 0.02562 * 5 4 3 7 7 O 1.21592 * 119.99678 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99663 * 179.97438 * 6 5 4 9 9 C 1.46509 * 119.99569 * 179.97438 * 8 6 5 10 10 H 1.09001 * 110.66659 * 322.73012 * 9 8 6 11 11 C 1.55002 * 110.74841 * 199.31418 * 9 8 6 12 12 C 1.55824 * 102.78790 * 241.68177 * 11 9 8 13 13 H 1.08998 * 115.38976 * 201.89331 * 12 11 9 14 14 C 1.55811 * 105.98097 * 72.86809 * 12 11 9 15 15 C 1.55970 * 102.34565 * 287.97247 * 14 12 11 16 16 C 1.55818 * 102.86533 * 359.16204 * 15 14 12 17 17 H 1.08990 * 115.93750 * 202.14796 * 16 15 14 18 18 O 1.46539 * 101.24134 * 328.16629 * 16 15 14 19 19 N 1.31215 * 108.05581 * 359.97438 * 4 3 2 20 20 N 1.34967 * 126.07379 * 180.02562 * 2 1 3 21 21 C 1.46508 * 125.97178 * 359.97438 * 20 2 1 22 22 C 1.50703 * 109.46903 * 270.02203 * 21 20 2 23 23 H 1.07993 * 120.00060 * 0.02562 * 22 21 20 24 24 C 1.37879 * 119.99582 * 179.97438 * 22 21 20 25 25 N 1.31509 * 119.99593 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 119.99974 * 0.02562 * 24 22 21 27 27 H 1.48497 * 109.47236 * 89.99745 * 26 24 22 28 28 H 1.48500 * 109.46826 * 209.99663 * 26 24 22 29 29 H 1.48494 * 109.47108 * 329.99390 * 26 24 22 30 30 H 1.09004 * 109.46629 * 89.98396 * 1 2 3 31 31 H 1.09005 * 109.46766 * 209.97691 * 1 2 3 32 32 H 1.08994 * 109.47353 * 329.97871 * 1 2 3 33 33 H 1.07998 * 126.06432 * 359.97438 * 3 2 1 34 34 H 0.97003 * 120.00001 * 179.97438 * 5 4 3 35 35 H 0.96998 * 120.00854 * 0.02562 * 8 6 5 36 36 H 1.09005 * 110.74788 * 0.02562 * 11 9 8 37 37 H 1.08995 * 110.74930 * 123.35249 * 11 9 8 38 38 H 1.09004 * 110.75239 * 45.45826 * 14 12 11 39 39 H 1.09007 * 110.74862 * 168.80553 * 14 12 11 40 40 H 1.09007 * 110.21411 * 241.04151 * 15 14 12 41 41 H 1.08997 * 111.21276 * 117.75136 * 15 14 12 42 42 H 1.08991 * 109.47172 * 30.02588 * 21 20 2 43 43 H 1.08997 * 109.46595 * 150.02309 * 21 20 2 44 44 H 0.97005 * 119.99929 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6371 0.6546 -0.0006 5 7 4.7737 1.4752 -0.0013 6 6 4.6369 2.8161 -0.0009 7 8 3.5276 3.3139 -0.0005 8 7 5.7297 3.6048 -0.0011 9 6 5.5810 5.0624 -0.0012 10 1 4.7345 5.3626 -0.6188 11 6 6.8860 5.7475 -0.4808 12 6 7.3085 6.5911 0.7593 13 1 7.9723 7.4299 0.5498 14 6 7.8332 5.5710 1.8136 15 6 6.5204 4.8722 2.2837 16 6 5.4225 5.6012 1.4523 17 1 4.4118 5.5607 1.8580 18 8 6.0027 6.9408 1.3252 19 7 3.6337 -0.6575 -0.0004 20 7 2.3017 -1.0909 -0.0005 21 6 1.8501 -2.4846 -0.0006 22 6 1.6952 -2.9625 1.4202 23 1 1.9112 -2.2948 2.2411 24 6 1.2769 -4.2520 1.6721 25 7 1.1413 -4.6689 2.9119 26 14 0.9027 -5.4066 0.2521 27 1 2.1353 -6.1445 -0.1238 28 1 -0.1469 -6.3732 0.6635 29 1 0.4222 -4.6199 -0.9121 30 1 -0.3633 0.0003 -1.0277 31 1 -0.3633 -0.8902 0.5135 32 1 -0.3634 0.8897 0.5141 33 1 1.9720 2.1211 -0.0004 34 1 5.6587 1.0780 -0.0013 35 1 6.6147 3.2077 -0.0018 36 1 7.6468 5.0044 -0.7201 37 1 6.6914 6.3918 -1.3381 38 1 8.5012 4.8452 1.3497 39 1 8.3315 6.0862 2.6349 40 1 6.3683 5.0349 3.3508 41 1 6.5361 3.8071 2.0529 42 1 0.8916 -2.5559 -0.5144 43 1 2.5848 -3.1045 -0.5144 44 1 0.8473 -5.5761 3.0891 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365046977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:33 Heat of formation + Delta-G solvation = 30.904459 kcal Electronic energy + Delta-G solvation = -26801.426276 eV Core-core repulsion = 22949.568941 eV Total energy + Delta-G solvation = -3851.857335 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.45017 -40.68769 -39.37227 -35.11737 -34.65197 -33.30372 -32.05305 -31.51187 -31.10562 -30.47412 -29.09853 -27.01976 -26.38511 -23.26409 -22.57165 -22.13877 -21.35415 -20.30919 -19.96091 -19.60807 -17.99006 -17.12065 -17.04699 -16.62245 -16.20906 -15.83014 -15.23299 -15.08935 -14.58914 -14.38747 -14.34380 -13.83583 -13.65554 -13.19208 -12.98689 -12.76393 -12.60610 -12.40667 -12.29997 -12.17048 -11.93680 -11.90597 -11.62107 -11.52276 -11.28685 -11.19837 -10.80975 -10.70979 -10.57221 -10.44266 -10.10095 -9.96264 -9.75556 -9.58575 -9.20328 -8.79163 -7.98845 -7.45185 -6.26990 -4.30148 2.25398 2.55368 3.01178 3.14871 3.20881 3.22208 3.38422 3.60926 3.75662 4.09075 4.18687 4.20529 4.22546 4.35259 4.55893 4.68296 4.80985 4.84671 5.01153 5.01583 5.26463 5.33203 5.39057 5.52129 5.58332 5.62010 5.68487 5.70883 5.78000 5.87278 6.03541 6.06659 6.15398 6.31358 6.38777 6.45601 6.48241 6.60305 6.77427 7.00453 7.28400 7.44432 7.84376 7.87246 8.30995 8.51465 8.59008 8.78909 9.28257 10.85528 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028516 B = 0.002471 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.674217 B =11330.347638 C =11583.710763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.095 3.905 3 C -0.285 4.285 4 C 0.285 3.715 5 N -0.643 5.643 6 C 0.713 3.287 7 O -0.562 6.562 8 N -0.732 5.732 9 C 0.140 3.860 10 H 0.104 0.896 11 C -0.154 4.154 12 C 0.060 3.940 13 H 0.130 0.870 14 C -0.148 4.148 15 C -0.149 4.149 16 C 0.055 3.945 17 H 0.136 0.864 18 O -0.371 6.371 19 N -0.321 5.321 20 N -0.318 5.318 21 C 0.232 3.768 22 C -0.541 4.541 23 H 0.081 0.919 24 C 0.079 3.921 25 N -0.887 5.887 26 Si 0.874 3.126 27 H -0.271 1.271 28 H -0.280 1.280 29 H -0.264 1.264 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.162 0.838 34 H 0.406 0.594 35 H 0.397 0.603 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.050 0.950 43 H 0.045 0.955 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.145 19.856 -6.999 24.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.036 4.036 3 C -0.316 4.316 4 C 0.032 3.968 5 N -0.293 5.293 6 C 0.412 3.588 7 O -0.437 6.437 8 N -0.390 5.390 9 C 0.034 3.966 10 H 0.122 0.878 11 C -0.192 4.192 12 C 0.003 3.997 13 H 0.148 0.852 14 C -0.186 4.186 15 C -0.187 4.187 16 C -0.004 4.004 17 H 0.153 0.847 18 O -0.289 6.289 19 N -0.152 5.152 20 N -0.100 5.100 21 C 0.113 3.887 22 C -0.579 4.579 23 H 0.099 0.901 24 C -0.125 4.125 25 N -0.524 5.524 26 Si 0.700 3.300 27 H -0.197 1.197 28 H -0.205 1.205 29 H -0.188 1.188 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.180 0.820 34 H 0.241 0.759 35 H 0.232 0.768 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.647 19.222 -6.827 23.489 hybrid contribution 0.467 -0.776 -0.509 1.039 sum 12.114 18.446 -7.335 23.255 Atomic orbital electron populations 1.20404 0.87865 1.04182 1.02439 1.21055 0.94907 0.86929 1.00672 1.21257 0.89638 0.99880 1.20834 1.18646 0.86609 0.89194 1.02393 1.41381 1.07593 1.03707 1.76608 1.15636 0.84794 0.80384 0.77962 1.90885 1.23422 1.73415 1.55970 1.45079 1.07573 1.05775 1.80572 1.22390 0.98995 0.78036 0.97170 0.87839 1.23490 0.96877 0.99854 0.98987 1.24674 0.86533 0.96489 0.92037 0.85236 1.23418 0.97634 0.98250 0.99288 1.23366 0.94103 1.00550 1.00720 1.25101 0.98543 0.81575 0.95226 0.84686 1.90118 1.28681 1.26394 1.83713 1.77246 0.99486 1.08437 1.29981 1.48495 1.01151 1.06980 1.53415 1.19990 0.95279 0.73775 0.99661 1.21190 1.47319 0.98997 0.90425 0.90096 1.24813 0.94485 0.97462 0.95788 1.69874 1.45706 1.18113 1.18660 0.86890 0.78973 0.81465 0.82689 1.19659 1.20547 1.18842 0.91105 0.89869 0.90347 0.82022 0.75915 0.76828 0.89774 0.89434 0.90715 0.90580 0.90842 0.90011 0.93217 0.93698 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.51 9.89 36.01 0.36 -1.15 16 2 C 0.10 1.96 6.93 -82.28 -0.57 1.40 16 3 C -0.29 -5.77 9.52 -39.83 -0.38 -6.15 16 4 C 0.29 5.66 8.11 -154.36 -1.25 4.41 16 5 N -0.64 -9.49 5.46 -15.51 -0.08 -9.58 16 6 C 0.71 9.85 8.53 -86.92 -0.74 9.10 16 7 O -0.56 -9.74 13.21 5.28 0.07 -9.67 16 8 N -0.73 -6.64 3.62 -56.17 -0.20 -6.84 16 9 C 0.14 1.25 3.14 -65.36 -0.21 1.04 16 10 H 0.10 1.11 7.71 -51.93 -0.40 0.71 16 11 C -0.15 -0.93 6.30 -24.17 -0.15 -1.08 16 12 C 0.06 0.40 5.66 -23.72 -0.13 0.27 16 13 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 14 C -0.15 -0.93 6.61 -23.64 -0.16 -1.08 16 15 C -0.15 -1.24 6.43 -23.64 -0.15 -1.39 16 16 C 0.05 0.53 5.59 -23.72 -0.13 0.40 16 17 H 0.14 1.46 8.14 -51.93 -0.42 1.04 16 18 O -0.37 -3.79 11.64 -35.23 -0.41 -4.20 16 19 N -0.32 -7.21 12.59 31.44 0.40 -6.81 16 20 N -0.32 -7.34 3.59 -58.32 -0.21 -7.55 16 21 C 0.23 5.56 4.88 -5.19 -0.03 5.53 16 22 C -0.54 -15.09 9.94 -34.44 -0.34 -15.43 16 23 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 24 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 25 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 26 Si 0.87 20.06 27.47 -169.99 -4.67 15.39 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 29 H -0.26 -5.66 6.54 56.52 0.37 -5.29 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.08 1.49 7.71 -51.93 -0.40 1.09 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.16 3.21 5.91 -52.49 -0.31 2.90 16 34 H 0.41 4.69 8.84 -40.82 -0.36 4.33 16 35 H 0.40 2.44 8.05 -40.82 -0.33 2.11 16 36 H 0.08 0.37 7.38 -51.93 -0.38 -0.01 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.35 7.84 -51.93 -0.41 -0.05 16 39 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 40 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 41 H 0.08 0.68 6.47 -51.93 -0.34 0.34 16 42 H 0.05 1.11 6.70 -51.93 -0.35 0.76 16 43 H 0.05 1.07 7.57 -51.93 -0.39 0.67 16 44 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 356.81 15.07 5.38 5.38 Total: -1.00 -34.44 356.81 -9.16 -43.60 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -6.22 Total: 7.84 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -3.98 Total: -2.06 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.67 Total: -56.27 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.34 Total: -13.87 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.67 Total: 15.39 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.44 -9.16 -43.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365046977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.503 kcal (2) G-P(sol) polarization free energy of solvation -34.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds