Wall clock time and date at job start Tue Mar 31 2020 13:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35250 * 126.06988 * 2 1 4 4 C 1.40402 * 107.86758 * 180.02562 * 3 2 1 5 5 N 1.40193 * 125.97146 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00003 * 0.02562 * 5 4 3 7 7 O 1.21592 * 119.99678 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99663 * 179.97438 * 6 5 4 9 9 C 1.46509 * 119.99569 * 179.97438 * 8 6 5 10 10 H 1.09001 * 110.66659 * 322.73012 * 9 8 6 11 11 C 1.55002 * 110.74841 * 199.31418 * 9 8 6 12 12 C 1.55824 * 102.78790 * 241.68177 * 11 9 8 13 13 H 1.08998 * 115.38976 * 201.89331 * 12 11 9 14 14 C 1.55811 * 105.98097 * 72.86809 * 12 11 9 15 15 C 1.55970 * 102.34565 * 287.97247 * 14 12 11 16 16 C 1.55818 * 102.86533 * 359.16204 * 15 14 12 17 17 H 1.08990 * 115.93750 * 202.14796 * 16 15 14 18 18 O 1.46539 * 101.24134 * 328.16629 * 16 15 14 19 19 N 1.31215 * 108.05581 * 359.97438 * 4 3 2 20 20 N 1.34967 * 126.07379 * 180.02562 * 2 1 3 21 21 C 1.46508 * 125.97178 * 359.97438 * 20 2 1 22 22 C 1.50703 * 109.46903 * 270.02203 * 21 20 2 23 23 H 1.07993 * 120.00060 * 0.02562 * 22 21 20 24 24 C 1.37879 * 119.99582 * 179.97438 * 22 21 20 25 25 N 1.31509 * 119.99593 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 119.99974 * 0.02562 * 24 22 21 27 27 H 1.48497 * 109.47236 * 89.99745 * 26 24 22 28 28 H 1.48500 * 109.46826 * 209.99663 * 26 24 22 29 29 H 1.48494 * 109.47108 * 329.99390 * 26 24 22 30 30 H 1.09004 * 109.46629 * 89.98396 * 1 2 3 31 31 H 1.09005 * 109.46766 * 209.97691 * 1 2 3 32 32 H 1.08994 * 109.47353 * 329.97871 * 1 2 3 33 33 H 1.07998 * 126.06432 * 359.97438 * 3 2 1 34 34 H 0.97003 * 120.00001 * 179.97438 * 5 4 3 35 35 H 0.96998 * 120.00854 * 0.02562 * 8 6 5 36 36 H 1.09005 * 110.74788 * 0.02562 * 11 9 8 37 37 H 1.08995 * 110.74930 * 123.35249 * 11 9 8 38 38 H 1.09004 * 110.75239 * 45.45826 * 14 12 11 39 39 H 1.09007 * 110.74862 * 168.80553 * 14 12 11 40 40 H 1.09007 * 110.21411 * 241.04151 * 15 14 12 41 41 H 1.08997 * 111.21276 * 117.75136 * 15 14 12 42 42 H 1.08991 * 109.47172 * 30.02588 * 21 20 2 43 43 H 1.08997 * 109.46595 * 150.02309 * 21 20 2 44 44 H 0.97005 * 119.99929 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6371 0.6546 -0.0006 5 7 4.7737 1.4752 -0.0013 6 6 4.6369 2.8161 -0.0009 7 8 3.5276 3.3139 -0.0005 8 7 5.7297 3.6048 -0.0011 9 6 5.5810 5.0624 -0.0012 10 1 4.7345 5.3626 -0.6188 11 6 6.8860 5.7475 -0.4808 12 6 7.3085 6.5911 0.7593 13 1 7.9723 7.4299 0.5498 14 6 7.8332 5.5710 1.8136 15 6 6.5204 4.8722 2.2837 16 6 5.4225 5.6012 1.4523 17 1 4.4118 5.5607 1.8580 18 8 6.0027 6.9408 1.3252 19 7 3.6337 -0.6575 -0.0004 20 7 2.3017 -1.0909 -0.0005 21 6 1.8501 -2.4846 -0.0006 22 6 1.6952 -2.9625 1.4202 23 1 1.9112 -2.2948 2.2411 24 6 1.2769 -4.2520 1.6721 25 7 1.1413 -4.6689 2.9119 26 14 0.9027 -5.4066 0.2521 27 1 2.1353 -6.1445 -0.1238 28 1 -0.1469 -6.3732 0.6635 29 1 0.4222 -4.6199 -0.9121 30 1 -0.3633 0.0003 -1.0277 31 1 -0.3633 -0.8902 0.5135 32 1 -0.3634 0.8897 0.5141 33 1 1.9720 2.1211 -0.0004 34 1 5.6587 1.0780 -0.0013 35 1 6.6147 3.2077 -0.0018 36 1 7.6468 5.0044 -0.7201 37 1 6.6914 6.3918 -1.3381 38 1 8.5012 4.8452 1.3497 39 1 8.3315 6.0862 2.6349 40 1 6.3683 5.0349 3.3508 41 1 6.5361 3.8071 2.0529 42 1 0.8916 -2.5559 -0.5144 43 1 2.5848 -3.1045 -0.5144 44 1 0.8473 -5.5761 3.0891 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365046977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:33 Heat of formation + Delta-G solvation = 6.339380 kcal Electronic energy + Delta-G solvation = -26802.491497 eV Core-core repulsion = 22949.568941 eV Total energy + Delta-G solvation = -3852.922557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.43969 -41.96500 -40.53491 -36.43498 -35.73006 -35.20603 -33.26242 -32.78464 -32.57916 -31.11688 -29.95137 -28.77822 -27.87218 -24.80075 -23.60955 -23.15200 -22.16464 -21.36945 -21.14419 -20.91339 -19.22527 -19.18323 -17.91176 -17.68230 -17.25246 -17.05671 -16.53518 -16.42994 -15.98366 -15.63059 -15.41340 -15.09961 -14.88398 -14.55875 -14.31042 -13.85472 -13.70086 -13.66998 -13.58646 -13.41483 -13.26715 -12.85031 -12.72432 -12.57203 -12.55264 -12.28404 -12.05182 -11.95933 -11.82451 -11.59861 -11.44289 -11.35801 -11.17820 -11.03503 -10.89519 -10.10817 -9.57059 -9.04591 -8.39982 -6.51129 0.97335 1.07085 1.36307 1.37999 1.47872 1.63915 2.02579 2.27169 2.35733 2.84537 2.92614 3.16300 3.48996 3.57925 3.73788 3.82996 3.95186 4.07166 4.10867 4.21588 4.27292 4.44263 4.48683 4.56091 4.64234 4.75089 4.78290 4.82284 4.86055 4.94423 4.99487 5.00717 5.04269 5.12735 5.13257 5.15078 5.22581 5.24240 5.40973 5.65559 5.82793 5.89770 6.02017 6.38125 6.52804 6.70323 7.09616 7.13031 7.40220 8.76743 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028516 B = 0.002471 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.674217 B =11330.347638 C =11583.710763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.090 3.910 3 C -0.297 4.297 4 C 0.294 3.706 5 N -0.634 5.634 6 C 0.712 3.288 7 O -0.598 6.598 8 N -0.706 5.706 9 C 0.139 3.861 10 H 0.083 0.917 11 C -0.143 4.143 12 C 0.058 3.942 13 H 0.154 0.846 14 C -0.142 4.142 15 C -0.151 4.151 16 C 0.045 3.955 17 H 0.112 0.888 18 O -0.396 6.396 19 N -0.356 5.356 20 N -0.344 5.344 21 C 0.242 3.758 22 C -0.550 4.550 23 H 0.023 0.977 24 C 0.021 3.979 25 N -0.938 5.938 26 Si 0.951 3.049 27 H -0.265 1.265 28 H -0.275 1.275 29 H -0.233 1.233 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.165 0.835 34 H 0.422 0.578 35 H 0.416 0.584 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.049 0.951 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.524 20.316 -9.470 26.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 C -0.328 4.328 4 C 0.038 3.962 5 N -0.286 5.286 6 C 0.411 3.589 7 O -0.475 6.475 8 N -0.364 5.364 9 C 0.033 3.967 10 H 0.101 0.899 11 C -0.181 4.181 12 C 0.002 3.998 13 H 0.172 0.828 14 C -0.180 4.180 15 C -0.189 4.189 16 C -0.014 4.014 17 H 0.129 0.871 18 O -0.315 6.315 19 N -0.186 5.186 20 N -0.126 5.126 21 C 0.122 3.878 22 C -0.588 4.588 23 H 0.041 0.959 24 C -0.179 4.179 25 N -0.577 5.577 26 Si 0.772 3.228 27 H -0.190 1.190 28 H -0.200 1.200 29 H -0.156 1.156 30 H 0.119 0.881 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.183 0.817 34 H 0.260 0.740 35 H 0.254 0.746 36 H 0.129 0.871 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.098 19.731 -9.304 25.445 hybrid contribution 0.103 -0.719 0.381 0.821 sum 13.202 19.012 -8.923 24.806 Atomic orbital electron populations 1.20539 0.85303 1.04366 1.04443 1.21735 0.96673 0.86377 0.99200 1.21420 0.90074 0.99924 1.21406 1.18943 0.88095 0.88919 1.00202 1.41351 1.07080 1.03731 1.76424 1.15807 0.85353 0.80092 0.77605 1.90858 1.25298 1.73886 1.57500 1.44869 1.07187 1.05569 1.78748 1.22426 1.00327 0.77484 0.96477 0.89909 1.23493 0.95505 1.00141 0.98928 1.24997 0.85351 0.97512 0.91981 0.82844 1.23438 0.96609 0.98481 0.99451 1.23364 0.94979 1.00558 0.99965 1.25015 0.98118 0.82206 0.96055 0.87059 1.90099 1.30588 1.26580 1.84255 1.77158 0.99731 1.09709 1.32048 1.48417 1.01804 1.07014 1.55408 1.19776 0.96413 0.74661 0.96948 1.21265 1.47661 0.98694 0.91222 0.95855 1.25843 0.93737 0.99245 0.99047 1.70037 1.46997 1.18992 1.21636 0.85672 0.79042 0.78774 0.79285 1.18997 1.20003 1.15621 0.88059 0.91336 0.88429 0.81722 0.74029 0.74579 0.87119 0.88495 0.88276 0.90283 0.91900 0.89972 0.90866 0.93306 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.86 9.89 71.24 0.70 -2.15 16 2 C 0.09 3.71 6.93 41.39 0.29 4.00 16 3 C -0.30 -12.09 9.52 22.11 0.21 -11.88 16 4 C 0.29 11.68 8.11 133.31 1.08 12.76 16 5 N -0.63 -18.28 5.46 -321.23 -1.75 -20.03 16 6 C 0.71 19.21 8.53 179.06 1.53 20.74 16 7 O -0.60 -20.90 13.21 -4.01 -0.05 -20.95 16 8 N -0.71 -11.65 3.62 -449.89 -1.63 -13.28 16 9 C 0.14 2.32 3.14 46.65 0.15 2.46 16 10 H 0.08 1.77 7.71 -2.39 -0.02 1.75 16 11 C -0.14 -1.29 6.30 32.26 0.20 -1.09 16 12 C 0.06 0.62 5.66 32.54 0.18 0.80 16 13 H 0.15 0.88 8.14 -2.39 -0.02 0.86 16 14 C -0.14 -1.39 6.61 32.59 0.22 -1.18 16 15 C -0.15 -2.36 6.43 32.60 0.21 -2.16 16 16 C 0.05 0.89 5.59 32.54 0.18 1.07 16 17 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 18 O -0.40 -7.83 11.64 -148.98 -1.73 -9.56 16 19 N -0.36 -16.15 12.59 -54.43 -0.69 -16.84 16 20 N -0.34 -15.99 3.59 -338.43 -1.22 -17.20 16 21 C 0.24 11.50 4.88 85.63 0.42 11.92 16 22 C -0.55 -31.61 9.94 25.60 0.25 -31.36 16 23 H 0.02 1.56 8.06 -2.91 -0.02 1.53 16 24 C 0.02 1.17 5.47 84.66 0.46 1.64 16 25 N -0.94 -57.19 13.96 21.45 0.30 -56.89 16 26 Si 0.95 40.71 27.47 68.60 1.88 42.59 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 28 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 29 H -0.23 -8.79 6.54 99.48 0.65 -8.14 16 30 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.07 2.42 7.71 -2.38 -0.02 2.40 16 32 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.17 6.59 5.91 -2.91 -0.02 6.58 16 34 H 0.42 9.18 8.84 -92.71 -0.82 8.36 16 35 H 0.42 3.88 8.05 -92.71 -0.75 3.14 16 36 H 0.11 0.45 7.38 -2.38 -0.02 0.43 16 37 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.10 0.51 7.84 -2.38 -0.02 0.49 16 39 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.08 1.24 6.47 -2.39 -0.02 1.23 16 42 H 0.07 3.12 6.70 -2.39 -0.02 3.10 16 43 H 0.05 2.27 7.57 -2.39 -0.02 2.25 16 44 H 0.27 15.34 8.31 -92.70 -0.77 14.56 16 Total: -1.00 -79.23 356.81 0.63 -78.60 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: -0.57 Total: 27.97 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 6.09 Total: 5.58 kcal Atomic # 7 Polarization: -119.25 SS G_CDS: -4.98 Total: -124.23 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -1.79 Total: -30.51 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 1.88 Total: 42.59 kcal Total: -79.23 0.63 -78.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365046977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.939 kcal (2) G-P(sol) polarization free energy of solvation -79.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds